jgi.p|Nanoce1779_2|532653, mRNA_8153 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|532653
Unique NamemRNA_8153
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length501
Alignment locationscaffold_25:289295..289958 -

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Properties
Property NameValue
TranscriptId532739
TrackFilteredModels2
ProteinId532653
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_25supercontigscaffold_25:289295..289958 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|532653gene_8153Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|532653mRNA_8153-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8153CDS_8153Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8153 ID=mRNA_8153|Name=jgi.p|Nanoce1779_2|532653|organism=Nannochloropsis oceanica|type=mRNA|length=501bp
ATGTCCGCCTCAATTTCCGGTGGAGGAGGGGAAGAGGAAGCCCCTCGATT
CAAAGTGCAGCTTGCTGTATATGACTTGTCGCAAGGCATGGCTCGGCAGC
TCGGCCCCACACTCTTGGGTATGGAGATCGAAGCCATCTACCACACCGGA
ATCGTGGTATATGGCAAGGAGCACTTTTTTGGCGGAGGGATTGTGTCAGT
GCCCCACGAGGAGTTCATGGCCTCATATCACATGCAACCTTTTCAGATTC
TGGAATTGGGAGAGACAGAGGTGGGCGAGGAGCTTTTCAATGAGTTTTTG
CAGGAGGTCAGCCCACGGTTCACGGCGGAGACGTATGATCTGATGAGCTG
GAACTGCAATAACTTCAGCAACGAAGCCGCGCTTTTCCTCCTGGGTGACG
GGATTCCAGCCCACATCCTCGCCCTACCCGAACAAGTTTTTTCCTCCCCC
CTCGGCGCCCTCCTTCGTCCCGCTATCGAACAAATGCAGGGCGCCATGCG
C
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protein sequence of jgi.p|Nanoce1779_2|532653

>mRNA_8153-protein ID=mRNA_8153-protein|Name=jgi.p|Nanoce1779_2|532653|organism=Nannochloropsis oceanica|type=polypeptide|length=167bp
MSASISGGGGEEEAPRFKVQLAVYDLSQGMARQLGPTLLGMEIEAIYHTG
IVVYGKEHFFGGGIVSVPHEEFMASYHMQPFQILELGETEVGEELFNEFL
QEVSPRFTAETYDLMSWNCNNFSNEAALFLLGDGIPAHILALPEQVFSSP
LGALLRPAIEQMQGAMR
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mRNA from alignment at scaffold_25:289295..289958-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8153 ID=mRNA_8153|Name=jgi.p|Nanoce1779_2|532653|organism=Nannochloropsis oceanica|type=mRNA|length=664bp|location=Sequence derived from alignment at scaffold_25:289295..289958- (Nannochloropsis oceanica)
ATGTCCGCCTCAATTTCCGGTGGAGGAGGGGAAGAGGAAGCCCCTCGATT
CAAAGTGCAGCTTGCTGTATATGACTTGTCGCAAGGCATGGCTCGGCAGC
TCGGCCCCACACTCTTGGGTATGGAGATCGAAGCCATCTACCACACCGGA
ATCGTGGTATATGGCAAGGAGCACTTTTTTGGCGGAGGGATTGTGTCAGT
GCCCCACGAGGAGTTCATGGCCTCATATCACATGCAACCTTTTCAGATTC
TGGAATTGGGAGAGACAGAGGTGGGCGAGGAGCTTTTCAATGAGTTTTTG
CAGGAGGTCAGCCCACGGTTCACGGCGGAGACGTATGGTGAGTAAAAAGA
GAAAGTGAAGGTGGGAGGCAAGGAGGACGAGTGTCGCCCATAGTGGTAGA
TTGTTTATGGCAAGTCATCGTCTTTACTGATTTTCATGTACATTCCATTA
ACCTGACCATTCCTTCTTTCCTTTCTTCCCCCTCGCCCTCCCTCCCCAAG
ATCTGATGAGCTGGAACTGCAATAACTTCAGCAACGAAGCCGCGCTTTTC
CTCCTGGGTGACGGGATTCCAGCCCACATCCTCGCCCTACCCGAACAAGT
TTTTTCCTCCCCCCTCGGCGCCCTCCTTCGTCCCGCTATCGAACAAATGC
AGGGCGCCATGCGC
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Coding sequence (CDS) from alignment at scaffold_25:289295..289958-

>mRNA_8153 ID=mRNA_8153|Name=jgi.p|Nanoce1779_2|532653|organism=Nannochloropsis oceanica|type=CDS|length=1002bp|location=Sequence derived from alignment at scaffold_25:289295..289958- (Nannochloropsis oceanica)
ATCTGATGAGCTGGAACTGCAATAACTTCAGCAACGAAGCCGCGCTTTTC
CTCCTGGGTGACGGGATTCCAGCCCACATCCTCGCCCTACCCGAACAAGT
TTTTTCCTCCCCCCTCGGCGCCCTCCTTCGTCCCGCTATCGAACAAATGC
AGGGCGCCATGCGCATGTCCGCCTCAATTTCCGGTGGAGGAGGGGAAGAG
GAAGCCCCTCGATTCAAAGTGCAGCTTGCTGTATATGACTTGTCGCAAGG
CATGGCTCGGCAGCTCGGCCCCACACTCTTGGGTATGGAGATCGAAGCCA
TCTACCACACCGGAATCGTGGTATATGGCAAGGAGCACTTTTTTGGCGGA
GGGATTGTGTCAGTGCCCCACGAGGAGTTCATGGCCTCATATCACATGCA
ACCTTTTCAGATTCTGGAATTGGGAGAGACAGAGGTGGGCGAGGAGCTTT
TCAATGAGTTTTTGCAGGAGGTCAGCCCACGGTTCACGGCGGAGACGTAT
GATCTGATGAGCTGGAACTGCAATAACTTCAGCAACGAAGCCGCGCTTTT
CCTCCTGGGTGACGGGATTCCAGCCCACATCCTCGCCCTACCCGAACAAG
TTTTTTCCTCCCCCCTCGGCGCCCTCCTTCGTCCCGCTATCGAACAAATG
CAGGGCGCCATGCGCATGTCCGCCTCAATTTCCGGTGGAGGAGGGGAAGA
GGAAGCCCCTCGATTCAAAGTGCAGCTTGCTGTATATGACTTGTCGCAAG
GCATGGCTCGGCAGCTCGGCCCCACACTCTTGGGTATGGAGATCGAAGCC
ATCTACCACACCGGAATCGTGGTATATGGCAAGGAGCACTTTTTTGGCGG
AGGGATTGTGTCAGTGCCCCACGAGGAGTTCATGGCCTCATATCACATGC
AACCTTTTCAGATTCTGGAATTGGGAGAGACAGAGGTGGGCGAGGAGCTT
TTCAATGAGTTTTTGCAGGAGGTCAGCCCACGGTTCACGGCGGAGACGTA
TG
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Synonyms
Publications