jgi.p|Nanoce1779_2|202795, mRNA_8135 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|202795
Unique NamemRNA_8135
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length750
Alignment locationscaffold_25:248188..248937 +

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Properties
Property NameValue
TranscriptId202881
TrackFilteredModels2
ProteinId202795
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_25supercontigscaffold_25:248188..248937 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|202795gene_8135Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|202795mRNA_8135-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8135CDS_8135Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8135 ID=mRNA_8135|Name=jgi.p|Nanoce1779_2|202795|organism=Nannochloropsis oceanica|type=mRNA|length=750bp
GCACACCCTTTGATTTCACTCTCACTCTTGAATCCACACGATCGGTTTCA
TGATTAGCACCGGACTCCCTCTCCAAACACATGACATCACATTATTAGTT
CCGTACACGCGAGTAGGAAAAAATACATCTCATTATTTTTTTGTTTGGCT
CTTGAGAAGAAAGATAATAAAATGGCAGCGAGTTTACACATAAGGAAAGG
ATCACTCTTTCTAAACTTTTTCCCCTCCTTCCTCCTTTTATGACGTCTCG
CATGTTAATCGCCTTTCCTCTTCTATCCCTTGTCTTCGGAATGATCGAGG
GAGGGGAGGGAGAAGACGAATGTGTGTGTGTCTGTGGGGAGGACAAAAGG
AAATGTCACGAAAAGAGACATGTGCCGAGGCCTACGAAAATACCTGCCTC
CGCTACTTCCTTTTATATACCCATGTATCATCCTGTGCGAGGGGAGTCCT
TAGTGTCCTCATACCTCACTTTCTTCTGTGGCTATACGTGTACGGAAGGA
CGTTCTCCTCTGCTTTCTTCTTCCTCATTTCCCACTCGTATTTTTCTTCG
CCATAGTGTGTGGGCGTGTGGTGGCAGGATCAAGGAAGGAAAGAGACCCA
TAGGACTGCTCCGAAGCGAAGAACAACAGAAGAAAAAGAAACATGCCAGA
TAGTCATGCCTTTTCTGCCATTCATTTCAAGTTTTGGGGGTGCCCGGTCG
TTTGATGCTTTTTTCCTCCCTTACTAAATTACTCTTCTCTCTTGCTTTCT
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protein sequence of jgi.p|Nanoce1779_2|202795

>mRNA_8135-protein ID=mRNA_8135-protein|Name=jgi.p|Nanoce1779_2|202795|organism=Nannochloropsis oceanica|type=polypeptide|length=138bp
MTSRMLIAFPLLSLVFGMIEGGEGEDECVCVCGEDKRKCHEKRHVPRPTK
IPASATSFYIPMYHPVRGESLVSSYLTFFCGYTCTEGRSPLLSSSSFPTR
IFLRHSVWACGGRIKEGKRPIGLLRSEEQQKKKKHAR*
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mRNA from alignment at scaffold_25:248188..248937+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8135 ID=mRNA_8135|Name=jgi.p|Nanoce1779_2|202795|organism=Nannochloropsis oceanica|type=mRNA|length=750bp|location=Sequence derived from alignment at scaffold_25:248188..248937+ (Nannochloropsis oceanica)
GCACACCCTTTGATTTCACTCTCACTCTTGAATCCACACGATCGGTTTCA
TGATTAGCACCGGACTCCCTCTCCAAACACATGACATCACATTATTAGTT
CCGTACACGCGAGTAGGAAAAAATACATCTCATTATTTTTTTGTTTGGCT
CTTGAGAAGAAAGATAATAAAATGGCAGCGAGTTTACACATAAGGAAAGG
ATCACTCTTTCTAAACTTTTTCCCCTCCTTCCTCCTTTTATGACGTCTCG
CATGTTAATCGCCTTTCCTCTTCTATCCCTTGTCTTCGGAATGATCGAGG
GAGGGGAGGGAGAAGACGAATGTGTGTGTGTCTGTGGGGAGGACAAAAGG
AAATGTCACGAAAAGAGACATGTGCCGAGGCCTACGAAAATACCTGCCTC
CGCTACTTCCTTTTATATACCCATGTATCATCCTGTGCGAGGGGAGTCCT
TAGTGTCCTCATACCTCACTTTCTTCTGTGGCTATACGTGTACGGAAGGA
CGTTCTCCTCTGCTTTCTTCTTCCTCATTTCCCACTCGTATTTTTCTTCG
CCATAGTGTGTGGGCGTGTGGTGGCAGGATCAAGGAAGGAAAGAGACCCA
TAGGACTGCTCCGAAGCGAAGAACAACAGAAGAAAAAGAAACATGCCAGA
TAGTCATGCCTTTTCTGCCATTCATTTCAAGTTTTGGGGGTGCCCGGTCG
TTTGATGCTTTTTTCCTCCCTTACTAAATTACTCTTCTCTCTTGCTTTCT
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Coding sequence (CDS) from alignment at scaffold_25:248188..248937+

>mRNA_8135 ID=mRNA_8135|Name=jgi.p|Nanoce1779_2|202795|organism=Nannochloropsis oceanica|type=CDS|length=414bp|location=Sequence derived from alignment at scaffold_25:248188..248937+ (Nannochloropsis oceanica)
ATGACGTCTCGCATGTTAATCGCCTTTCCTCTTCTATCCCTTGTCTTCGG
AATGATCGAGGGAGGGGAGGGAGAAGACGAATGTGTGTGTGTCTGTGGGG
AGGACAAAAGGAAATGTCACGAAAAGAGACATGTGCCGAGGCCTACGAAA
ATACCTGCCTCCGCTACTTCCTTTTATATACCCATGTATCATCCTGTGCG
AGGGGAGTCCTTAGTGTCCTCATACCTCACTTTCTTCTGTGGCTATACGT
GTACGGAAGGACGTTCTCCTCTGCTTTCTTCTTCCTCATTTCCCACTCGT
ATTTTTCTTCGCCATAGTGTGTGGGCGTGTGGTGGCAGGATCAAGGAAGG
AAAGAGACCCATAGGACTGCTCCGAAGCGAAGAACAACAGAAGAAAAAGA
AACATGCCAGATAG
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Synonyms
Publications