jgi.p|Nanoce1779_2|602606, mRNA_8139 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|602606
Unique NamemRNA_8139
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1014
Alignment locationscaffold_25:254208..255221 +

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Properties
Property NameValue
TranscriptId602692
TrackFilteredModels2
ProteinId602606
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_25supercontigscaffold_25:254208..255221 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|602606gene_8139Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|602606mRNA_8139-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8139CDS_8139Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8139 ID=mRNA_8139|Name=jgi.p|Nanoce1779_2|602606|organism=Nannochloropsis oceanica|type=mRNA|length=1014bp
TCCTATCACTGCCCTTTTCATCCTCTACTACAGCTTCCTCTTATCCACCT
TCCGCGCCTTCCATGTCTAACTCCGGCTCCAAAGCTCCGCCGCGACAGCA
CCACACGTTTCCCTCTCCTTCCCCCACGACCCGCCCCTCCCTCCACCTCT
ATCCATTCCCCACCGAGTACGCCGACCACTTCGAGAGTCCCTTCCGCGCC
TATCAGGACTTAGAAGCCTTCCTTGTCTGGCTATGCCGAGCCTTGGGAAA
GCAGCAGGGAAAGCCCGCCCTCCATATCTACGATCCTTACTACTGCCAAG
GCGCCGTTGTCGGCCTTCTGGGTCGGCTTGGCTTCTCGCACGTGACTAAT
AAAATGCGGGATTTCTACGCAGATGTGGTGGAGAATCGCATTCCTCGGCA
CGATGTTTTGGTCACCAATCCCCCCTACTCGGGTGACCACAAAGAAAAGG
CTCTGCGGTTCTGCCTGGCTTCCGACAGGCCCTTTTGTCTGCTCCTCCCC
AACTACGTAGCGAATAAGGCGTACTACCTGGACGCCATCGCCTCTCTCCC
CGAAGCTCAAAAACCTTTCTATCTCGTTCCAGCCCAGAAGTATGAGTATC
AGCACCCACAAGGCACGGGCCACGACTCTTCCCCCTTCTTTTCCGTTTGG
TTCTGCCACCCCGGCCCGCTCTCCCGGGAGGAGGAGAAAAACCCGTTGGT
GCCTTGGTTGGAGTCGGCGGCCAACAAAAGCAACCCTCCTACCTGGCGCG
TGGTCTTTTCTGTGGAGGGATTGAGGAGCACGGGTGCGACGCCAAGCTGG
AAACGGCCGAACAACAAACGGAGAAAGAAGATGAAGTTGCTTGCGGCGGT
GGCGGGAGGGGGTGAAGGAGGGGTGTGAAGGGTTGAGACTCGAAGGAAAA
TTACGATGAAGTGAGGAAGGAAAAATATGCTTCGGCTAGTGTGTAAAAAC
ATATTATTGGAGATGGAGGGCATAGGAGGTGATGGGTAAGAGGAAATCAG
AGCAAGTGTGAACA
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protein sequence of jgi.p|Nanoce1779_2|602606

>mRNA_8139-protein ID=mRNA_8139-protein|Name=jgi.p|Nanoce1779_2|602606|organism=Nannochloropsis oceanica|type=polypeptide|length=272bp
MSNSGSKAPPRQHHTFPSPSPTTRPSLHLYPFPTEYADHFESPFRAYQDL
EAFLVWLCRALGKQQGKPALHIYDPYYCQGAVVGLLGRLGFSHVTNKMRD
FYADVVENRIPRHDVLVTNPPYSGDHKEKALRFCLASDRPFCLLLPNYVA
NKAYYLDAIASLPEAQKPFYLVPAQKYEYQHPQGTGHDSSPFFSVWFCHP
GPLSREEEKNPLVPWLESAANKSNPPTWRVVFSVEGLRSTGATPSWKRPN
NKRRKKMKLLAAVAGGGEGGV*
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mRNA from alignment at scaffold_25:254208..255221+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8139 ID=mRNA_8139|Name=jgi.p|Nanoce1779_2|602606|organism=Nannochloropsis oceanica|type=mRNA|length=1014bp|location=Sequence derived from alignment at scaffold_25:254208..255221+ (Nannochloropsis oceanica)
TCCTATCACTGCCCTTTTCATCCTCTACTACAGCTTCCTCTTATCCACCT
TCCGCGCCTTCCATGTCTAACTCCGGCTCCAAAGCTCCGCCGCGACAGCA
CCACACGTTTCCCTCTCCTTCCCCCACGACCCGCCCCTCCCTCCACCTCT
ATCCATTCCCCACCGAGTACGCCGACCACTTCGAGAGTCCCTTCCGCGCC
TATCAGGACTTAGAAGCCTTCCTTGTCTGGCTATGCCGAGCCTTGGGAAA
GCAGCAGGGAAAGCCCGCCCTCCATATCTACGATCCTTACTACTGCCAAG
GCGCCGTTGTCGGCCTTCTGGGTCGGCTTGGCTTCTCGCACGTGACTAAT
AAAATGCGGGATTTCTACGCAGATGTGGTGGAGAATCGCATTCCTCGGCA
CGATGTTTTGGTCACCAATCCCCCCTACTCGGGTGACCACAAAGAAAAGG
CTCTGCGGTTCTGCCTGGCTTCCGACAGGCCCTTTTGTCTGCTCCTCCCC
AACTACGTAGCGAATAAGGCGTACTACCTGGACGCCATCGCCTCTCTCCC
CGAAGCTCAAAAACCTTTCTATCTCGTTCCAGCCCAGAAGTATGAGTATC
AGCACCCACAAGGCACGGGCCACGACTCTTCCCCCTTCTTTTCCGTTTGG
TTCTGCCACCCCGGCCCGCTCTCCCGGGAGGAGGAGAAAAACCCGTTGGT
GCCTTGGTTGGAGTCGGCGGCCAACAAAAGCAACCCTCCTACCTGGCGCG
TGGTCTTTTCTGTGGAGGGATTGAGGAGCACGGGTGCGACGCCAAGCTGG
AAACGGCCGAACAACAAACGGAGAAAGAAGATGAAGTTGCTTGCGGCGGT
GGCGGGAGGGGGTGAAGGAGGGGTGTGAAGGGTTGAGACTCGAAGGAAAA
TTACGATGAAGTGAGGAAGGAAAAATATGCTTCGGCTAGTGTGTAAAAAC
ATATTATTGGAGATGGAGGGCATAGGAGGTGATGGGTAAGAGGAAATCAG
AGCAAGTGTGAACA
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Coding sequence (CDS) from alignment at scaffold_25:254208..255221+

>mRNA_8139 ID=mRNA_8139|Name=jgi.p|Nanoce1779_2|602606|organism=Nannochloropsis oceanica|type=CDS|length=816bp|location=Sequence derived from alignment at scaffold_25:254208..255221+ (Nannochloropsis oceanica)
ATGTCTAACTCCGGCTCCAAAGCTCCGCCGCGACAGCACCACACGTTTCC
CTCTCCTTCCCCCACGACCCGCCCCTCCCTCCACCTCTATCCATTCCCCA
CCGAGTACGCCGACCACTTCGAGAGTCCCTTCCGCGCCTATCAGGACTTA
GAAGCCTTCCTTGTCTGGCTATGCCGAGCCTTGGGAAAGCAGCAGGGAAA
GCCCGCCCTCCATATCTACGATCCTTACTACTGCCAAGGCGCCGTTGTCG
GCCTTCTGGGTCGGCTTGGCTTCTCGCACGTGACTAATAAAATGCGGGAT
TTCTACGCAGATGTGGTGGAGAATCGCATTCCTCGGCACGATGTTTTGGT
CACCAATCCCCCCTACTCGGGTGACCACAAAGAAAAGGCTCTGCGGTTCT
GCCTGGCTTCCGACAGGCCCTTTTGTCTGCTCCTCCCCAACTACGTAGCG
AATAAGGCGTACTACCTGGACGCCATCGCCTCTCTCCCCGAAGCTCAAAA
ACCTTTCTATCTCGTTCCAGCCCAGAAGTATGAGTATCAGCACCCACAAG
GCACGGGCCACGACTCTTCCCCCTTCTTTTCCGTTTGGTTCTGCCACCCC
GGCCCGCTCTCCCGGGAGGAGGAGAAAAACCCGTTGGTGCCTTGGTTGGA
GTCGGCGGCCAACAAAAGCAACCCTCCTACCTGGCGCGTGGTCTTTTCTG
TGGAGGGATTGAGGAGCACGGGTGCGACGCCAAGCTGGAAACGGCCGAAC
AACAAACGGAGAAAGAAGATGAAGTTGCTTGCGGCGGTGGCGGGAGGGGG
TGAAGGAGGGGTGTGA
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Synonyms
Publications