jgi.p|Nanoce1779_2|602625, mRNA_8144 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|602625
Unique NamemRNA_8144
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length931
Alignment locationscaffold_25:264784..265714 -

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Properties
Property NameValue
TranscriptId602711
TrackFilteredModels2
ProteinId602625
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_25supercontigscaffold_25:264784..265714 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|602625gene_8144Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|602625mRNA_8144-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8144CDS_8144Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8144 ID=mRNA_8144|Name=jgi.p|Nanoce1779_2|602625|organism=Nannochloropsis oceanica|type=mRNA|length=931bp
CCAAAAAAACATGAGACATACGCAACGCCCCCCCATAAAAATATACTCGA
GGACAGGAACGAAATGGTGATGTCGCAATCTATAGATGATCAAGTGCGCA
ACCTCTGCCGGGCCATCGACCACGGCCTGCGAGATTGGCAAGGTAAGACG
AGAGTCTCTGCTTTGCACCCAAAGGGGATCTCGACGTTCCCCAAGGGGGA
TCTCGACGTTCCCCCCACTGCACGCACGACTCTCCACTCTCCTCCTCTCA
CCTTCGCCCCCTCTTATGCGCGTACACATCATAGATGCGCGAACTAGCAG
TTTGAGCGTGCTTAAGGGACTGGCCAACGCCACGATTGCCACCAGCTACC
TTAAAGATGGCGGGGGTAGTGTCAGGGGCGGAAGCGATCCACACGAGGCC
CGTTGGCGACCAGGAGAGGAAAACCTACGTGCTCGACTGGAAGTGGGCCT
CTGGACGCAGCGATTGGCCAATTATCAGCGGCTCCAAACCCAGCTCCAGC
GAATGGAGGATGCCGTGGATGCACTACGGGAGTCGCTCGCTACCCTGCAA
GGGTGCTCGTTGCCGATGCGCGAGGCCTTGGGTCGGAGCATCAATCTACT
GTATTTGGAGGAACTGCTGGTCGAAGCTGTGGGCGCCTTAACAGATGAAG
GAATTATGTGTGGAGATCTAGTGCAGAAGTCAGGCCATGCGACAACACAG
GAGTCTCAGGTCTTGTATGCCTCGGCCTGGGCGGCCCTGCCGCTGCTGCA
GGAACACCGACGGCAGGCATTGAAAGACCTGGTACAGGTGGTGCTATCAG
GAGGAGAGGCTTGAGTATGGAAAATAGATCAAAAAAGGAGACAGACGGAA
ATTAAGAGGAGTAGAGCGGTGTGAATGTGAATCAGGGTATGTGTAAAGAA
CAATGAAAAAAAGCATCATTTCGACATGTAT
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protein sequence of jgi.p|Nanoce1779_2|602625

>mRNA_8144-protein ID=mRNA_8144-protein|Name=jgi.p|Nanoce1779_2|602625|organism=Nannochloropsis oceanica|type=polypeptide|length=243bp
MIKCATSAGPSTTACEIGKVRRESLLCTQRGSRRSPRGISTFPPLHARLS
TLLLSPSPPLMRVHIIDARTSSLSVLKGLANATIATSYLKDGGGSVRGGS
DPHEARWRPGEENLRARLEVGLWTQRLANYQRLQTQLQRMEDAVDALRES
LATLQGCSLPMREALGRSINLLYLEELLVEAVGALTDEGIMCGDLVQKSG
HATTQESQVLYASAWAALPLLQEHRRQALKDLVQVVLSGGEA*
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mRNA from alignment at scaffold_25:264784..265714-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8144 ID=mRNA_8144|Name=jgi.p|Nanoce1779_2|602625|organism=Nannochloropsis oceanica|type=mRNA|length=931bp|location=Sequence derived from alignment at scaffold_25:264784..265714- (Nannochloropsis oceanica)
CCAAAAAAACATGAGACATACGCAACGCCCCCCCATAAAAATATACTCGA
GGACAGGAACGAAATGGTGATGTCGCAATCTATAGATGATCAAGTGCGCA
ACCTCTGCCGGGCCATCGACCACGGCCTGCGAGATTGGCAAGGTAAGACG
AGAGTCTCTGCTTTGCACCCAAAGGGGATCTCGACGTTCCCCAAGGGGGA
TCTCGACGTTCCCCCCACTGCACGCACGACTCTCCACTCTCCTCCTCTCA
CCTTCGCCCCCTCTTATGCGCGTACACATCATAGATGCGCGAACTAGCAG
TTTGAGCGTGCTTAAGGGACTGGCCAACGCCACGATTGCCACCAGCTACC
TTAAAGATGGCGGGGGTAGTGTCAGGGGCGGAAGCGATCCACACGAGGCC
CGTTGGCGACCAGGAGAGGAAAACCTACGTGCTCGACTGGAAGTGGGCCT
CTGGACGCAGCGATTGGCCAATTATCAGCGGCTCCAAACCCAGCTCCAGC
GAATGGAGGATGCCGTGGATGCACTACGGGAGTCGCTCGCTACCCTGCAA
GGGTGCTCGTTGCCGATGCGCGAGGCCTTGGGTCGGAGCATCAATCTACT
GTATTTGGAGGAACTGCTGGTCGAAGCTGTGGGCGCCTTAACAGATGAAG
GAATTATGTGTGGAGATCTAGTGCAGAAGTCAGGCCATGCGACAACACAG
GAGTCTCAGGTCTTGTATGCCTCGGCCTGGGCGGCCCTGCCGCTGCTGCA
GGAACACCGACGGCAGGCATTGAAAGACCTGGTACAGGTGGTGCTATCAG
GAGGAGAGGCTTGAGTATGGAAAATAGATCAAAAAAGGAGACAGACGGAA
ATTAAGAGGAGTAGAGCGGTGTGAATGTGAATCAGGGTATGTGTAAAGAA
CAATGAAAAAAAGCATCATTTCGACATGTAT
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Coding sequence (CDS) from alignment at scaffold_25:264784..265714-

>mRNA_8144 ID=mRNA_8144|Name=jgi.p|Nanoce1779_2|602625|organism=Nannochloropsis oceanica|type=CDS|length=729bp|location=Sequence derived from alignment at scaffold_25:264784..265714- (Nannochloropsis oceanica)
ATGATCAAGTGCGCAACCTCTGCCGGGCCATCGACCACGGCCTGCGAGAT
TGGCAAGGTAAGACGAGAGTCTCTGCTTTGCACCCAAAGGGGATCTCGAC
GTTCCCCAAGGGGGATCTCGACGTTCCCCCCACTGCACGCACGACTCTCC
ACTCTCCTCCTCTCACCTTCGCCCCCTCTTATGCGCGTACACATCATAGA
TGCGCGAACTAGCAGTTTGAGCGTGCTTAAGGGACTGGCCAACGCCACGA
TTGCCACCAGCTACCTTAAAGATGGCGGGGGTAGTGTCAGGGGCGGAAGC
GATCCACACGAGGCCCGTTGGCGACCAGGAGAGGAAAACCTACGTGCTCG
ACTGGAAGTGGGCCTCTGGACGCAGCGATTGGCCAATTATCAGCGGCTCC
AAACCCAGCTCCAGCGAATGGAGGATGCCGTGGATGCACTACGGGAGTCG
CTCGCTACCCTGCAAGGGTGCTCGTTGCCGATGCGCGAGGCCTTGGGTCG
GAGCATCAATCTACTGTATTTGGAGGAACTGCTGGTCGAAGCTGTGGGCG
CCTTAACAGATGAAGGAATTATGTGTGGAGATCTAGTGCAGAAGTCAGGC
CATGCGACAACACAGGAGTCTCAGGTCTTGTATGCCTCGGCCTGGGCGGC
CCTGCCGCTGCTGCAGGAACACCGACGGCAGGCATTGAAAGACCTGGTAC
AGGTGGTGCTATCAGGAGGAGAGGCTTGA
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Synonyms
Publications