jgi.p|Nanoce1779_2|602612, mRNA_8140 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|602612
Unique NamemRNA_8140
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1518
Alignment locationscaffold_25:255222..256940 -

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Properties
Property NameValue
TranscriptId602698
TrackFilteredModels2
ProteinId602612
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_25supercontigscaffold_25:255222..256940 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|602612gene_8140Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|602612mRNA_8140-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8140CDS_8140Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8140 ID=mRNA_8140|Name=jgi.p|Nanoce1779_2|602612|organism=Nannochloropsis oceanica|type=mRNA|length=1518bp
GGGGGGAGCCTTCCACCAATAAAACGTTGCCTATTCACCCCTTATTCCTT
GTCCGAGTTTTTCTAGCGACTTTGACAGGTTTTTCATCAGGCAAAGTCTC
CGGACGGCATACACAGGGCCAGGAGAGGAAGGGTGAGGGGGACAAAAGAG
GAGGTCAGTGGGGATAAAACACATACATTGTCCGCATATCCTGCCGCGGT
TAACCAAACCGAAGATCATGGGGAGGAGCTTCTCCACGGACGGTATCCTA
CGCACCAACACAGAGAAGAATGGGCAAGGTTTTCGAAGGCCAGTGTGTCT
CGGGCGCGGAGGTGCTTTGGGTTGCCGTGCATGGCTTTGGTTTTGCCTTG
GCGCTCTTGACCGTGGGAACGGAGCTACTTCATCCCCGCGCGGTGACGGC
TGTGGTGGCGGCCGGCGGGACGTACTTTTTGGTGTTGTCGGAGGTCACGG
CTCACAGCATTTTGCAAGAATGGGCACCCTTGGTAGCCGCAGTCTTGGGG
GCTGGCCTTCTTTCAATGGGCGGGGCGCGGTTTGCGAGTGGGCAATCTTT
CGCGCCTCCCAGCTTGTCCTCGGGCGCCGGACCTGTCATAATCCTTTCCG
TCTTGGCTGGCTACGTGCTCGCCGCATTTCAGATGCAGGCATTGGGTGAA
AAAGGCCTGGAGGATTGGATTCCATTGGCTTTTGCAGCGGGAATCAGCGG
CCTTCTGGCGAACGCTGGCGCTTACTACAGCCCTAACGAGGACTTTTTCC
CTAAAGGTCTTACGTCTGGTGCGGGCCCCCGCATGGTCATGCTGGGTTTG
GGTCTCTTTGTCGGTCCCTCCTTTCTCGGGGCCTTGGAAAGCCACAAAGG
CACGTGGGAGCAGTGGCTTGCCCTGGCAGCCGCGGCGGCAGGATCGGCGC
TTTTCGCATTCGGCGGTGCAAGGTACGCCCAAGGGTTCGAGTTCTTCCCG
GAAGCTCTGACCAGGGGTCCGGTTCCCGCTGCAGGGATGGCCTTGCTGGC
TGCTTTTATCTACACGTCATTCGTTGAACATTTTGAAGCTCGAAAGCCTG
GGGAAGGGGTGGAGCAGTGGATGCCACTGCTCGGGGCGGTGGTGGGAGCG
GGTGTCTTGTCCCATTGCGGCGCGCGTTGGGGTGCAGGAGAGGCCTTCTT
GCCCGCGCTGCTGGAGAGTGGGGCTTACCCTCTTGTGGCCACAGCGGGCC
TGGTTATCTACACAGTATTAGCGTTGCATGCGGTGAATGAACCAAAGGGT
GGGTTGACGATGTTGATGAATTTGGCAGGGGCGGCATCAGTCGTGGGGGC
TTTGTCGGCCCTCAACAAGAGGAAGTTTGTTGCGGCATGAGGATGCGGAA
GGGGGCGGGTGGTTGTACATACTCGAGAGGAAGAGGACGCAGGAGAGATA
GAGAGAAAAAAGAAAACGGTAAATCGTCTGAGAGAAAGAAAAGGCATAAA
GAGAAGTGGAGTGAAAGCAAGCCGCAAGAAGGCAGCTAAGAGCAAGGTGG
CACACAAGCATATAACAG
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protein sequence of jgi.p|Nanoce1779_2|602612

>mRNA_8140-protein ID=mRNA_8140-protein|Name=jgi.p|Nanoce1779_2|602612|organism=Nannochloropsis oceanica|type=polypeptide|length=357bp
MGKVFEGQCVSGAEVLWVAVHGFGFALALLTVGTELLHPRAVTAVVAAGG
TYFLVLSEVTAHSILQEWAPLVAAVLGAGLLSMGGARFASGQSFAPPSLS
SGAGPVIILSVLAGYVLAAFQMQALGEKGLEDWIPLAFAAGISGLLANAG
AYYSPNEDFFPKGLTSGAGPRMVMLGLGLFVGPSFLGALESHKGTWEQWL
ALAAAAAGSALFAFGGARYAQGFEFFPEALTRGPVPAAGMALLAAFIYTS
FVEHFEARKPGEGVEQWMPLLGAVVGAGVLSHCGARWGAGEAFLPALLES
GAYPLVATAGLVIYTVLALHAVNEPKGGLTMLMNLAGAASVVGALSALNK
RKFVAA*
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mRNA from alignment at scaffold_25:255222..256940-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8140 ID=mRNA_8140|Name=jgi.p|Nanoce1779_2|602612|organism=Nannochloropsis oceanica|type=mRNA|length=1719bp|location=Sequence derived from alignment at scaffold_25:255222..256940- (Nannochloropsis oceanica)
GGGGGGAGCCTTCCACCAATAAAACGTTGCCTATTCACCCCTTATTCCTT
GTCCGAGTTTTTCTAGCGACTTTGACAGGTTTTTCATCAGGCAAAGTCTC
CGGACGGCATACACAGGGCCAGGAGAGGAAGGGTGAGGGGGACAAAAGAG
GAGGTCAGTGGGGATAAAACACATACATTGTCCGCATATCCTGCCGCGGT
TAACCAAACCGAAGATCATGGGGAGGAGCTTCTCCACGGACGGTATCCTG
TAGGTAGCCCTTGTCACTGCCCGCACTGTAGTCGCACTCACACTTGCATG
CGTACGTTTTCTGGCCCGCATTAAAGAAAGGGCTTACTACGCGCAATTCC
TTTAACTGAAGCCTGACGCTGTCCTTCCCTTGCTCTCCCTTCCATCCTCA
AACGCTTTCCTAACTTTGCTCAATCCTCCCCAACCCTTTCCTGGTCTCAG
ACGCACCAACACAGAGAAGAATGGGCAAGGTTTTCGAAGGCCAGTGTGTC
TCGGGCGCGGAGGTGCTTTGGGTTGCCGTGCATGGCTTTGGTTTTGCCTT
GGCGCTCTTGACCGTGGGAACGGAGCTACTTCATCCCCGCGCGGTGACGG
CTGTGGTGGCGGCCGGCGGGACGTACTTTTTGGTGTTGTCGGAGGTCACG
GCTCACAGCATTTTGCAAGAATGGGCACCCTTGGTAGCCGCAGTCTTGGG
GGCTGGCCTTCTTTCAATGGGCGGGGCGCGGTTTGCGAGTGGGCAATCTT
TCGCGCCTCCCAGCTTGTCCTCGGGCGCCGGACCTGTCATAATCCTTTCC
GTCTTGGCTGGCTACGTGCTCGCCGCATTTCAGATGCAGGCATTGGGTGA
AAAAGGCCTGGAGGATTGGATTCCATTGGCTTTTGCAGCGGGAATCAGCG
GCCTTCTGGCGAACGCTGGCGCTTACTACAGCCCTAACGAGGACTTTTTC
CCTAAAGGTCTTACGTCTGGTGCGGGCCCCCGCATGGTCATGCTGGGTTT
GGGTCTCTTTGTCGGTCCCTCCTTTCTCGGGGCCTTGGAAAGCCACAAAG
GCACGTGGGAGCAGTGGCTTGCCCTGGCAGCCGCGGCGGCAGGATCGGCG
CTTTTCGCATTCGGCGGTGCAAGGTACGCCCAAGGGTTCGAGTTCTTCCC
GGAAGCTCTGACCAGGGGTCCGGTTCCCGCTGCAGGGATGGCCTTGCTGG
CTGCTTTTATCTACACGTCATTCGTTGAACATTTTGAAGCTCGAAAGCCT
GGGGAAGGGGTGGAGCAGTGGATGCCACTGCTCGGGGCGGTGGTGGGAGC
GGGTGTCTTGTCCCATTGCGGCGCGCGTTGGGGTGCAGGAGAGGCCTTCT
TGCCCGCGCTGCTGGAGAGTGGGGCTTACCCTCTTGTGGCCACAGCGGGC
CTGGTTATCTACACAGTATTAGCGTTGCATGCGGTGAATGAACCAAAGGG
TGGGTTGACGATGTTGATGAATTTGGCAGGGGCGGCATCAGTCGTGGGGG
CTTTGTCGGCCCTCAACAAGAGGAAGTTTGTTGCGGCATGAGGATGCGGA
AGGGGGCGGGTGGTTGTACATACTCGAGAGGAAGAGGACGCAGGAGAGAT
AGAGAGAAAAAAGAAAACGGTAAATCGTCTGAGAGAAAGAAAAGGCATAA
AGAGAAGTGGAGTGAAAGCAAGCCGCAAGAAGGCAGCTAAGAGCAAGGTG
GCACACAAGCATATAACAG
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Coding sequence (CDS) from alignment at scaffold_25:255222..256940-

>mRNA_8140 ID=mRNA_8140|Name=jgi.p|Nanoce1779_2|602612|organism=Nannochloropsis oceanica|type=CDS|length=1071bp|location=Sequence derived from alignment at scaffold_25:255222..256940- (Nannochloropsis oceanica)
ATGGGCAAGGTTTTCGAAGGCCAGTGTGTCTCGGGCGCGGAGGTGCTTTG
GGTTGCCGTGCATGGCTTTGGTTTTGCCTTGGCGCTCTTGACCGTGGGAA
CGGAGCTACTTCATCCCCGCGCGGTGACGGCTGTGGTGGCGGCCGGCGGG
ACGTACTTTTTGGTGTTGTCGGAGGTCACGGCTCACAGCATTTTGCAAGA
ATGGGCACCCTTGGTAGCCGCAGTCTTGGGGGCTGGCCTTCTTTCAATGG
GCGGGGCGCGGTTTGCGAGTGGGCAATCTTTCGCGCCTCCCAGCTTGTCC
TCGGGCGCCGGACCTGTCATAATCCTTTCCGTCTTGGCTGGCTACGTGCT
CGCCGCATTTCAGATGCAGGCATTGGGTGAAAAAGGCCTGGAGGATTGGA
TTCCATTGGCTTTTGCAGCGGGAATCAGCGGCCTTCTGGCGAACGCTGGC
GCTTACTACAGCCCTAACGAGGACTTTTTCCCTAAAGGTCTTACGTCTGG
TGCGGGCCCCCGCATGGTCATGCTGGGTTTGGGTCTCTTTGTCGGTCCCT
CCTTTCTCGGGGCCTTGGAAAGCCACAAAGGCACGTGGGAGCAGTGGCTT
GCCCTGGCAGCCGCGGCGGCAGGATCGGCGCTTTTCGCATTCGGCGGTGC
AAGGTACGCCCAAGGGTTCGAGTTCTTCCCGGAAGCTCTGACCAGGGGTC
CGGTTCCCGCTGCAGGGATGGCCTTGCTGGCTGCTTTTATCTACACGTCA
TTCGTTGAACATTTTGAAGCTCGAAAGCCTGGGGAAGGGGTGGAGCAGTG
GATGCCACTGCTCGGGGCGGTGGTGGGAGCGGGTGTCTTGTCCCATTGCG
GCGCGCGTTGGGGTGCAGGAGAGGCCTTCTTGCCCGCGCTGCTGGAGAGT
GGGGCTTACCCTCTTGTGGCCACAGCGGGCCTGGTTATCTACACAGTATT
AGCGTTGCATGCGGTGAATGAACCAAAGGGTGGGTTGACGATGTTGATGA
ATTTGGCAGGGGCGGCATCAGTCGTGGGGGCTTTGTCGGCCCTCAACAAG
AGGAAGTTTGTTGCGGCATGA
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Synonyms
Publications