jgi.p|Nanoce1779_2|602603, mRNA_8136 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|602603
Unique NamemRNA_8136
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1466
Alignment locationscaffold_25:248668..250133 -

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Properties
Property NameValue
TranscriptId602689
TrackFilteredModels2
ProteinId602603
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_25supercontigscaffold_25:248668..250133 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|602603gene_8136Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|602603mRNA_8136-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8136CDS_8136Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8136 ID=mRNA_8136|Name=jgi.p|Nanoce1779_2|602603|organism=Nannochloropsis oceanica|type=mRNA|length=1466bp
ACAGGTCACTGCGCCAGTCTTCTAAACTGTGCGTGCTCCTGTTCCTACGT
CCACTCACTATGCAGCAACAAGAAGCAGTAGCAGCACGTGCTTGGAATAG
CAGACGCGGCTCCACCAAGACTACGACATCTACCTTATCCGTCGCCTTGA
TGGCCGCGCTCTTGGCCAGCAGTGTCGTCCCCGAGGCCAGTGCCTTTCTC
CCCTTGCACTCCTGTTCTTGCCTGCCCTCCCCCTCATCATGCCGCAGCAG
TGTTGCGAGTCATGCCAGGACTCCGGTCAGCACCCCCCAAAGCTTCGGCA
AGCGCGCACTGGTCGTGACGGCCACAGCTGCGTCCTCCTCCAACAAGAAA
AAATCCACGAAGAAAGGGCTGCGCGGCGATGTCCTGCGGGATTCCGGCAG
CAGCACGAGCCGACAGGCCAACGACACGACAGGGTCGGCGGGGGCTGGCT
CTGCGTGTGACCCCAATAACCCTTTCTTTACGTCCGAATTCGGGGAGGAT
GAAGATGAGAACACAGCAGAAGCAGAAGCAGAGACCGAGGCTGAGAAAGA
GAAGCGTTTGCAGGAAGAGGATGAGTGGCTACTGAACTTTAGCCGGGACG
ACCCCGACTTGTACACCGAGACCTTCTCCAAGCCCGAGGAGCGGAAAGCC
CGGGCTGCCGCCACCAAGAACCGGTACGACTTTACTTGTCTGACGGTAGA
AGAAGTGGCACGGTCCTATCAAGTACCAATTTCGTGGGTTGGGGACGCGT
TATGTAACTTTGGGGTGGTGCCGCCCATCCAATGGACGGCGCGAATGGGG
GATTTAATCGATGGAGAGCAGGCTTATGCGTTGCTGGAGGCGATGCACGG
GTGGGATCACGCCATTATGTACGACATGTACACTTGGGACAGCTTGCGGG
AGTTGGCGGCCTCGCACGATTTACCGATTGCGAAGGTGTTGCAGGTTTGT
GACGAGGAGGGCTTTGCCTTGCCATTCGGGCTGAGGAGTCACTTGCGGTT
GGAGCAGTACGCGAGATTGATGCGGCGCCTGGGCCTGGCACGGGAACTGA
CAGACCAGATCAAGGAGAATCACCCCGATCCCGATTATCCCTCCACATGA
AAAGGGAGGTAGGAAGGGAGGGACACGTGGGCGAGAGAGCCCCTTCGCAT
GTACAGTTACTCTTCGTCGTCGTGAGCAAACGGACGAGCGAAGGCAAGAA
AGCAAGAGAGAAGAGTAATTTAGTAAGGGAGGAAAAAAGCATCAAACGAC
CGGGCACCCCCAAAACTTGAAATGAATGGCAGAAAAGGCATGACTATCTG
GCATGTTTCTTTTTCTTCTGTTGTTCTTCGCTTCGGAGCAGTCCTATGGG
TCTCTTTCCTTCCTTGATCCTGCCACCACACGCCCACACACTATGGCGAA
GAAAAATACGAGTGGGAAATGAGGAAGAAGAAAGCAGAGGAGAACGTCCT
TCCGTACACGTATAGC
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protein sequence of jgi.p|Nanoce1779_2|602603

>mRNA_8136-protein ID=mRNA_8136-protein|Name=jgi.p|Nanoce1779_2|602603|organism=Nannochloropsis oceanica|type=polypeptide|length=347bp
MQQQEAVAARAWNSRRGSTKTTTSTLSVALMAALLASSVVPEASAFLPLH
SCSCLPSPSSCRSSVASHARTPVSTPQSFGKRALVVTATAASSSNKKKST
KKGLRGDVLRDSGSSTSRQANDTTGSAGAGSACDPNNPFFTSEFGEDEDE
NTAEAEAETEAEKEKRLQEEDEWLLNFSRDDPDLYTETFSKPEERKARAA
ATKNRYDFTCLTVEEVARSYQVPISWVGDALCNFGVVPPIQWTARMGDLI
DGEQAYALLEAMHGWDHAIMYDMYTWDSLRELAASHDLPIAKVLQVCDEE
GFALPFGLRSHLRLEQYARLMRRLGLARELTDQIKENHPDPDYPST*
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mRNA from alignment at scaffold_25:248668..250133-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8136 ID=mRNA_8136|Name=jgi.p|Nanoce1779_2|602603|organism=Nannochloropsis oceanica|type=mRNA|length=1466bp|location=Sequence derived from alignment at scaffold_25:248668..250133- (Nannochloropsis oceanica)
ACAGGTCACTGCGCCAGTCTTCTAAACTGTGCGTGCTCCTGTTCCTACGT
CCACTCACTATGCAGCAACAAGAAGCAGTAGCAGCACGTGCTTGGAATAG
CAGACGCGGCTCCACCAAGACTACGACATCTACCTTATCCGTCGCCTTGA
TGGCCGCGCTCTTGGCCAGCAGTGTCGTCCCCGAGGCCAGTGCCTTTCTC
CCCTTGCACTCCTGTTCTTGCCTGCCCTCCCCCTCATCATGCCGCAGCAG
TGTTGCGAGTCATGCCAGGACTCCGGTCAGCACCCCCCAAAGCTTCGGCA
AGCGCGCACTGGTCGTGACGGCCACAGCTGCGTCCTCCTCCAACAAGAAA
AAATCCACGAAGAAAGGGCTGCGCGGCGATGTCCTGCGGGATTCCGGCAG
CAGCACGAGCCGACAGGCCAACGACACGACAGGGTCGGCGGGGGCTGGCT
CTGCGTGTGACCCCAATAACCCTTTCTTTACGTCCGAATTCGGGGAGGAT
GAAGATGAGAACACAGCAGAAGCAGAAGCAGAGACCGAGGCTGAGAAAGA
GAAGCGTTTGCAGGAAGAGGATGAGTGGCTACTGAACTTTAGCCGGGACG
ACCCCGACTTGTACACCGAGACCTTCTCCAAGCCCGAGGAGCGGAAAGCC
CGGGCTGCCGCCACCAAGAACCGGTACGACTTTACTTGTCTGACGGTAGA
AGAAGTGGCACGGTCCTATCAAGTACCAATTTCGTGGGTTGGGGACGCGT
TATGTAACTTTGGGGTGGTGCCGCCCATCCAATGGACGGCGCGAATGGGG
GATTTAATCGATGGAGAGCAGGCTTATGCGTTGCTGGAGGCGATGCACGG
GTGGGATCACGCCATTATGTACGACATGTACACTTGGGACAGCTTGCGGG
AGTTGGCGGCCTCGCACGATTTACCGATTGCGAAGGTGTTGCAGGTTTGT
GACGAGGAGGGCTTTGCCTTGCCATTCGGGCTGAGGAGTCACTTGCGGTT
GGAGCAGTACGCGAGATTGATGCGGCGCCTGGGCCTGGCACGGGAACTGA
CAGACCAGATCAAGGAGAATCACCCCGATCCCGATTATCCCTCCACATGA
AAAGGGAGGTAGGAAGGGAGGGACACGTGGGCGAGAGAGCCCCTTCGCAT
GTACAGTTACTCTTCGTCGTCGTGAGCAAACGGACGAGCGAAGGCAAGAA
AGCAAGAGAGAAGAGTAATTTAGTAAGGGAGGAAAAAAGCATCAAACGAC
CGGGCACCCCCAAAACTTGAAATGAATGGCAGAAAAGGCATGACTATCTG
GCATGTTTCTTTTTCTTCTGTTGTTCTTCGCTTCGGAGCAGTCCTATGGG
TCTCTTTCCTTCCTTGATCCTGCCACCACACGCCCACACACTATGGCGAA
GAAAAATACGAGTGGGAAATGAGGAAGAAGAAAGCAGAGGAGAACGTCCT
TCCGTACACGTATAGC
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Coding sequence (CDS) from alignment at scaffold_25:248668..250133-

>mRNA_8136 ID=mRNA_8136|Name=jgi.p|Nanoce1779_2|602603|organism=Nannochloropsis oceanica|type=CDS|length=1041bp|location=Sequence derived from alignment at scaffold_25:248668..250133- (Nannochloropsis oceanica)
ATGCAGCAACAAGAAGCAGTAGCAGCACGTGCTTGGAATAGCAGACGCGG
CTCCACCAAGACTACGACATCTACCTTATCCGTCGCCTTGATGGCCGCGC
TCTTGGCCAGCAGTGTCGTCCCCGAGGCCAGTGCCTTTCTCCCCTTGCAC
TCCTGTTCTTGCCTGCCCTCCCCCTCATCATGCCGCAGCAGTGTTGCGAG
TCATGCCAGGACTCCGGTCAGCACCCCCCAAAGCTTCGGCAAGCGCGCAC
TGGTCGTGACGGCCACAGCTGCGTCCTCCTCCAACAAGAAAAAATCCACG
AAGAAAGGGCTGCGCGGCGATGTCCTGCGGGATTCCGGCAGCAGCACGAG
CCGACAGGCCAACGACACGACAGGGTCGGCGGGGGCTGGCTCTGCGTGTG
ACCCCAATAACCCTTTCTTTACGTCCGAATTCGGGGAGGATGAAGATGAG
AACACAGCAGAAGCAGAAGCAGAGACCGAGGCTGAGAAAGAGAAGCGTTT
GCAGGAAGAGGATGAGTGGCTACTGAACTTTAGCCGGGACGACCCCGACT
TGTACACCGAGACCTTCTCCAAGCCCGAGGAGCGGAAAGCCCGGGCTGCC
GCCACCAAGAACCGGTACGACTTTACTTGTCTGACGGTAGAAGAAGTGGC
ACGGTCCTATCAAGTACCAATTTCGTGGGTTGGGGACGCGTTATGTAACT
TTGGGGTGGTGCCGCCCATCCAATGGACGGCGCGAATGGGGGATTTAATC
GATGGAGAGCAGGCTTATGCGTTGCTGGAGGCGATGCACGGGTGGGATCA
CGCCATTATGTACGACATGTACACTTGGGACAGCTTGCGGGAGTTGGCGG
CCTCGCACGATTTACCGATTGCGAAGGTGTTGCAGGTTTGTGACGAGGAG
GGCTTTGCCTTGCCATTCGGGCTGAGGAGTCACTTGCGGTTGGAGCAGTA
CGCGAGATTGATGCGGCGCCTGGGCCTGGCACGGGAACTGACAGACCAGA
TCAAGGAGAATCACCCCGATCCCGATTATCCCTCCACATGA
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Synonyms
Publications