jgi.p|Nanoce1779_2|602631, mRNA_8147 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|602631
Unique NamemRNA_8147
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length920
Alignment locationscaffold_25:269709..270862 -

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Properties
Property NameValue
TranscriptId602717
TrackFilteredModels2
ProteinId602631
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_25supercontigscaffold_25:269709..270862 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|602631gene_8147Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|602631mRNA_8147-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8147CDS_8147Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8147 ID=mRNA_8147|Name=jgi.p|Nanoce1779_2|602631|organism=Nannochloropsis oceanica|type=mRNA|length=920bp
GCCCCGCACACTCAACCTTCCACTCGCACCACTACAGAAGAAGAGGCCGA
ATATAATCCATTCGCCAACGAAATCGGCCCTGCTATGCCCCCCGCCAACC
ATCCCACCTTCAAAGAAGCCAAGGCCGTAGCCGCCAAGCCCCTCCTCTAC
GACCCCCCCTCACTTGGCCCCGTCGAACCCTCCACACAATACCAACAACA
ACCACAACAAGCCTTTGCCCCCCCGACCTCTATCTCCGCCGCCCCTACCA
AAGTCGTGCTTGTCCACGACGAACAAGCATCACCGTCCTCCACCTTCCCT
CTCTCCGCTCCTGCCCCCTACCAATCGTACATGGCTCCCTGCCCCGCCGC
AACAGCAACAGCAGCAGCAGCTCCTCCTCCCCAGGTTTCAGGCGCGGGCG
TCGGGACACTTTTTACGGTCGGTGCTGGTGTAAAGCCAGCAGTGGGAGGA
GGAGGAGTAGCAACGGGACAGCAGCCGGCGTTTGGAGCGGCAAGGGCGGC
TTCGCAGGCGGTGGGAGGTGGGAAACCTAAGAAGTTTATTAGAGTGGGGC
CTGGGGAGACGTGGGAGGATCCTACTTTGATCGAGTGGCCGGAGAATGAC
TTTCGGTTGTTTTGCGGAGACTTGGGACCAGAGATCAACGATGAGTTACT
TGCCAAGGCCTTCGAGGGCAAGTACCCCTCATTCGCCAAAGCCAAGGTGC
TACGGGAAAAGCAGACTGGCAAGAGCCGTGGGTATGGTTTCGTGTCTTTC
CTCGACCCGTTCGAGGGGCTCAAGGCCCTGAGGGAGATGAATGGGAGGTA
CATAGGGAGTCGACCCGTGAAGCTGAAGAAGTGTGATTGGAAGAACAGGG
ACCTGAAAGAGGTGCGGAAGAAGGAGAAGGCCAAGAAGAAGTTCTTGGGG
AAGTTGGGTTTGGGATGAGG
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protein sequence of jgi.p|Nanoce1779_2|602631

>mRNA_8147-protein ID=mRNA_8147-protein|Name=jgi.p|Nanoce1779_2|602631|organism=Nannochloropsis oceanica|type=polypeptide|length=278bp
MPPANHPTFKEAKAVAAKPLLYDPPSLGPVEPSTQYQQQPQQAFAPPTSI
SAAPTKVVLVHDEQASPSSTFPLSAPAPYQSYMAPCPAATATAAAAPPPQ
VSGAGVGTLFTVGAGVKPAVGGGGVATGQQPAFGAARAASQAVGGGKPKK
FIRVGPGETWEDPTLIEWPENDFRLFCGDLGPEINDELLAKAFEGKYPSF
AKAKVLREKQTGKSRGYGFVSFLDPFEGLKALREMNGRYIGSRPVKLKKC
DWKNRDLKEVRKKEKAKKKFLGKLGLG*
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mRNA from alignment at scaffold_25:269709..270862-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8147 ID=mRNA_8147|Name=jgi.p|Nanoce1779_2|602631|organism=Nannochloropsis oceanica|type=mRNA|length=1154bp|location=Sequence derived from alignment at scaffold_25:269709..270862- (Nannochloropsis oceanica)
GCCCCGCACACTCAACCTTCCACTCGCACCACTACAGAAGAAGAGGCCGA
ATATAATCCATTCGCCAACGAAATCGGCCCTGCTATGCCCCCCGCCAACC
ATCCCACCTTCAAAGAAGCCAAGGCCGTAGCCGCCAAGCCCCTCCTCTAC
GACCCCCCCTCACTTGGCCCCGTCGAACCCTCCACACAATACCAACAACA
ACCACAACAAGCCTTTGCCCCCCCGACCTCTATCTCCGCCGCCCCTACCA
AAGTCGTGCTTGTCCACGACGAACAAGCATCACCGTCCTCCACCTTCCCT
CTCTCCGCTCCTGCCCCCTACCAATCGTACATGGCTCCCTGCCCCGCCGC
AACAGCAACAGCAGCAGCAGCTCCTCCTCCCCAGGTTTCAGGCGCGGGCG
TCGGGACACTTTTTACGGTCGGTGCTGGTGTAAAGCCAGCAGTGGGAGGA
GGAGGAGTAGCAACGGGACAGCAGCCGGCGTTTGGAGCGGCAAGGGCGGC
TTCGCAGGCGGTGGGAGGTGGGAAACCTAAGAAGTTTATTAGAGTGGGGC
CTGGGGAGACGTGGGAGGATCCTACTTTGATCGAGTGGCCGGAGAGTAAG
TACAAGGGAGGGAGGAGGAAGGAGGAAGTGCGGGAGGAAGGGTGAGTAGA
GCGTACAATCCCTGACTTCTTTTCTACTTGCTCACACTATCTATTTCTAT
TTATGTTGTTTACACAGATGACTTTCGGTTGTTTTGCGGAGACTTGGGAC
CAGAGATCAACGATGAGGTACATTCATTTCAACCGTTTTGATATTTTTTT
TATCGCTTGTCTCCCTGTTGCTTCAATACTTTTTCGCGTCTCACGAGCTC
CATCTCTCCCTCCCTCTCTCCCTTCCTAGTTACTTGCCAAGGCCTTCGAG
GGCAAGTACCCCTCATTCGCCAAAGCCAAGGTGCTACGGGAAAAGCAGAC
TGGCAAGAGCCGTGGGTATGGTTTCGTGTCTTTCCTCGACCCGTTCGAGG
GGCTCAAGGCCCTGAGGGAGATGAATGGGAGGTACATAGGGAGTCGACCC
GTGAAGCTGAAGAAGTGTGATTGGAAGAACAGGGACCTGAAAGAGGTGCG
GAAGAAGGAGAAGGCCAAGAAGAAGTTCTTGGGGAAGTTGGGTTTGGGAT
GAGG
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Coding sequence (CDS) from alignment at scaffold_25:269709..270862-

>mRNA_8147 ID=mRNA_8147|Name=jgi.p|Nanoce1779_2|602631|organism=Nannochloropsis oceanica|type=CDS|length=2502bp|location=Sequence derived from alignment at scaffold_25:269709..270862- (Nannochloropsis oceanica)
TTACTTGCCAAGGCCTTCGAGGGCAAGTACCCCTCATTCGCCAAAGCCAA
GGTGCTACGGGAAAAGCAGACTGGCAAGAGCCGTGGGTATGGTTTCGTGT
CTTTCCTCGACCCGTTCGAGGGGCTCAAGGCCCTGAGGGAGATGAATGGG
AGGTACATAGGGAGTCGACCCGTGAAGCTGAAGAAGTGTGATTGGAAGAA
CAGGGACCTGAAAGAGGTGCGGAAGAAGGAGAAGGCCAAGAAGAAGTTCT
TGGGGAAGTTGGGTTTGGGATGAATGACTTTCGGTTGTTTTGCGGAGACT
TGGGACCAGAGATCAACGATGAGATGCCCCCCGCCAACCATCCCACCTTC
AAAGAAGCCAAGGCCGTAGCCGCCAAGCCCCTCCTCTACGACCCCCCCTC
ACTTGGCCCCGTCGAACCCTCCACACAATACCAACAACAACCACAACAAG
CCTTTGCCCCCCCGACCTCTATCTCCGCCGCCCCTACCAAAGTCGTGCTT
GTCCACGACGAACAAGCATCACCGTCCTCCACCTTCCCTCTCTCCGCTCC
TGCCCCCTACCAATCGTACATGGCTCCCTGCCCCGCCGCAACAGCAACAG
CAGCAGCAGCTCCTCCTCCCCAGGTTTCAGGCGCGGGCGTCGGGACACTT
TTTACGGTCGGTGCTGGTGTAAAGCCAGCAGTGGGAGGAGGAGGAGTAGC
AACGGGACAGCAGCCGGCGTTTGGAGCGGCAAGGGCGGCTTCGCAGGCGG
TGGGAGGTGGGAAACCTAAGAAGTTTATTAGAGTGGGGCCTGGGGAGACG
TGGGAGGATCCTACTTTGATCGAGTGGCCGGAGATTACTTGCCAAGGCCT
TCGAGGGCAAGTACCCCTCATTCGCCAAAGCCAAGGTGCTACGGGAAAAG
CAGACTGGCAAGAGCCGTGGGTATGGTTTCGTGTCTTTCCTCGACCCGTT
CGAGGGGCTCAAGGCCCTGAGGGAGATGAATGGGAGGTACATAGGGAGTC
GACCCGTGAAGCTGAAGAAGTGTGATTGGAAGAACAGGGACCTGAAAGAG
GTGCGGAAGAAGGAGAAGGCCAAGAAGAAGTTCTTGGGGAAGTTGGGTTT
GGGATGAATGACTTTCGGTTGTTTTGCGGAGACTTGGGACCAGAGATCAA
CGATGAGATGCCCCCCGCCAACCATCCCACCTTCAAAGAAGCCAAGGCCG
TAGCCGCCAAGCCCCTCCTCTACGACCCCCCCTCACTTGGCCCCGTCGAA
CCCTCCACACAATACCAACAACAACCACAACAAGCCTTTGCCCCCCCGAC
CTCTATCTCCGCCGCCCCTACCAAAGTCGTGCTTGTCCACGACGAACAAG
CATCACCGTCCTCCACCTTCCCTCTCTCCGCTCCTGCCCCCTACCAATCG
TACATGGCTCCCTGCCCCGCCGCAACAGCAACAGCAGCAGCAGCTCCTCC
TCCCCAGGTTTCAGGCGCGGGCGTCGGGACACTTTTTACGGTCGGTGCTG
GTGTAAAGCCAGCAGTGGGAGGAGGAGGAGTAGCAACGGGACAGCAGCCG
GCGTTTGGAGCGGCAAGGGCGGCTTCGCAGGCGGTGGGAGGTGGGAAACC
TAAGAAGTTTATTAGAGTGGGGCCTGGGGAGACGTGGGAGGATCCTACTT
TGATCGAGTGGCCGGAGATTACTTGCCAAGGCCTTCGAGGGCAAGTACCC
CTCATTCGCCAAAGCCAAGGTGCTACGGGAAAAGCAGACTGGCAAGAGCC
GTGGGTATGGTTTCGTGTCTTTCCTCGACCCGTTCGAGGGGCTCAAGGCC
CTGAGGGAGATGAATGGGAGGTACATAGGGAGTCGACCCGTGAAGCTGAA
GAAGTGTGATTGGAAGAACAGGGACCTGAAAGAGGTGCGGAAGAAGGAGA
AGGCCAAGAAGAAGTTCTTGGGGAAGTTGGGTTTGGGATGAATGACTTTC
GGTTGTTTTGCGGAGACTTGGGACCAGAGATCAACGATGAGATGCCCCCC
GCCAACCATCCCACCTTCAAAGAAGCCAAGGCCGTAGCCGCCAAGCCCCT
CCTCTACGACCCCCCCTCACTTGGCCCCGTCGAACCCTCCACACAATACC
AACAACAACCACAACAAGCCTTTGCCCCCCCGACCTCTATCTCCGCCGCC
CCTACCAAAGTCGTGCTTGTCCACGACGAACAAGCATCACCGTCCTCCAC
CTTCCCTCTCTCCGCTCCTGCCCCCTACCAATCGTACATGGCTCCCTGCC
CCGCCGCAACAGCAACAGCAGCAGCAGCTCCTCCTCCCCAGGTTTCAGGC
GCGGGCGTCGGGACACTTTTTACGGTCGGTGCTGGTGTAAAGCCAGCAGT
GGGAGGAGGAGGAGTAGCAACGGGACAGCAGCCGGCGTTTGGAGCGGCAA
GGGCGGCTTCGCAGGCGGTGGGAGGTGGGAAACCTAAGAAGTTTATTAGA
GTGGGGCCTGGGGAGACGTGGGAGGATCCTACTTTGATCGAGTGGCCGGA
GA
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Synonyms
Publications