jgi.p|Nanoce1779_2|142531, mRNA_814 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|142531
Unique NamemRNA_814
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1515
Alignment locationscaffold_2:495622..497136 -

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Properties
Property NameValue
TranscriptId142617
TrackFilteredModels2
ProteinId142531
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:495622..497136 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|142531gene_814Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|142531mRNA_814-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_814CDS_814Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_814 ID=mRNA_814|Name=jgi.p|Nanoce1779_2|142531|organism=Nannochloropsis oceanica|type=mRNA|length=1515bp
GGGACATTATATTGTTGGTCGAGCTTGACAGCAGTGCTGGAGTACGTGGC
CATGGATAGCGAGCAGCCTTTGGTAGCTGTGGCAGCGTATGCCGAGGCAG
AGGAGGAGCAGGAGGAAGGGGAAGCGGAAGGGGGAGCTAGAGGTGGGGAG
GCTTCGGTGATTGCAACGGCGGATGCCGGGGGAGTCGTGCGGTTGTATCG
GCCAGTGGTATGGGAGGAGAGTGTGGGAGGAAGGGAAGGAGTGAGGGAGG
GTGGGGAGGTAGACGACGAAGAGGAGGAGGAGGAGGAGGAGGAACGGAAC
ACCTGGCACCCGGTGGCGGAGTCCCCTTTGGATGGACCGGCGATCGGGGC
GTTTTTCATGCACCCAAGCAAGAGAAAAAATGAGGAAAGCAGTCAAGGTG
GTGGTAGGGATCGGCCACTATTGGTAGTGGTGAGCAACACGGGCATGGTC
GTCCCCTGGCCTGTGGCGACGCTTCCTCGCTACCCGGGGGATGACAATCG
AATTGCGGCCCTACCAAGGCGTGAAGCAGCAGCAGCAACAGCAACAGCAG
GAAAAAGTGCAGCAGCAACAGGAGGAGGAGAAGGAGGAACAGCAGCAGGG
GAAGTGATGGCGATAGGGAGCACACCAAGGGGACCAAAACAAAGCAGCGC
AGAAGGAGGAAGGGAACAAGCGCTACATCCCGAGGATGACGAAGAAGAAT
CAGAAGCAATCCCCCGGCAAGGCCCCCTTCCCTCTCCCTCCCCTCTGGAC
GCAAGTACCCTCCTCGCACCTTTCACCAGCCTCCGAGCCTGGGAACGCGA
CACCCATCTCCTCTCCTCCGCTCAGCAACCCTGCGAATTAAGCACGCCCA
CCCTCCATTCAACCGCCCTCCTCCGCGACCAACTTGCCACTGCCTACCAT
GCAGAATTCCCGTCGGAAGAGATCCATCTTGAAACCAAGTCAGTCCTGGA
AGACGCAGCAACAGCAGTGAATGTCCACCCTCTTTTCAATGTCTACAAAG
ATGTGCCTCCCAGGAATACCTATACCCTCCCCCCTCCTCAATTAATCTCA
AAGCAGATCGATCCTCGTTGGCGTGCCAAGCGGGAAAGGAGGCCGACGGC
CCGGGATTTTTTCACTCCCGACCTGGAGGAGGTGGTGGGTGCTGGGGTAG
GAAGGGGAAGGGAGGAAGGGAGGAGGAGGAGGAGGCAGACGCTGGGGCAG
GAGGGGCCGGTGGGAGGGGTGGAAGATGAGTTGGACAGAGAGAGGGAGAG
TCCGTATTTGGCTTTGTATAGGGGTGCTGTAGGAGAATGAAGTAGGGATG
GCGGGAGTATGTACGCTGATGGAAGTAGGGGTTTAAAAGAAAGGCAAGAC
AGGCCTAAATAATCAGACTTAGATATATGGATGTGCGTTTGTTAGTGGTT
GAATGAAAAACATAGGGGGGGCAGAAAGGGAAAACACAGCACCACAAGCC
AAAAGCAAAGCATGAATGTAGTGCTTACAACCGGTCGTATCCCGGCAAGC
ACTGCTTTTTATTAC
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protein sequence of jgi.p|Nanoce1779_2|142531

>mRNA_814-protein ID=mRNA_814-protein|Name=jgi.p|Nanoce1779_2|142531|organism=Nannochloropsis oceanica|type=polypeptide|length=413bp
MDSEQPLVAVAAYAEAEEEQEEGEAEGGARGGEASVIATADAGGVVRLYR
PVVWEESVGGREGVREGGEVDDEEEEEEEEERNTWHPVAESPLDGPAIGA
FFMHPSKRKNEESSQGGGRDRPLLVVVSNTGMVVPWPVATLPRYPGDDNR
IAALPRREAAAATATAGKSAAATGGGEGGTAAGEVMAIGSTPRGPKQSSA
EGGREQALHPEDDEEESEAIPRQGPLPSPSPLDASTLLAPFTSLRAWERD
THLLSSAQQPCELSTPTLHSTALLRDQLATAYHAEFPSEEIHLETKSVLE
DAATAVNVHPLFNVYKDVPPRNTYTLPPPQLISKQIDPRWRAKRERRPTA
RDFFTPDLEEVVGAGVGRGREEGRRRRRQTLGQEGPVGGVEDELDRERES
PYLALYRGAVGE*
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mRNA from alignment at scaffold_2:495622..497136-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_814 ID=mRNA_814|Name=jgi.p|Nanoce1779_2|142531|organism=Nannochloropsis oceanica|type=mRNA|length=1515bp|location=Sequence derived from alignment at scaffold_2:495622..497136- (Nannochloropsis oceanica)
GGGACATTATATTGTTGGTCGAGCTTGACAGCAGTGCTGGAGTACGTGGC
CATGGATAGCGAGCAGCCTTTGGTAGCTGTGGCAGCGTATGCCGAGGCAG
AGGAGGAGCAGGAGGAAGGGGAAGCGGAAGGGGGAGCTAGAGGTGGGGAG
GCTTCGGTGATTGCAACGGCGGATGCCGGGGGAGTCGTGCGGTTGTATCG
GCCAGTGGTATGGGAGGAGAGTGTGGGAGGAAGGGAAGGAGTGAGGGAGG
GTGGGGAGGTAGACGACGAAGAGGAGGAGGAGGAGGAGGAGGAACGGAAC
ACCTGGCACCCGGTGGCGGAGTCCCCTTTGGATGGACCGGCGATCGGGGC
GTTTTTCATGCACCCAAGCAAGAGAAAAAATGAGGAAAGCAGTCAAGGTG
GTGGTAGGGATCGGCCACTATTGGTAGTGGTGAGCAACACGGGCATGGTC
GTCCCCTGGCCTGTGGCGACGCTTCCTCGCTACCCGGGGGATGACAATCG
AATTGCGGCCCTACCAAGGCGTGAAGCAGCAGCAGCAACAGCAACAGCAG
GAAAAAGTGCAGCAGCAACAGGAGGAGGAGAAGGAGGAACAGCAGCAGGG
GAAGTGATGGCGATAGGGAGCACACCAAGGGGACCAAAACAAAGCAGCGC
AGAAGGAGGAAGGGAACAAGCGCTACATCCCGAGGATGACGAAGAAGAAT
CAGAAGCAATCCCCCGGCAAGGCCCCCTTCCCTCTCCCTCCCCTCTGGAC
GCAAGTACCCTCCTCGCACCTTTCACCAGCCTCCGAGCCTGGGAACGCGA
CACCCATCTCCTCTCCTCCGCTCAGCAACCCTGCGAATTAAGCACGCCCA
CCCTCCATTCAACCGCCCTCCTCCGCGACCAACTTGCCACTGCCTACCAT
GCAGAATTCCCGTCGGAAGAGATCCATCTTGAAACCAAGTCAGTCCTGGA
AGACGCAGCAACAGCAGTGAATGTCCACCCTCTTTTCAATGTCTACAAAG
ATGTGCCTCCCAGGAATACCTATACCCTCCCCCCTCCTCAATTAATCTCA
AAGCAGATCGATCCTCGTTGGCGTGCCAAGCGGGAAAGGAGGCCGACGGC
CCGGGATTTTTTCACTCCCGACCTGGAGGAGGTGGTGGGTGCTGGGGTAG
GAAGGGGAAGGGAGGAAGGGAGGAGGAGGAGGAGGCAGACGCTGGGGCAG
GAGGGGCCGGTGGGAGGGGTGGAAGATGAGTTGGACAGAGAGAGGGAGAG
TCCGTATTTGGCTTTGTATAGGGGTGCTGTAGGAGAATGAAGTAGGGATG
GCGGGAGTATGTACGCTGATGGAAGTAGGGGTTTAAAAGAAAGGCAAGAC
AGGCCTAAATAATCAGACTTAGATATATGGATGTGCGTTTGTTAGTGGTT
GAATGAAAAACATAGGGGGGGCAGAAAGGGAAAACACAGCACCACAAGCC
AAAAGCAAAGCATGAATGTAGTGCTTACAACCGGTCGTATCCCGGCAAGC
ACTGCTTTTTATTAC
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Coding sequence (CDS) from alignment at scaffold_2:495622..497136-

>mRNA_814 ID=mRNA_814|Name=jgi.p|Nanoce1779_2|142531|organism=Nannochloropsis oceanica|type=CDS|length=1239bp|location=Sequence derived from alignment at scaffold_2:495622..497136- (Nannochloropsis oceanica)
ATGGATAGCGAGCAGCCTTTGGTAGCTGTGGCAGCGTATGCCGAGGCAGA
GGAGGAGCAGGAGGAAGGGGAAGCGGAAGGGGGAGCTAGAGGTGGGGAGG
CTTCGGTGATTGCAACGGCGGATGCCGGGGGAGTCGTGCGGTTGTATCGG
CCAGTGGTATGGGAGGAGAGTGTGGGAGGAAGGGAAGGAGTGAGGGAGGG
TGGGGAGGTAGACGACGAAGAGGAGGAGGAGGAGGAGGAGGAACGGAACA
CCTGGCACCCGGTGGCGGAGTCCCCTTTGGATGGACCGGCGATCGGGGCG
TTTTTCATGCACCCAAGCAAGAGAAAAAATGAGGAAAGCAGTCAAGGTGG
TGGTAGGGATCGGCCACTATTGGTAGTGGTGAGCAACACGGGCATGGTCG
TCCCCTGGCCTGTGGCGACGCTTCCTCGCTACCCGGGGGATGACAATCGA
ATTGCGGCCCTACCAAGGCGTGAAGCAGCAGCAGCAACAGCAACAGCAGG
AAAAAGTGCAGCAGCAACAGGAGGAGGAGAAGGAGGAACAGCAGCAGGGG
AAGTGATGGCGATAGGGAGCACACCAAGGGGACCAAAACAAAGCAGCGCA
GAAGGAGGAAGGGAACAAGCGCTACATCCCGAGGATGACGAAGAAGAATC
AGAAGCAATCCCCCGGCAAGGCCCCCTTCCCTCTCCCTCCCCTCTGGACG
CAAGTACCCTCCTCGCACCTTTCACCAGCCTCCGAGCCTGGGAACGCGAC
ACCCATCTCCTCTCCTCCGCTCAGCAACCCTGCGAATTAAGCACGCCCAC
CCTCCATTCAACCGCCCTCCTCCGCGACCAACTTGCCACTGCCTACCATG
CAGAATTCCCGTCGGAAGAGATCCATCTTGAAACCAAGTCAGTCCTGGAA
GACGCAGCAACAGCAGTGAATGTCCACCCTCTTTTCAATGTCTACAAAGA
TGTGCCTCCCAGGAATACCTATACCCTCCCCCCTCCTCAATTAATCTCAA
AGCAGATCGATCCTCGTTGGCGTGCCAAGCGGGAAAGGAGGCCGACGGCC
CGGGATTTTTTCACTCCCGACCTGGAGGAGGTGGTGGGTGCTGGGGTAGG
AAGGGGAAGGGAGGAAGGGAGGAGGAGGAGGAGGCAGACGCTGGGGCAGG
AGGGGCCGGTGGGAGGGGTGGAAGATGAGTTGGACAGAGAGAGGGAGAGT
CCGTATTTGGCTTTGTATAGGGGTGCTGTAGGAGAATGA
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Synonyms
Publications