jgi.p|Nanoce1779_2|602664, mRNA_8155 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|602664
Unique Name	mRNA_8155
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1558
Alignment location	scaffold_25:293033..295109 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	602750
Track	FilteredModels2
ProteinId	602664

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_25	supercontig	scaffold_25:293033..295109 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|602664	gene_8155	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|602664	mRNA_8155-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8155	CDS_8155	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_25:293033..295109+
coding sequence from alignment at scaffold_25:293033..295109+

mRNA sequence

>mRNA_8155 ID=mRNA_8155|Name=jgi.p|Nanoce1779_2|602664|organism=Nannochloropsis oceanica|type=mRNA|length=1558bp
TAAAGAGCCAAAAATGCAGGTATGAGTGAAGCAAGAGAATAGCCTGCTCG
ACCCTCGACTTAATTGAACCAAGCTTGTGGTGATGCACTCTTGCTCGCTT
TTTTAGACCCAATCTCATGTCCCACGCTGTCAACGACAGCCCACATCCTA
ATACAGGCCATTATACATACCGTCGTCATGATAATGATGGGCATGCGCCG
CGTTGGAGTGCTTTTCGTATTGATTTTGGCCGCTGCGCACGCTTTTCTAT
TATCCCCCTCCAAGCCCGCGTCGTTGAGGGCTCGTCCAAGCGCATCTGTC
TCGCTGCACCACCGCACAGTAGCACGGACTTCATCACCAGCTTTCCTCCT
CGCCGCTGCCAGTGATCAGCCTGACTGGCCAAGTGACAGCAGCGACGACA
ATTACGCGGATGAAGTCGAGCAAGTGACCGACGTGGTAGACGCCACGGCC
AGTAAAACCACTTTGATGGAACTCCAGCAAGAACTCCTCCTCCTCCTCGT
CGGGCAAAATAAAGGATTTTCCGTATCGGAGTCTGATAGGGAGGACATAG
AGGACACGCTGCGTGACTTGGAAGCAATTAATCCCAACCCTCGTCCCACC
GAGTCCTTCTCCCACGGAACGTCGCCGCTTTCGGGAACGTGGAGACTTAT
CTATACAGACGCCCTAGACGTCCTCGTCCTGGGCTTGGTTCCCATCGCCG
TCATCGGCAAGGTCTACCAAAACATCTCTCCCAACGGCGCAAGCATTGCC
AACGTGGTGGAGCTAAGCCAAGGCGCGAGTCAACTCTCCTTCTTTCCCCT
ACTAGGTAAATTCGGAGATAGCATGGCACGACTCCGTGTGGAGGCCTCCT
CGGAGGTCCTCTCCCCTTCCAGGCTATCGCTCACATTCAAGAGCGCGGGG
TTTGAGCCCATAACGCTTTTCGGAATGGAGGTGGGAAAGCAGCTGTCACT
GCCAAAGCTGGACTTCCCAAACAGTCCCAACGTGGGGTGGATTGAAAGCA
CTTACGTCGACGATAAAATCAGGATTGGCCGTTCGCCAGGGGGAATAGGC
GGAAAGGGGAGTGTGTTTGTGTTTGTCCGGGAGGGCGGGGCAGGACGGTG
GGCGGAGGGGAGGACAGCATGAGCTCTGTAACCTCCCCCCCCCTTGGTCA
CTTGACGGGTTATTGGGGCTTATGTCCTTGGGAATTACTTAGTGGGGTTG
TTTAGGGTGAGACACATGTAACATGGAACGGCTCAAAAGAAGAAATTATA
CCCGTGGTTAGACTGAAGGAGGGGGAGCGTATGCGCCCGGCCCAAGTCGT
GTGCCTCGGACTTGACTGCCGTCCCGTCAAAGCCATTCGAGATTCGGCAG
AAATAAGGGAAGAATATGCAACAATGCAACGTTGGAAGGCTTACCCTCGT
ATGTTATCCTGTGACGTGGCGGACTTGTGCACTGGTAAGTAGCATTTGTT
CGCGGGTATAGGTTGTACGAGATAATTTTAGGATTGTAGGAAACTACAGA
AAAATAATTACTCCGGATTTACCACCCAACTTGCACTTGTTGCTCGTGTT
CCTTTGCT

protein sequence of jgi.p|Nanoce1779_2|602664

>mRNA_8155-protein ID=mRNA_8155-protein|Name=jgi.p|Nanoce1779_2|602664|organism=Nannochloropsis oceanica|type=polypeptide|length=315bp
MIMMGMRRVGVLFVLILAAAHAFLLSPSKPASLRARPSASVSLHHRTVAR
TSSPAFLLAAASDQPDWPSDSSDDNYADEVEQVTDVVDATASKTTLMELQ
QELLLLLVGQNKGFSVSESDREDIEDTLRDLEAINPNPRPTESFSHGTSP
LSGTWRLIYTDALDVLVLGLVPIAVIGKVYQNISPNGASIANVVELSQGA
SQLSFFPLLGKFGDSMARLRVEASSEVLSPSRLSLTFKSAGFEPITLFGM
EVGKQLSLPKLDFPNSPNVGWIESTYVDDKIRIGRSPGGIGGKGSVFVFV
REGGAGRWAEGRTA*

mRNA from alignment at scaffold_25:293033..295109+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8155 ID=mRNA_8155|Name=jgi.p|Nanoce1779_2|602664|organism=Nannochloropsis oceanica|type=mRNA|length=2077bp|location=Sequence derived from alignment at scaffold_25:293033..295109+ (Nannochloropsis oceanica)
TAAAGAGCCAAAAATGCAGGTATGAGTGAAGCAAGAGAATAGCCTGCTCG
ACCCTCGACTTAATTGAACCAAGCTTGTGGTGATGCACTCTTGCTCGCTT
TTTTAGACCCAATCTCATGTCCCACGCTGTCAACGACAGCCCACATCCTA
ATACAGGCCATTATACATACCGTCGTCATGATAATGATGGGCATGCGCCG
CGTTGGAGTGCTTTTCGTATTGATTTTGGCCGCTGCGCACGCTTTTCTAT
TATCCCCCTCCAAGCCCGCGTCGTTGAGGGCTCGTCCAAGCGCATGTAAG
CACTCGCAAGGATGTACAACGTGTGCTTGTACATACTGGAATAAATATTC
ATAATTATTCTGTCTTTGGATGCTTGGCACATTTTCCTACAGTCTAAATT
GCGACTATCGTTCACTCCCTTTCCTCTGCCCCACCCCATCCCACACACAC
CAGCTGTCTCGCTGCACCACCGCACAGTAGCACGGACTTCATCACCAGCT
TTCCTCCTCGCCGCTGCCAGTGATCAGCCTGACTGGCCAAGTGACAGCAG
CGACGACAATTACGCGGATGAAGTCGAGCAAGTGACCGACGTGGTAGACG
CCACGGCCAGTAAAACCACTTTGATGGAACTCCAGCAAGAACTCCTCCTC
CTCCTCGTCGGGCAAAATAAAGGATTTTCCGTATCGGAGTCTGATAGGGA
GGACATAGAGGACACGCTGCGTGACTTGGAAGCAATTAATCCCAACCCTC
GTCCCACCGAGTCCTTCTCCCACGGAACGTCGCCGCTTTCGGGAACGTGG
AGACTTATCTATACAGGTAAAAGGACAGGAAATAGGAAGAGAAAGGGAGG
GGATCTAGGGAACAAGGAAAAACTGAGGAAGAGTGTGAGTTAAAAGTATC
ATAAGCCTGAGTAAAAGGTGTTTTTTTCAAGCTGGCCATTGGAACAGCAT
TCACACACTGCCTTCCAACCTCTCTTTCCTTGCCATCCTCATAGACGCCC
TAGACGTCCTCGTCCTGGGCTTGGTTCCCATCGCCGTCATCGGCAAGGTC
TACCAAAACATCTCTCCCAACGGCGCAAGCATTGCCAACGTGGTGGAGCT
AAGCCAAGGCGCGAGTCAACTCTCCTTCTTTCCCCTACTAGGTAAATTCG
GAGATAGCATGGCACGACTCCGTGTGGAGGCCTCCTCGGAGGTCCTCTCC
CCTTCCAGGCTATCGCTCACATTCAAGAGCGCGGGGTTTGAGCCCATAAC
GCTTTTCGGAATGGAGGTGGGAAAGCAGCTGTCACTGCCAAAGGTAAGGG
AGGGAGGGAGGGAGGAGAGCGAGGGGAGGGAGGGAGGAGCAGTTGGAGGA
GGGACTAAGGTAAGGGCGAAAGACATGTTAAAGAGTCAGGTGGTTGCCAC
ATGAAAAGCTTGCCTCAATAATATGTAACCCACTTGCGTCTCTTTTCGTT
TTCCTTCTATCCTCCCTCCATCTCAGCTGGACTTCCCAAACAGTCCCAAC
GTGGGGTGGATTGAAAGCACTTACGTCGACGATAAAATCAGGATTGGCCG
TTCGCCAGGGGGAATAGGCGGAAAGGGGAGTGTGTTTGTGTTTGTCCGGG
AGGGCGGGGCAGGACGGTGGGCGGAGGGGAGGACAGCATGAGCTCTGTAA
CCTCCCCCCCCCTTGGTCACTTGACGGGTTATTGGGGCTTATGTCCTTGG
GAATTACTTAGTGGGGTTGTTTAGGGTGAGACACATGTAACATGGAACGG
CTCAAAAGAAGAAATTATACCCGTGGTTAGACTGAAGGAGGGGGAGCGTA
TGCGCCCGGCCCAAGTCGTGTGCCTCGGACTTGACTGCCGTCCCGTCAAA
GCCATTCGAGATTCGGCAGAAATAAGGGAAGAATATGCAACAATGCAACG
TTGGAAGGCTTACCCTCGTATGTTATCCTGTGACGTGGCGGACTTGTGCA
CTGGTAAGTAGCATTTGTTCGCGGGTATAGGTTGTACGAGATAATTTTAG
GATTGTAGGAAACTACAGAAAAATAATTACTCCGGATTTACCACCCAACT
TGCACTTGTTGCTCGTGTTCCTTTGCT

Coding sequence (CDS) from alignment at scaffold_25:293033..295109+

>mRNA_8155 ID=mRNA_8155|Name=jgi.p|Nanoce1779_2|602664|organism=Nannochloropsis oceanica|type=CDS|length=3780bp|location=Sequence derived from alignment at scaffold_25:293033..295109+ (Nannochloropsis oceanica)
ATGATAATGATGGGCATGCGCCGCGTTGGAGTGCTTTTCGTATTGATTTT
GGCCGCTGCGCACGCTTTTCTATTATCCCCCTCCAAGCCCGCGTCGTTGA
GGGCTCGTCCAAGCGCATCTGTCTCGCTGCACCACCGCACAGTAGCACGG
ACTTCATCACCAGCTTTCCTCCTCGCCGCTGCCAGTGATCAGCCTGACTG
GCCAAGTGACAGCAGCGACGACAATTACGCGGATGAAGTCGAGCAAGTGA
CCGACGTGGTAGACGCCACGGCCAGTAAAACCACTTTGATGGAACTCCAG
CAAGAACTCCTCCTCCTCCTCGTCGGGCAAAATAAAGGATTTTCCGTATC
GGAGTCTGATAGGGAGGACATAGAGGACACGCTGCGTGACTTGGAAGCAA
TTAATCCCAACCCTCGTCCCACCGAGTCCTTCTCCCACGGAACGTCGCCG
CTTTCGGGAACGTGGAGACTTATCTATACAGACGCCCTAGACGTCCTCGT
CCTGGGCTTGGTTCCCATCGCCGTCATCGGCAAGGTCTACCAAAACATCT
CTCCCAACGGCGCAAGCATTGCCAACGTGGTGGAGCTAAGCCAAGGCGCG
AGTCAACTCTCCTTCTTTCCCCTACTAGGTAAATTCGGAGATAGCATGGC
ACGACTCCGTGTGGAGGCCTCCTCGGAGGTCCTCTCCCCTTCCAGGCTAT
CGCTCACATTCAAGAGCGCGGGGTTTGAGCCCATAACGCTTTTCGGAATG
GAGGTGGGAAAGCAGCTGTCACTGCCAAAGCTGGACTTCCCAAACAGTCC
CAACGTGGGGTGGATTGAAAGCACTTACGTCGACGATAAAATCAGGATTG
GCCGTTCGCCAGGGGGAATAGGCGGAAAGGGGAGTGTGTTTGTGTTTGTC
CGGGAGGGCGGGGCAGGACGGTGGGCGGAGGGGAGGACAGCATGAATGAT
AATGATGGGCATGCGCCGCGTTGGAGTGCTTTTCGTATTGATTTTGGCCG
CTGCGCACGCTTTTCTATTATCCCCCTCCAAGCCCGCGTCGTTGAGGGCT
CGTCCAAGCGCATCTGTCTCGCTGCACCACCGCACAGTAGCACGGACTTC
ATCACCAGCTTTCCTCCTCGCCGCTGCCAGTGATCAGCCTGACTGGCCAA
GTGACAGCAGCGACGACAATTACGCGGATGAAGTCGAGCAAGTGACCGAC
GTGGTAGACGCCACGGCCAGTAAAACCACTTTGATGGAACTCCAGCAAGA
ACTCCTCCTCCTCCTCGTCGGGCAAAATAAAGGATTTTCCGTATCGGAGT
CTGATAGGGAGGACATAGAGGACACGCTGCGTGACTTGGAAGCAATTAAT
CCCAACCCTCGTCCCACCGAGTCCTTCTCCCACGGAACGTCGCCGCTTTC
GGGAACGTGGAGACTTATCTATACAGACGCCCTAGACGTCCTCGTCCTGG
GCTTGGTTCCCATCGCCGTCATCGGCAAGGTCTACCAAAACATCTCTCCC
AACGGCGCAAGCATTGCCAACGTGGTGGAGCTAAGCCAAGGCGCGAGTCA
ACTCTCCTTCTTTCCCCTACTAGGTAAATTCGGAGATAGCATGGCACGAC
TCCGTGTGGAGGCCTCCTCGGAGGTCCTCTCCCCTTCCAGGCTATCGCTC
ACATTCAAGAGCGCGGGGTTTGAGCCCATAACGCTTTTCGGAATGGAGGT
GGGAAAGCAGCTGTCACTGCCAAAGCTGGACTTCCCAAACAGTCCCAACG
TGGGGTGGATTGAAAGCACTTACGTCGACGATAAAATCAGGATTGGCCGT
TCGCCAGGGGGAATAGGCGGAAAGGGGAGTGTGTTTGTGTTTGTCCGGGA
GGGCGGGGCAGGACGGTGGGCGGAGGGGAGGACAGCATGAATGATAATGA
TGGGCATGCGCCGCGTTGGAGTGCTTTTCGTATTGATTTTGGCCGCTGCG
CACGCTTTTCTATTATCCCCCTCCAAGCCCGCGTCGTTGAGGGCTCGTCC
AAGCGCATCTGTCTCGCTGCACCACCGCACAGTAGCACGGACTTCATCAC
CAGCTTTCCTCCTCGCCGCTGCCAGTGATCAGCCTGACTGGCCAAGTGAC
AGCAGCGACGACAATTACGCGGATGAAGTCGAGCAAGTGACCGACGTGGT
AGACGCCACGGCCAGTAAAACCACTTTGATGGAACTCCAGCAAGAACTCC
TCCTCCTCCTCGTCGGGCAAAATAAAGGATTTTCCGTATCGGAGTCTGAT
AGGGAGGACATAGAGGACACGCTGCGTGACTTGGAAGCAATTAATCCCAA
CCCTCGTCCCACCGAGTCCTTCTCCCACGGAACGTCGCCGCTTTCGGGAA
CGTGGAGACTTATCTATACAGACGCCCTAGACGTCCTCGTCCTGGGCTTG
GTTCCCATCGCCGTCATCGGCAAGGTCTACCAAAACATCTCTCCCAACGG
CGCAAGCATTGCCAACGTGGTGGAGCTAAGCCAAGGCGCGAGTCAACTCT
CCTTCTTTCCCCTACTAGGTAAATTCGGAGATAGCATGGCACGACTCCGT
GTGGAGGCCTCCTCGGAGGTCCTCTCCCCTTCCAGGCTATCGCTCACATT
CAAGAGCGCGGGGTTTGAGCCCATAACGCTTTTCGGAATGGAGGTGGGAA
AGCAGCTGTCACTGCCAAAGCTGGACTTCCCAAACAGTCCCAACGTGGGG
TGGATTGAAAGCACTTACGTCGACGATAAAATCAGGATTGGCCGTTCGCC
AGGGGGAATAGGCGGAAAGGGGAGTGTGTTTGTGTTTGTCCGGGAGGGCG
GGGCAGGACGGTGGGCGGAGGGGAGGACAGCATGAATGATAATGATGGGC
ATGCGCCGCGTTGGAGTGCTTTTCGTATTGATTTTGGCCGCTGCGCACGC
TTTTCTATTATCCCCCTCCAAGCCCGCGTCGTTGAGGGCTCGTCCAAGCG
CATCTGTCTCGCTGCACCACCGCACAGTAGCACGGACTTCATCACCAGCT
TTCCTCCTCGCCGCTGCCAGTGATCAGCCTGACTGGCCAAGTGACAGCAG
CGACGACAATTACGCGGATGAAGTCGAGCAAGTGACCGACGTGGTAGACG
CCACGGCCAGTAAAACCACTTTGATGGAACTCCAGCAAGAACTCCTCCTC
CTCCTCGTCGGGCAAAATAAAGGATTTTCCGTATCGGAGTCTGATAGGGA
GGACATAGAGGACACGCTGCGTGACTTGGAAGCAATTAATCCCAACCCTC
GTCCCACCGAGTCCTTCTCCCACGGAACGTCGCCGCTTTCGGGAACGTGG
AGACTTATCTATACAGACGCCCTAGACGTCCTCGTCCTGGGCTTGGTTCC
CATCGCCGTCATCGGCAAGGTCTACCAAAACATCTCTCCCAACGGCGCAA
GCATTGCCAACGTGGTGGAGCTAAGCCAAGGCGCGAGTCAACTCTCCTTC
TTTCCCCTACTAGGTAAATTCGGAGATAGCATGGCACGACTCCGTGTGGA
GGCCTCCTCGGAGGTCCTCTCCCCTTCCAGGCTATCGCTCACATTCAAGA
GCGCGGGGTTTGAGCCCATAACGCTTTTCGGAATGGAGGTGGGAAAGCAG
CTGTCACTGCCAAAGCTGGACTTCCCAAACAGTCCCAACGTGGGGTGGAT
TGAAAGCACTTACGTCGACGATAAAATCAGGATTGGCCGTTCGCCAGGGG
GAATAGGCGGAAAGGGGAGTGTGTTTGTGTTTGTCCGGGAGGGCGGGGCA
GGACGGTGGGCGGAGGGGAGGACAGCATGA

Synonyms

Publications