jgi.p|Nanoce1779_2|602614, mRNA_8141 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|602614
Unique NamemRNA_8141
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1384
Alignment locationscaffold_25:256881..258264 -

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Properties
Property NameValue
TranscriptId602700
TrackFilteredModels2
ProteinId602614
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_25supercontigscaffold_25:256881..258264 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|602614gene_8141Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|602614mRNA_8141-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8141CDS_8141Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8141 ID=mRNA_8141|Name=jgi.p|Nanoce1779_2|602614|organism=Nannochloropsis oceanica|type=mRNA|length=1384bp
AGCCGCACCCACAAGGACACCATACTCTTCTGCCTATATTGTGTCGACTT
TCGCAGTCGCTGGCTCCTGGAAAAGTGCAGGGTCCTGTGCTAGGAAGGCT
CGTCCTGATCATCGCCACACTTAACTTCAGCCAACTCGCGGCCGCCTTTT
GCCCAGTTTCCTACCTCGTCCAGGTACGCGGAGAGTAGCAAGGATACTCT
AATTTAAGCTCTGTACGAGCGTAGGGACGCGCGTATCCGATGATTGACGT
GTATATCCAAGGCTTGCCTCGGATTCGCCTTCCCTTTCTCTCATTTTCCC
CCTGCATCTCCTAGCCATCATGGCCACCCCACAACCCTGGGAAATAGTCT
AGCAGCATATCATTTTCATAAAAACTACCTTTCTACTGTCCGTGTGAGCC
TTCTCACCACCCTTCTCATACCCGACATAACAGGCCAACCACAACCGCGC
CCGCGGCACGCCAACCGCCATGTCTGCCGGCAAATTTTCTCCCTTCCTGT
CCGCCACCACCTTTGCTGTCGTCGGGGCTAGCACCCGCCGCGAGAAATTC
GGAAATAAGGTGCTCAGATGCTATCTCCAAGACGGCAAGAAGGCTATTCC
CATCAATCCGAGAGAAAAAGAGATCGAGGGCCTTCCTTGCCTTGCCAACC
TTTCCTTTCTGACCTGCCCATCTGAGACGGCAGTTTCTGTCATTACTCCT
CCTGCGGTCACTGTGAGCGTGCTCGAACAGGCTGCCAAGCTGGGAATAAA
GCATGTGTGGCTGCAACCGGGCTGTGAGAGTCCCGAGGCGATTGCCACGG
CGGAGAGAGTTGGCTTGCTTCCCACTTTGATCTTTGGTGGCCCATGCGTC
TTGGTGGAACTCGGCTTTGAGGGGAGGGATCATTGATTGGGGTTAAGAAC
TGACAACAAGAACGGGAATGAAGGTATGGGAACGCCATGAGATTGTTAAG
TTTTACGAATGCGAGGGGAATTGGCCAGGTTGCAGAGGTGTTTGCTAGGG
TGTGCAGTGGCGGGCTTGAGGGTTTGGGTACGGGGACGGGGAGGTCTGAA
GCCATGGACCAAAAGATGTCTAGAAGAGCAGAGCAAATGAGAAAAGTCGT
CTCTTAAAGCCTTCGTAATCAGCTATGTCTGTGCTTCGTGTACAGGAAAT
TTGTGCCGCATGTGAACGAAGGAATCCATGCCAAAAGCGCAACGGACTTA
TCTATCCATCTATCTATCTATTATCGAATATATATATATATATCAATAGT
TCTTTTTTTCTGCCGCTCCTACACTCCTGTAGAACTATCGCACGCAACCT
GACGTCCTCTAGGACTTGCATACGGGGGGGAGCCTTCCACCAATAAAACG
TTGCCTATTCACCCCTTATTCCTTGTCCGAGTTT
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protein sequence of jgi.p|Nanoce1779_2|602614

>mRNA_8141-protein ID=mRNA_8141-protein|Name=jgi.p|Nanoce1779_2|602614|organism=Nannochloropsis oceanica|type=polypeptide|length=139bp
MSAGKFSPFLSATTFAVVGASTRREKFGNKVLRCYLQDGKKAIPINPREK
EIEGLPCLANLSFLTCPSETAVSVITPPAVTVSVLEQAAKLGIKHVWLQP
GCESPEAIATAERVGLLPTLIFGGPCVLVELGFEGRDH*
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mRNA from alignment at scaffold_25:256881..258264-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8141 ID=mRNA_8141|Name=jgi.p|Nanoce1779_2|602614|organism=Nannochloropsis oceanica|type=mRNA|length=1384bp|location=Sequence derived from alignment at scaffold_25:256881..258264- (Nannochloropsis oceanica)
AGCCGCACCCACAAGGACACCATACTCTTCTGCCTATATTGTGTCGACTT
TCGCAGTCGCTGGCTCCTGGAAAAGTGCAGGGTCCTGTGCTAGGAAGGCT
CGTCCTGATCATCGCCACACTTAACTTCAGCCAACTCGCGGCCGCCTTTT
GCCCAGTTTCCTACCTCGTCCAGGTACGCGGAGAGTAGCAAGGATACTCT
AATTTAAGCTCTGTACGAGCGTAGGGACGCGCGTATCCGATGATTGACGT
GTATATCCAAGGCTTGCCTCGGATTCGCCTTCCCTTTCTCTCATTTTCCC
CCTGCATCTCCTAGCCATCATGGCCACCCCACAACCCTGGGAAATAGTCT
AGCAGCATATCATTTTCATAAAAACTACCTTTCTACTGTCCGTGTGAGCC
TTCTCACCACCCTTCTCATACCCGACATAACAGGCCAACCACAACCGCGC
CCGCGGCACGCCAACCGCCATGTCTGCCGGCAAATTTTCTCCCTTCCTGT
CCGCCACCACCTTTGCTGTCGTCGGGGCTAGCACCCGCCGCGAGAAATTC
GGAAATAAGGTGCTCAGATGCTATCTCCAAGACGGCAAGAAGGCTATTCC
CATCAATCCGAGAGAAAAAGAGATCGAGGGCCTTCCTTGCCTTGCCAACC
TTTCCTTTCTGACCTGCCCATCTGAGACGGCAGTTTCTGTCATTACTCCT
CCTGCGGTCACTGTGAGCGTGCTCGAACAGGCTGCCAAGCTGGGAATAAA
GCATGTGTGGCTGCAACCGGGCTGTGAGAGTCCCGAGGCGATTGCCACGG
CGGAGAGAGTTGGCTTGCTTCCCACTTTGATCTTTGGTGGCCCATGCGTC
TTGGTGGAACTCGGCTTTGAGGGGAGGGATCATTGATTGGGGTTAAGAAC
TGACAACAAGAACGGGAATGAAGGTATGGGAACGCCATGAGATTGTTAAG
TTTTACGAATGCGAGGGGAATTGGCCAGGTTGCAGAGGTGTTTGCTAGGG
TGTGCAGTGGCGGGCTTGAGGGTTTGGGTACGGGGACGGGGAGGTCTGAA
GCCATGGACCAAAAGATGTCTAGAAGAGCAGAGCAAATGAGAAAAGTCGT
CTCTTAAAGCCTTCGTAATCAGCTATGTCTGTGCTTCGTGTACAGGAAAT
TTGTGCCGCATGTGAACGAAGGAATCCATGCCAAAAGCGCAACGGACTTA
TCTATCCATCTATCTATCTATTATCGAATATATATATATATATCAATAGT
TCTTTTTTTCTGCCGCTCCTACACTCCTGTAGAACTATCGCACGCAACCT
GACGTCCTCTAGGACTTGCATACGGGGGGGAGCCTTCCACCAATAAAACG
TTGCCTATTCACCCCTTATTCCTTGTCCGAGTTT
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Coding sequence (CDS) from alignment at scaffold_25:256881..258264-

>mRNA_8141 ID=mRNA_8141|Name=jgi.p|Nanoce1779_2|602614|organism=Nannochloropsis oceanica|type=CDS|length=417bp|location=Sequence derived from alignment at scaffold_25:256881..258264- (Nannochloropsis oceanica)
ATGTCTGCCGGCAAATTTTCTCCCTTCCTGTCCGCCACCACCTTTGCTGT
CGTCGGGGCTAGCACCCGCCGCGAGAAATTCGGAAATAAGGTGCTCAGAT
GCTATCTCCAAGACGGCAAGAAGGCTATTCCCATCAATCCGAGAGAAAAA
GAGATCGAGGGCCTTCCTTGCCTTGCCAACCTTTCCTTTCTGACCTGCCC
ATCTGAGACGGCAGTTTCTGTCATTACTCCTCCTGCGGTCACTGTGAGCG
TGCTCGAACAGGCTGCCAAGCTGGGAATAAAGCATGTGTGGCTGCAACCG
GGCTGTGAGAGTCCCGAGGCGATTGCCACGGCGGAGAGAGTTGGCTTGCT
TCCCACTTTGATCTTTGGTGGCCCATGCGTCTTGGTGGAACTCGGCTTTG
AGGGGAGGGATCATTGA
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Synonyms
Publications