jgi.p|Nanoce1779_2|203101, mRNA_8145 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|203101
Unique Name	mRNA_8145
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1544
Alignment location	scaffold_25:265730..267352 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	203187
Track	FilteredModels2
ProteinId	203101

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_25	supercontig	scaffold_25:265730..267352 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|203101	gene_8145	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|203101	mRNA_8145-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8145	CDS_8145	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_25:265730..267352+
coding sequence from alignment at scaffold_25:265730..267352+

mRNA sequence

>mRNA_8145 ID=mRNA_8145|Name=jgi.p|Nanoce1779_2|203101|organism=Nannochloropsis oceanica|type=mRNA|length=1544bp
GGGGAGGAGGGGAGGTTCCTACAGCGCAACCATATTTCGATTCAAATTAA
ATAAAAGGTATTGCACATCTCGATATTTGGGTGTCGGGAAGCAGGATGGC
ATCGATTTCAACCCCAACCGCTTTCTTCGGCTCAAATGCCAGAAGATTTA
TGCACTTCTTGCGAAGGATTAAAAGCGTAACCCGCATCGATTTCCACAAG
GATGGTCAACTGAAAATATAGTGTTGTACATAATTATGAGGGGAGAAAAT
GTTGCGCCAGCCTTTTTTGCTTTTTTGTTTTTGTTATGTACGCAGCTCAT
CATACTTGTTTTCTCCTCCTCATTCAACACATTTCAGACACAACTCTTTT
TCCTCGGCATTGCCTGCCTTCCGCCTCCTCCTAATCCACGCCTCCATCCC
CTCCCTCCTTATCATTCGCCATTATGGCCATGAAAGACTGGGCATTTCCC
ATGGGCGTCCTGGCCGTCCTTTGGAGTGCCTTACGCCTAGCTGTATGCCG
TACCTATCCTGTGCCGCCTCCTGGGAATCGGGCTATCGTGGTGGTTTCAG
GTGCCTCCACGGGTATCGGCCGCCACATCGCCGAGCACCTTGCCCACTTG
GGCTTCACCATCTTGGCAGGTGTGCGGAAAGAAGCCGACGTTGAGGCCTT
GCAAAGCGCCCACTTGCCCTCTCTTCACCCGATCATCCTTGACGTTACCA
AGCCTGCCGACGTGGAAGCAGCCGTGGAACACGCGCGGACCCTGGCCCCC
CTGCCTGTCTGGGGACTCGTTAATAACGCTGGACTTGGATATCCTATTCC
TGTGGAACTGGCAGACATGGAAAGGGTGCGAAAACTGTACGAAGTGAATG
TTCTTGCCATCATTGCAATGACGCAAGCCTTTGCTCCCCTTCTCCGAGCA
GCACCCAGCGGGCGAATCGTGAACGTCGGCTCGGCCACGGGGACAATGGC
GGCGCAATGCGATGGGGTTTATGCCTCTTCCAAGCATGCAGTGGAAGGGT
TGACGGACAGTCTACGATTGGAGCTATCGGCGTGGGATATGTCCGTCTCC
CTCCTCGTGCCTGGCCAAGTGCAGAGCAACATGTGGGGAAAATTGACGGG
GCTCAACGCCCCCTCCGAAAAAGATCTGACTCCAGAACAATACGCCTTGT
ATGAGCCACTGTTTGCGCAGGTTGATAAGGCCATTTCGGGCTTCTTGCCG
CGTCTCTCACCTGCGTCTGTCACGTCCGAAGCTGTCGCCCATGCCCTTAC
TAGCCCCTACCCAAAAACACGATATTTAGTTGCGAATATAAACGGGGTAC
CTCTGTGGCTTTTGCATGGGTTGTGTGGGCTCTTACCGGATCGAGTGGTA
GATTTTATCAAGCTGAACTTGTAGATAAGTTCAGGAAAGAGAGGAAGGGA
CAAATGCGGGTGTAACAAGAGGAACCATGTTTTATATCTTTGTAACCTAG
CTTGGTCATCGTGACTGACCATGCGCACGCTAGTAAAAGTAAAAATGACA
CGAGAGCATGGAAAGATGGGTGAAGTCTGTTTTTGTGTGTGGAC

protein sequence of jgi.p|Nanoce1779_2|203101

>mRNA_8145-protein ID=mRNA_8145-protein|Name=jgi.p|Nanoce1779_2|203101|organism=Nannochloropsis oceanica|type=polypeptide|length=317bp
MAMKDWAFPMGVLAVLWSALRLAVCRTYPVPPPGNRAIVVVSGASTGIGR
HIAEHLAHLGFTILAGVRKEADVEALQSAHLPSLHPIILDVTKPADVEAA
VEHARTLAPLPVWGLVNNAGLGYPIPVELADMERVRKLYEVNVLAIIAMT
QAFAPLLRAAPSGRIVNVGSATGTMAAQCDGVYASSKHAVEGLTDSLRLE
LSAWDMSVSLLVPGQVQSNMWGKLTGLNAPSEKDLTPEQYALYEPLFAQV
DKAISGFLPRLSPASVTSEAVAHALTSPYPKTRYLVANINGVPLWLLHGL
CGLLPDRVVDFIKLNL*

mRNA from alignment at scaffold_25:265730..267352+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8145 ID=mRNA_8145|Name=jgi.p|Nanoce1779_2|203101|organism=Nannochloropsis oceanica|type=mRNA|length=1623bp|location=Sequence derived from alignment at scaffold_25:265730..267352+ (Nannochloropsis oceanica)
GGGGAGGAGGGGAGGTTCCTACAGCGCAACCATATTTCGATTCAAATTAA
ATAAAAGGTATTGCACATCTCGATATTTGGGTGTCGGGAAGCAGGATGGC
ATCGATTTCAACCCCAACCGCTTTCTTCGGCTCAAATGCCAGAAGATTTA
TGCACTTCTTGCGAAGGATTAAAAGCGTAACCCGCATCGATTTCCACAAG
GATGGTCAACTGAAAATATAGTGTTGTACATAATTATGAGGGGAGAAAAT
GTTGCGCCAGCCTTTTTTGCTTTTTTGTTTTTGTTATGTACGCAGCTCAT
CATACTTGTTTTCTCCTCCTCATTCAACACATTTCAGACACAACTCTTTT
TCCTCGGCATTGCCTGCCTTCCGCCTCCTCCTAATCCACGCCTCCATCCC
CTCCCTCCTTATCATTCGCCATTATGGCCATGAAAGACTGGGCATTTCCC
ATGGGCGTCCTGGCCGTCCTTTGGAGTGCCTTACGCCTAGCTGTATGCCG
TACCTATCCTGTGCCGCCTCCTGGGAATCGGGCTATCGTGGTGGTTTCAG
GTATGCATGGATGTGATGCGTGACTGAATGGTGAGCTTCGTCTTTGTTCC
TCTCTTCAACCTTTTCCCCTCCCTCTCAGGTGCCTCCACGGGTATCGGCC
GCCACATCGCCGAGCACCTTGCCCACTTGGGCTTCACCATCTTGGCAGGT
GTGCGGAAAGAAGCCGACGTTGAGGCCTTGCAAAGCGCCCACTTGCCCTC
TCTTCACCCGATCATCCTTGACGTTACCAAGCCTGCCGACGTGGAAGCAG
CCGTGGAACACGCGCGGACCCTGGCCCCCCTGCCTGTCTGGGGACTCGTT
AATAACGCTGGACTTGGATATCCTATTCCTGTGGAACTGGCAGACATGGA
AAGGGTGCGAAAACTGTACGAAGTGAATGTTCTTGCCATCATTGCAATGA
CGCAAGCCTTTGCTCCCCTTCTCCGAGCAGCACCCAGCGGGCGAATCGTG
AACGTCGGCTCGGCCACGGGGACAATGGCGGCGCAATGCGATGGGGTTTA
TGCCTCTTCCAAGCATGCAGTGGAAGGGTTGACGGACAGTCTACGATTGG
AGCTATCGGCGTGGGATATGTCCGTCTCCCTCCTCGTGCCTGGCCAAGTG
CAGAGCAACATGTGGGGAAAATTGACGGGGCTCAACGCCCCCTCCGAAAA
AGATCTGACTCCAGAACAATACGCCTTGTATGAGCCACTGTTTGCGCAGG
TTGATAAGGCCATTTCGGGCTTCTTGCCGCGTCTCTCACCTGCGTCTGTC
ACGTCCGAAGCTGTCGCCCATGCCCTTACTAGCCCCTACCCAAAAACACG
ATATTTAGTTGCGAATATAAACGGGGTACCTCTGTGGCTTTTGCATGGGT
TGTGTGGGCTCTTACCGGATCGAGTGGTAGATTTTATCAAGCTGAACTTG
TAGATAAGTTCAGGAAAGAGAGGAAGGGACAAATGCGGGTGTAACAAGAG
GAACCATGTTTTATATCTTTGTAACCTAGCTTGGTCATCGTGACTGACCA
TGCGCACGCTAGTAAAAGTAAAAATGACACGAGAGCATGGAAAGATGGGT
GAAGTCTGTTTTTGTGTGTGGAC

Coding sequence (CDS) from alignment at scaffold_25:265730..267352+

>mRNA_8145 ID=mRNA_8145|Name=jgi.p|Nanoce1779_2|203101|organism=Nannochloropsis oceanica|type=CDS|length=1902bp|location=Sequence derived from alignment at scaffold_25:265730..267352+ (Nannochloropsis oceanica)
ATGGCCATGAAAGACTGGGCATTTCCCATGGGCGTCCTGGCCGTCCTTTG
GAGTGCCTTACGCCTAGCTGTATGCCGTACCTATCCTGTGCCGCCTCCTG
GGAATCGGGCTATCGTGGTGGTTTCAGGTGCCTCCACGGGTATCGGCCGC
CACATCGCCGAGCACCTTGCCCACTTGGGCTTCACCATCTTGGCAGGTGT
GCGGAAAGAAGCCGACGTTGAGGCCTTGCAAAGCGCCCACTTGCCCTCTC
TTCACCCGATCATCCTTGACGTTACCAAGCCTGCCGACGTGGAAGCAGCC
GTGGAACACGCGCGGACCCTGGCCCCCCTGCCTGTCTGGGGACTCGTTAA
TAACGCTGGACTTGGATATCCTATTCCTGTGGAACTGGCAGACATGGAAA
GGGTGCGAAAACTGTACGAAGTGAATGTTCTTGCCATCATTGCAATGACG
CAAGCCTTTGCTCCCCTTCTCCGAGCAGCACCCAGCGGGCGAATCGTGAA
CGTCGGCTCGGCCACGGGGACAATGGCGGCGCAATGCGATGGGGTTTATG
CCTCTTCCAAGCATGCAGTGGAAGGGTTGACGGACAGTCTACGATTGGAG
CTATCGGCGTGGGATATGTCCGTCTCCCTCCTCGTGCCTGGCCAAGTGCA
GAGCAACATGTGGGGAAAATTGACGGGGCTCAACGCCCCCTCCGAAAAAG
ATCTGACTCCAGAACAATACGCCTTGTATGAGCCACTGTTTGCGCAGGTT
GATAAGGCCATTTCGGGCTTCTTGCCGCGTCTCTCACCTGCGTCTGTCAC
GTCCGAAGCTGTCGCCCATGCCCTTACTAGCCCCTACCCAAAAACACGAT
ATTTAGTTGCGAATATAAACGGGGTACCTCTGTGGCTTTTGCATGGGTTG
TGTGGGCTCTTACCGGATCGAGTGGTAGATTTTATCAAGCTGAACTTGTA
GATGGCCATGAAAGACTGGGCATTTCCCATGGGCGTCCTGGCCGTCCTTT
GGAGTGCCTTACGCCTAGCTGTATGCCGTACCTATCCTGTGCCGCCTCCT
GGGAATCGGGCTATCGTGGTGGTTTCAGGTGCCTCCACGGGTATCGGCCG
CCACATCGCCGAGCACCTTGCCCACTTGGGCTTCACCATCTTGGCAGGTG
TGCGGAAAGAAGCCGACGTTGAGGCCTTGCAAAGCGCCCACTTGCCCTCT
CTTCACCCGATCATCCTTGACGTTACCAAGCCTGCCGACGTGGAAGCAGC
CGTGGAACACGCGCGGACCCTGGCCCCCCTGCCTGTCTGGGGACTCGTTA
ATAACGCTGGACTTGGATATCCTATTCCTGTGGAACTGGCAGACATGGAA
AGGGTGCGAAAACTGTACGAAGTGAATGTTCTTGCCATCATTGCAATGAC
GCAAGCCTTTGCTCCCCTTCTCCGAGCAGCACCCAGCGGGCGAATCGTGA
ACGTCGGCTCGGCCACGGGGACAATGGCGGCGCAATGCGATGGGGTTTAT
GCCTCTTCCAAGCATGCAGTGGAAGGGTTGACGGACAGTCTACGATTGGA
GCTATCGGCGTGGGATATGTCCGTCTCCCTCCTCGTGCCTGGCCAAGTGC
AGAGCAACATGTGGGGAAAATTGACGGGGCTCAACGCCCCCTCCGAAAAA
GATCTGACTCCAGAACAATACGCCTTGTATGAGCCACTGTTTGCGCAGGT
TGATAAGGCCATTTCGGGCTTCTTGCCGCGTCTCTCACCTGCGTCTGTCA
CGTCCGAAGCTGTCGCCCATGCCCTTACTAGCCCCTACCCAAAAACACGA
TATTTAGTTGCGAATATAAACGGGGTACCTCTGTGGCTTTTGCATGGGTT
GTGTGGGCTCTTACCGGATCGAGTGGTAGATTTTATCAAGCTGAACTTGT
AG

Synonyms

Publications