jgi.p|Nanoce1779_2|632923, mRNA_8146 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|632923
Unique Name	mRNA_8146
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2193
Alignment location	scaffold_25:267034..269242 +

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Properties


Property Name	Value
TranscriptId	633009
Track	FilteredModels2
ProteinId	632923

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_25	supercontig	scaffold_25:267034..269242 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|632923	gene_8146	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|632923	mRNA_8146-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8146	CDS_8146	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_25:267034..269242+
coding sequence from alignment at scaffold_25:267034..269242+

mRNA sequence

>mRNA_8146 ID=mRNA_8146|Name=jgi.p|Nanoce1779_2|632923|organism=Nannochloropsis oceanica|type=mRNA|length=2193bp
CCGAAGCTGTCGCCCATGCCCTTACTAGCCCCTACCCAAAAACACGATAT
TTAGTTGCGAATATAAACGGGGTACCTCTGTGGCTTTTGCATGGGTTGTG
TGGGCTCTTACCGGATCGAGTGGTAGATTTTATCAAGCTGAACTTGTAGA
TAAGTTCAGGAAAGAGAGGAAGGGACAAATGCGGGTGTAACAAGAGGAAC
CATGTTTTATATCTTTGTAACCTAGCTTGGTCATCGTGACTGACCATGCG
CACGCTAGTAAAAGTAAAAATGACACGAGAGCATGGAAAGATGGGTGAAG
TCTGTTTTTGTGTGTGGACGTCAACCTCTCGCCCCATACCCGTTACACTC
TCATCTTTCCGTCCACGATACTATATACCTACACATGCATCTCCCATCCA
CACGCGCACGTACAGCACGATGATGACGATGACGACGAAAAGTGCGACGA
CAAAAAGCAGGAGACGGTAGCCTGAAAGCCGTTGGCTGCATGGACGATAC
TACCGCCACAAGGCCGCCATCATCCGCCCCTGCCGACTTCCCCTTTTCCC
AACGGCCACACCTGGAGCCCAACGACTGGAGCTACCTAGCGGAGGGCAAG
CTGCACGTCCTCCTAGCCTACCGCGGCAACAATCCTCGCTTTCAAAACCA
TGTGCTGCGCCTGCTGAAGGAGCGGCACCCGGGAGAAGAAAAGGCGCATT
ATGACCCTCAACACGAGCGAGACTACGTCCTCCGAGTTGCAGGACCAGCG
CTCGGGCACCAATACCTCGACGCTGGCACATTCCTCGCTGTTTCGCCATC
CTTTTTGACAGCTATAGCAGAGCAGATCTTGCCCTTTCGACCGTCGCGAC
GGGCAATCTACGGCCTGGACTTGCACGCCTGCGCCGTTGAATGCCAGAGG
GACCTCACCCGCTTCTTCCCCCTCCCATCCCTCCCTCCCTCCTCTTCTTC
TTCCCCCCATCTCACCCTCGAACTCAAGCCTAAGGCCGGCTACACCTCGC
GTAGTCGTCTAGTACCCCCAGAACATCGATTTAAATATCAAGAAAGCCGC
TTTCAGCTCATGCAGCGCTACCGGTACGCACTCCACGACACTCGAGGCCT
AGAGCCAGAATGGGGTGAACTGGTGGGAGGCCCCAACAAGGACTATACCC
CTCTCAATCTATTTTCTGGAGATAGGGGGCGAATGACAAGGGCTTTGCAA
GGGTTGCTGAGGAATCCTCAAAATTTTTGTCAGTTTTTTGTGGATAGCCA
AGTGGTGTTTGGGAGGGGGAAGGTGGAGGTAGGGAGGGCGACAGAGGCGG
CGAGGAAGCTGTTATTTGTTGAGGAGGAGAGAAGGGGGGAGCAGGGTGAG
GATGAGAACACTACATCGCCGAATTGTGATAAAAAGGAAGAAGACGACGA
GGAGGAGCAGCAGGAGCAGCTGAAGGAAGAGAGAGAGAAAGAAGAGGAAT
GGCTGGATGTACTGATGGTTGTGGTAGCGCAGATCCTAGAGCAAGAGCCT
CTATTGCGGCGCTTGCTTAGATTACAAGCGATGGATGTGCTGGACGTGGA
GGGGGCAGGGTTGGTGATGAGGAGGCTGATTGCTTTATGTGAGAAGGGGG
GCGAGGGAGGGAGGGGGGGGACGGAGGAGGCGTTGGCTTTGTTGGAGATG
GAGGAGTTTAGAGGGTTTGTCGATTGTGAGAGCGAGGAAGGGGCTGAGGA
GGGGGGAGAAGAAAAGAGGGAGGAAGGAGCGGGGTTGGTGTCCGCGATTG
TGCAGCGGCTGGAGGCGTTGCTGGTGGTGAGACATATCTCTGAGAGGGAC
AACCACGACAAAAGCGTCGCGGACGCTAATGAAGACACGAAGAAGAAAGA
GGACGAAGACAAGGGAAAAGGGGGATCTGTTTGTCCTCGGCACGGCTACG
AGCAGTCTCTCTTAGACGAGCAGCACGCCCAGGCCCTGGCCGCCGTTAAG
GTGCTCACCAAAGAGGAGTGTCAGATCCTCCTCCAGCGTTGGCTCATTTC
CTTGGGCGCCTGTGATTGTAGCATTATGCTCTCCCTCCGCAGACATCACG
CCTTCCCTTCCTCCCACCCTTCCTGCTGCTCCTCATTCTCCCTCTCTTCT
TCTGGCCACTGCCAGACGGCCACAGAGCCGGGCCCCACGCCCATAGAGAG
GAGGGAGATAGGCCAAATGGAACCAGCGCTGCTCGATATGTAA

protein sequence of jgi.p|Nanoce1779_2|632923

>mRNA_8146-protein ID=mRNA_8146-protein|Name=jgi.p|Nanoce1779_2|632923|organism=Nannochloropsis oceanica|type=polypeptide|length=568bp
MDDTTATRPPSSAPADFPFSQRPHLEPNDWSYLAEGKLHVLLAYRGNNPR
FQNHVLRLLKERHPGEEKAHYDPQHERDYVLRVAGPALGHQYLDAGTFLA
VSPSFLTAIAEQILPFRPSRRAIYGLDLHACAVECQRDLTRFFPLPSLPP
SSSSSPHLTLELKPKAGYTSRSRLVPPEHRFKYQESRFQLMQRYRYALHD
TRGLEPEWGELVGGPNKDYTPLNLFSGDRGRMTRALQGLLRNPQNFCQFF
VDSQVVFGRGKVEVGRATEAARKLLFVEEERRGEQGEDENTTSPNCDKKE
EDDEEEQQEQLKEEREKEEEWLDVLMVVVAQILEQEPLLRRLLRLQAMDV
LDVEGAGLVMRRLIALCEKGGEGGRGGTEEALALLEMEEFRGFVDCESEE
GAEEGGEEKREEGAGLVSAIVQRLEALLVVRHISERDNHDKSVADANEDT
KKKEDEDKGKGGSVCPRHGYEQSLLDEQHAQALAAVKVLTKEECQILLQR
WLISLGACDCSIMLSLRRHHAFPSSHPSCCSSFSLSSSGHCQTATEPGPT
PIERREIGQMEPALLDM*

mRNA from alignment at scaffold_25:267034..269242+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8146 ID=mRNA_8146|Name=jgi.p|Nanoce1779_2|632923|organism=Nannochloropsis oceanica|type=mRNA|length=2209bp|location=Sequence derived from alignment at scaffold_25:267034..269242+ (Nannochloropsis oceanica)
CCGAAGCTGTCGCCCATGCCCTTACTAGCCCCTACCCAAAAACACGATAT
TTAGTTGCGAATATAAACGGGGTACCTCTGTGGCTTTTGCATGGGTTGTG
TGGGCTCTTACCGGATCGAGTGGTAGATTTTATCAAGCTGAACTTGTAGA
TAAGTTCAGGAAAGAGAGGAAGGGACAAATGCGGGTGTAACAAGAGGAAC
CATGTTTTATATCTTTGTAACCTAGCTTGGTCATCGTGACTGACCATGCG
CACGCTAGTAAAAGTAAAAATGACACGAGAGCATGGAAAGATGGGTGAAG
TCTGTTTTTGTGTGTGGACGTCAACCTCTCGCCCCATACCCGTTACACTC
TCATCTTTCCGTCCACGATACTATATACCTACACATGCATCTCCCATCCA
CACGCGCACGTACAGCACGATGATGACGATGACGACGAAAAGTGCGACGA
CAAAAAGCAGGAGACGGTAGCCTGAAAGCCGTTGGCTGCATGGACGATAC
TACCGCCACAAGGCCGCCATCATCCGCCCCTGCCGACTTCCCCTTTTCCC
AACGGCCACACCTGGAGCCCAACGACTGGAGCTACCTAGCGGAGGGCAAG
CTGCACGTCCTCCTAGCCTACCGCGGCAACAATCCTCGCTTTCAAAACCA
TGTGCTGCGCCTGCTGAAGGAGCGGCACCCGGGAGAAGAAAAGGCGCATT
ATGACCCTCAACACGAGCGAGACTACGTCCTCCGAGTTGCAGGACCAGCG
CTCGGGCACCAATACCTCGACGCTGGCACATTCCTCGCTGTTTCGCCATC
CTTTTTGACAGCTATAGCAGAGCAGATCTTGCCCTTTCGACCGTCGCGAC
GGGCAATCTACGGCCTGGACTTGCACGCCTGCGCCGTTGAATGCCAGAGG
GACCTCACCCGCTTCTTCCCCCTCCCATCCCTCCCTCCCTCCTCTTCTTC
TTCCCCCCATCTCACCCTCGAACTCAAGCCTAAGGCCGGCTACACCTCGC
GTAGTCGTCTAGTACCCCCAGAACATCGATTTAAATATCAAGAAAGCCGC
TTTCAGCTCATGCAGCGCTACCGGTACGCACTCCACGACACTCGAGGCCT
AGAGCCAGAATGGGGTGAACTGGTGGGAGGCCCCAACAAGGACTATACCC
CTCTCAATCTATTTTCTGGAGATAGGGGGCGAATGACAAGGGCTTTGCAA
GGGTTGCTGAGGAATCCTCAAAATTTTTGTCAGTTTTTTGTGGATAGCCA
AGTGGTGTTTGGGAGGGGGAAGGTGGAGGTAGGGAGGGCGACAGAGGCGG
CGAGGAAGCTGTTATTTGTTGAGGAGGAGAGAAGGGGGGAGCAGGGTGAG
GATGAGAACACTACATCGCCGAATTGTGATAAAAAGGAAGAAGACGACGA
GGAGGAGCAGCAGGAGCAGCTGAAGGAAGAGAGAGAGAAAGAAGAGGAAT
GGCTGGATGTACTGATGGTTGTGGTAGCGCAGATCCTAGAGCAAGAGCCT
CTATTGCGGCGCTTGCTTAGATTACAAGCGATGGATGTGCTGGACGTGGA
GGGGGCAGGGTTGGTGATGAGGAGGCTGATTGCTTTATGTGAGAAGGGGG
GCGAGGGAGGGAGGGGGGGGACGGAGGAGGCGTTGGCTTTGTTGGAGATG
GAGGAGTTTAGAGGGTTTGTCGATTGTGAGAGCGAGGAAGGGGCTGAGGA
GGGGGGAGAAGAAAAGAGGGAGGAAGGAGCGGGGTTGGTGTCCGCGATTG
TGCAGCGGCTGGAGGCGTTGCTGGTGGTGAGACATATCTCTGAGAGGGAC
AACCACGACAAAAGCGTCGCGGACGCTAATGAAGACACGAAGAAGAAAGA
GGACGAAGACAAGGGAAAAGGGGGATCTGTTTGTCCTCGGCACGGCTACG
AGCAGTCTCTCTTAGACGAGCAGCACGCCCAGGCCCTGGCCGCCGTTAAG
GTGCTCACCAAAGAGGAGTGTCAGATCCTCCTCCAGCGTTGGCTCATTTC
CTTGGGCGCCTGTGATTGTAGCATTATGCTCTCCCTCCGCAGACATCACG
CCTTCCCTTCCTCCCACCCTTCCTGCTGCTCCTCATTCTCCCTCTCTTCT
TCTGGCCACTGCCAGACGGCCACAGAGCCGGGGTATGTCTACTTTCAGCC
CCACGCCCATAGAGAGGAGGGAGATAGGCCAAATGGAACCAGCGCTGCTC
GATATGTAA

Coding sequence (CDS) from alignment at scaffold_25:267034..269242+

>mRNA_8146 ID=mRNA_8146|Name=jgi.p|Nanoce1779_2|632923|organism=Nannochloropsis oceanica|type=CDS|length=3408bp|location=Sequence derived from alignment at scaffold_25:267034..269242+ (Nannochloropsis oceanica)
ATGGACGATACTACCGCCACAAGGCCGCCATCATCCGCCCCTGCCGACTT
CCCCTTTTCCCAACGGCCACACCTGGAGCCCAACGACTGGAGCTACCTAG
CGGAGGGCAAGCTGCACGTCCTCCTAGCCTACCGCGGCAACAATCCTCGC
TTTCAAAACCATGTGCTGCGCCTGCTGAAGGAGCGGCACCCGGGAGAAGA
AAAGGCGCATTATGACCCTCAACACGAGCGAGACTACGTCCTCCGAGTTG
CAGGACCAGCGCTCGGGCACCAATACCTCGACGCTGGCACATTCCTCGCT
GTTTCGCCATCCTTTTTGACAGCTATAGCAGAGCAGATCTTGCCCTTTCG
ACCGTCGCGACGGGCAATCTACGGCCTGGACTTGCACGCCTGCGCCGTTG
AATGCCAGAGGGACCTCACCCGCTTCTTCCCCCTCCCATCCCTCCCTCCC
TCCTCTTCTTCTTCCCCCCATCTCACCCTCGAACTCAAGCCTAAGGCCGG
CTACACCTCGCGTAGTCGTCTAGTACCCCCAGAACATCGATTTAAATATC
AAGAAAGCCGCTTTCAGCTCATGCAGCGCTACCGGTACGCACTCCACGAC
ACTCGAGGCCTAGAGCCAGAATGGGGTGAACTGGTGGGAGGCCCCAACAA
GGACTATACCCCTCTCAATCTATTTTCTGGAGATAGGGGGCGAATGACAA
GGGCTTTGCAAGGGTTGCTGAGGAATCCTCAAAATTTTTGTCAGTTTTTT
GTGGATAGCCAAGTGGTGTTTGGGAGGGGGAAGGTGGAGGTAGGGAGGGC
GACAGAGGCGGCGAGGAAGCTGTTATTTGTTGAGGAGGAGAGAAGGGGGG
AGCAGGGTGAGGATGAGAACACTACATCGCCGAATTGTGATAAAAAGGAA
GAAGACGACGAGGAGGAGCAGCAGGAGCAGCTGAAGGAAGAGAGAGAGAA
AGAAGAGGAATGGCTGGATGTACTGATGGTTGTGGTAGCGCAGATCCTAG
AGCAAGAGCCTCTATTGCGGCGCTTGCTTAGATTACAAGCGATGGATGTG
CTGGACGTGGAGGGGGCAGGGTTGGTGATGAGGAGGCTGATTGCTTTATG
TGAGAAGGGGGGCGAGGGAGGGAGGGGGGGGACGGAGGAGGCGTTGGCTT
TGTTGGAGATGGAGGAGTTTAGAGGGTTTGTCGATTGTGAGAGCGAGGAA
GGGGCTGAGGAGGGGGGAGAAGAAAAGAGGGAGGAAGGAGCGGGGTTGGT
GTCCGCGATTGTGCAGCGGCTGGAGGCGTTGCTGGTGGTGAGACATATCT
CTGAGAGGGACAACCACGACAAAAGCGTCGCGGACGCTAATGAAGACACG
AAGAAGAAAGAGGACGAAGACAAGGGAAAAGGGGGATCTGTTTGTCCTCG
GCACGGCTACGAGCAGTCTCTCTTAGACGAGCAGCACGCCCAGGCCCTGG
CCGCCGTTAAGGTGCTCACCAAAGAGGAGTGTCAGATCCTCCTCCAGCGT
TGGCTCATTTCCTTGGGCGCCTGTGATTGTAGCATTATGCTCTCCCTCCG
CAGACATCACGCCTTCCCTTCCTCCCACCCTTCCTGCTGCTCCTCATTCT
CCCTCTCTTCTTCTGGCCACTGCCAGACGGCCACAGAGCCGGGCCCCACG
CCCATAGAGAGGAGGGAGATAGGCCAAATGGAACCAGCGCTGCTCGATAT
GTAAATGGACGATACTACCGCCACAAGGCCGCCATCATCCGCCCCTGCCG
ACTTCCCCTTTTCCCAACGGCCACACCTGGAGCCCAACGACTGGAGCTAC
CTAGCGGAGGGCAAGCTGCACGTCCTCCTAGCCTACCGCGGCAACAATCC
TCGCTTTCAAAACCATGTGCTGCGCCTGCTGAAGGAGCGGCACCCGGGAG
AAGAAAAGGCGCATTATGACCCTCAACACGAGCGAGACTACGTCCTCCGA
GTTGCAGGACCAGCGCTCGGGCACCAATACCTCGACGCTGGCACATTCCT
CGCTGTTTCGCCATCCTTTTTGACAGCTATAGCAGAGCAGATCTTGCCCT
TTCGACCGTCGCGACGGGCAATCTACGGCCTGGACTTGCACGCCTGCGCC
GTTGAATGCCAGAGGGACCTCACCCGCTTCTTCCCCCTCCCATCCCTCCC
TCCCTCCTCTTCTTCTTCCCCCCATCTCACCCTCGAACTCAAGCCTAAGG
CCGGCTACACCTCGCGTAGTCGTCTAGTACCCCCAGAACATCGATTTAAA
TATCAAGAAAGCCGCTTTCAGCTCATGCAGCGCTACCGGTACGCACTCCA
CGACACTCGAGGCCTAGAGCCAGAATGGGGTGAACTGGTGGGAGGCCCCA
ACAAGGACTATACCCCTCTCAATCTATTTTCTGGAGATAGGGGGCGAATG
ACAAGGGCTTTGCAAGGGTTGCTGAGGAATCCTCAAAATTTTTGTCAGTT
TTTTGTGGATAGCCAAGTGGTGTTTGGGAGGGGGAAGGTGGAGGTAGGGA
GGGCGACAGAGGCGGCGAGGAAGCTGTTATTTGTTGAGGAGGAGAGAAGG
GGGGAGCAGGGTGAGGATGAGAACACTACATCGCCGAATTGTGATAAAAA
GGAAGAAGACGACGAGGAGGAGCAGCAGGAGCAGCTGAAGGAAGAGAGAG
AGAAAGAAGAGGAATGGCTGGATGTACTGATGGTTGTGGTAGCGCAGATC
CTAGAGCAAGAGCCTCTATTGCGGCGCTTGCTTAGATTACAAGCGATGGA
TGTGCTGGACGTGGAGGGGGCAGGGTTGGTGATGAGGAGGCTGATTGCTT
TATGTGAGAAGGGGGGCGAGGGAGGGAGGGGGGGGACGGAGGAGGCGTTG
GCTTTGTTGGAGATGGAGGAGTTTAGAGGGTTTGTCGATTGTGAGAGCGA
GGAAGGGGCTGAGGAGGGGGGAGAAGAAAAGAGGGAGGAAGGAGCGGGGT
TGGTGTCCGCGATTGTGCAGCGGCTGGAGGCGTTGCTGGTGGTGAGACAT
ATCTCTGAGAGGGACAACCACGACAAAAGCGTCGCGGACGCTAATGAAGA
CACGAAGAAGAAAGAGGACGAAGACAAGGGAAAAGGGGGATCTGTTTGTC
CTCGGCACGGCTACGAGCAGTCTCTCTTAGACGAGCAGCACGCCCAGGCC
CTGGCCGCCGTTAAGGTGCTCACCAAAGAGGAGTGTCAGATCCTCCTCCA
GCGTTGGCTCATTTCCTTGGGCGCCTGTGATTGTAGCATTATGCTCTCCC
TCCGCAGACATCACGCCTTCCCTTCCTCCCACCCTTCCTGCTGCTCCTCA
TTCTCCCTCTCTTCTTCTGGCCACTGCCAGACGGCCACAGAGCCGGGCCC
CACGCCCATAGAGAGGAGGGAGATAGGCCAAATGGAACCAGCGCTGCTCG
ATATGTAA

Synonyms

Publications