jgi.p|Nanoce1779_2|602605, mRNA_8138 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|602605
Unique NamemRNA_8138
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1263
Alignment locationscaffold_25:252528..253920 -

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Properties
Property NameValue
TranscriptId602691
TrackFilteredModels2
ProteinId602605
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_25supercontigscaffold_25:252528..253920 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|602605gene_8138Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|602605mRNA_8138-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8138CDS_8138Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8138 ID=mRNA_8138|Name=jgi.p|Nanoce1779_2|602605|organism=Nannochloropsis oceanica|type=mRNA|length=1263bp
CTCTTCTTCTTCTTGTGCTTCTTGTGCGTGCATGGGTGCGCCTTCGACAT
GGCCCCTCTTGTCTACTGAACCCTATAATAATAAATTAAATGATTAATGA
TTAGTCTTAGTCCCATGATCAGCCCGTTGCAATCAGCAGAGACCTTGCTG
TCGACATGTTTATTCCTCGCACTCCTTCTCGTCCCTCATGACGCTTTCTT
GGATGTACTAGCTACTGCTCTGTTCAACCCGACGGACACGACAGCATTTC
CTACGTTCCTGAACCTTCTGGCCCCCTTCCCTCTCCACCACACAACACAC
AGCACACAACACCAAGCAGCCCCAAATTAACCATCACAACCATAATAATA
CAGTTTAATCAGCAGCGCATGCCGTCCATGTTTCACTGGGGAGGTGGGAA
CGGGTGGGAGTGGGAGCAGGCGTGGACAGGCGAGGACGCTACGTCCTCTT
CCTACCAGCAGCATCAACAGCAGCGAGAGCACCTCGATGCCAGCCAGCAA
TTTCACCAGCACCCGCTCCAGATGCCACTTCAAGACTACCAAAGTCAGGG
GGCGCGGCACAGGAGGAAGAACGCCGATGCCCCTCCTCCTCTTCCCCCTC
ACCACCGCACCAGCTCCTCCTCGTCCTTGGCTGCCTCATCTTCCTCCTGG
CGTGATCACAACCTCAAACCGCCTCTGACACCCACTCTCTCCCCAACGAT
ATCAACGATGCTTTCCCCGTCGTCTGGTAGCAGCAGCAGTGGCATCAGTA
TCAGCGGCAGCGCTAAAGGAAAGAGCGGCCGCTCGGGATCTTCGTCGTCT
TCCTCCTCCCCCTCCCCTACTTCCTCCTCTATTATTGAGAGTCATCGCAA
GACAGAGATGTGTCGAAACTGGCCGCGTTGCCGATATGGCATTTCCTGCG
CCTTTGCCCACTCCCCCTCCGAGCTGCGCCGCTTGACTCTAGAGGAGATG
GAGCAGAGTGGCCGCATCCCCAACAAGGGCAAGTTCCGCATCTTCCCCTG
TCTCACCTGGGTCATGACTGGCGCCTGTCCTTACCGCGATCGCTGCGTTT
TTATCCACGATGCTAGGGTGAAAGGCGAGCAGGAAGCCTACCTGTTCGCG
ACCCCCGGCAGTAATAACGCTCACCTGTCATCAAAATCACCTCTTTGGTG
GCCAGACTACCTCCCCTCTTCCTCTTCCTCCTCCTTATCCTCCTCCTTCT
CTTCCTCCACTGCTTCCTCCGTTAGTGCCTCTACAACGCAGTACGAGGTG
GTGGGGAAGGATG
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protein sequence of jgi.p|Nanoce1779_2|602605

>mRNA_8138-protein ID=mRNA_8138-protein|Name=jgi.p|Nanoce1779_2|602605|organism=Nannochloropsis oceanica|type=polypeptide|length=78bp
MISLSPMISPLQSAETLLSTCLFLALLLVPHDAFLDVLATALFNPTDTTA
FPTFLNLLAPFPLHHTTHSTQHQAAPN*
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mRNA from alignment at scaffold_25:252528..253920-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8138 ID=mRNA_8138|Name=jgi.p|Nanoce1779_2|602605|organism=Nannochloropsis oceanica|type=mRNA|length=1393bp|location=Sequence derived from alignment at scaffold_25:252528..253920- (Nannochloropsis oceanica)
CTCTTCTTCTTCTTGTGCTTCTTGTGCGTGCATGGGTGCGCCTTCGACAT
GGCCCCTCTTGTCTTGTATGGATGATGTGTATGTGTAGGGTAGGGTTAGA
TAGGAAGGAGGGATCGGTTACCTGGAGACAGCCGCTCGCTGCCCGATGCT
CGCCATCAGAGAGAGTCCTTCGCTACCCCATCCCCTCCATACCTACTGAA
CCCTATAATAATAAATTAAATGATTAATGATTAGTCTTAGTCCCATGATC
AGCCCGTTGCAATCAGCAGAGACCTTGCTGTCGACATGTTTATTCCTCGC
ACTCCTTCTCGTCCCTCATGACGCTTTCTTGGATGTACTAGCTACTGCTC
TGTTCAACCCGACGGACACGACAGCATTTCCTACGTTCCTGAACCTTCTG
GCCCCCTTCCCTCTCCACCACACAACACACAGCACACAACACCAAGCAGC
CCCAAATTAACCATCACAACCATAATAATACAGTTTAATCAGCAGCGCAT
GCCGTCCATGTTTCACTGGGGAGGTGGGAACGGGTGGGAGTGGGAGCAGG
CGTGGACAGGCGAGGACGCTACGTCCTCTTCCTACCAGCAGCATCAACAG
CAGCGAGAGCACCTCGATGCCAGCCAGCAATTTCACCAGCACCCGCTCCA
GATGCCACTTCAAGACTACCAAAGTCAGGGGGCGCGGCACAGGAGGAAGA
ACGCCGATGCCCCTCCTCCTCTTCCCCCTCACCACCGCACCAGCTCCTCC
TCGTCCTTGGCTGCCTCATCTTCCTCCTGGCGTGATCACAACCTCAAACC
GCCTCTGACACCCACTCTCTCCCCAACGATATCAACGATGCTTTCCCCGT
CGTCTGGTAGCAGCAGCAGTGGCATCAGTATCAGCGGCAGCGCTAAAGGA
AAGAGCGGCCGCTCGGGATCTTCGTCGTCTTCCTCCTCCCCCTCCCCTAC
TTCCTCCTCTATTATTGAGAGTCATCGCAAGACAGAGATGTGTCGAAACT
GGCCGCGTTGCCGATATGGCATTTCCTGCGCCTTTGCCCACTCCCCCTCC
GAGCTGCGCCGCTTGACTCTAGAGGAGATGGAGCAGAGTGGCCGCATCCC
CAACAAGGGCAAGTTCCGCATCTTCCCCTGTCTCACCTGGGTCATGACTG
GCGCCTGTCCTTACCGCGATCGCTGCGTTTTTATCCACGATGCTAGGGTG
AAAGGCGAGCAGGAAGCCTACCTGTTCGCGACCCCCGGCAGTAATAACGC
TCACCTGTCATCAAAATCACCTCTTTGGTGGCCAGACTACCTCCCCTCTT
CCTCTTCCTCCTCCTTATCCTCCTCCTTCTCTTCCTCCACTGCTTCCTCC
GTTAGTGCCTCTACAACGCAGTACGAGGTGGTGGGGAAGGATG
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Coding sequence (CDS) from alignment at scaffold_25:252528..253920-

>mRNA_8138 ID=mRNA_8138|Name=jgi.p|Nanoce1779_2|602605|organism=Nannochloropsis oceanica|type=CDS|length=234bp|location=Sequence derived from alignment at scaffold_25:252528..253920- (Nannochloropsis oceanica)
ATGATTAGTCTTAGTCCCATGATCAGCCCGTTGCAATCAGCAGAGACCTT
GCTGTCGACATGTTTATTCCTCGCACTCCTTCTCGTCCCTCATGACGCTT
TCTTGGATGTACTAGCTACTGCTCTGTTCAACCCGACGGACACGACAGCA
TTTCCTACGTTCCTGAACCTTCTGGCCCCCTTCCCTCTCCACCACACAAC
ACACAGCACACAACACCAAGCAGCCCCAAATTAA
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Synonyms
Publications