jgi.p|Nanoce1779_2|602602, mRNA_8134 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|602602
Unique NamemRNA_8134
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1470
Alignment locationscaffold_25:246731..248692 +

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Properties
Property NameValue
TranscriptId602688
TrackFilteredModels2
ProteinId602602
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_25supercontigscaffold_25:246731..248692 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|602602gene_8134Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|602602mRNA_8134-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8134CDS_8134Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8134 ID=mRNA_8134|Name=jgi.p|Nanoce1779_2|602602|organism=Nannochloropsis oceanica|type=mRNA|length=1470bp
AACCACAGCACTATCTCGTCCACTCTTTGTCAAGATGGCTGACGCTTTCA
AGCTCCAACTCTCCAAGCTTCGCACCTGGCTGGACAAGTACCCGGCCATG
AAGGTCGTGGAGGAGAAGACCAAGGTGCCCAAGGAGTACATTGTCTGCGG
GGCTGGTTTCGTGGTCTTTATGTTCCTCCTCTTTAGCAACGGTGCCGGCT
TCCTCTGCAACGTGATCGGCTTTCTCTTCCCAGCCTACTACTCGTTCAAG
GCGATTGAGAGCTCCAACAAGGAGGACGACAAGCAGTGGTTGGTGTACTG
GGTGGTGTATTCCTTCTTCACCATCATCGAGGCCTTCGTCTCTGTCATCC
TCTACTGGATCCCCTTCTATTACGCGTTCAAGCTGGCCTTCCTCGTGTAC
CTGGGCTACCCTGGCTGGAATGGCGCCACGCTTATCTACAACAACTTTCT
CAAGGGCCTCCTCCAGAAATACGAGGCCGCCGTCGACACCCACCTGGACG
CTGCCAAGCTCTCGGCCACGGCCACGGCCAACGACAGCCAGAGCAGCGGC
GAGACGGATATCAAGAAGCAGAACTAAATTGCTCTTCGCTGAGAAAGGGA
GAAATGGGCTGTGGAGGACTCGGAGGAGGAGGAAGGAGAGGGAGGGAGAG
AAGGAAGGCAGCCAGCAGGAAAGGCCACAGAATTGGGCGCGGGAAAAAGA
AGAAGCGGGAGTAGCATTCGATTGAAGGCAGTATGTACAGAGGCACCACC
AGAGTGAAAGAGAGAAAGAGACCATCGGCAAGACAAGCATCTGTAACCAC
ACGCACACACGGGGCGCCCCACAAGCCTAGGTGCATGTGTTCTCACACGC
CGAGCAAAAGAGGGTAGAGGCGCATTTTCTCCTCCAATCTTGACAAGCTC
CAATCATAGATAGGTAGAGGAGAAATGAGAGTTATTGTTCTACGTTTGCG
TCGCAGTCACTACCGGCACACCCTTTGATTTCACTCTCACTCTTGAATCC
ACACGATCGGTTTCATGATTAGCACCGGACTCCCTCTCCAAACACATGAC
ATCACATTATTAGTTCCGTACACGCGAGTAGGAAAAAATACATCTCATTA
TTTTTTTGTTTGGCTCTTGAGAAGAAAGATAATAAAATGGCAGCGAGTTT
ACACATAAGGAAAGGATCACTCTTTCTAAACTTTTTCCCCTCCTTCCTCC
TTTTATGACGTCTCGCATGTTAATCGCCTTTCCTCTTCTATCCCTTGTCT
TCGGAATGATCGAGGGAGGGGAGGGAGAAGACGAATGTGTGTGTGTCTGT
GGGGAGGACAAAAGGAAATGTCACGAAAAGAGACATGTGCCGAGGCCTAC
GAAAATACCTGCCTCCGCTACTTCCTTTTATATACCCATGTATCATCCTG
TGCGAGGGGAGTCCTTAGTGTCCTCATACCTCACTTTCTTCTGTGGCTAT
ACGTGTACGGAAGGACGTTC
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protein sequence of jgi.p|Nanoce1779_2|602602

>mRNA_8134-protein ID=mRNA_8134-protein|Name=jgi.p|Nanoce1779_2|602602|organism=Nannochloropsis oceanica|type=polypeptide|length=181bp
MADAFKLQLSKLRTWLDKYPAMKVVEEKTKVPKEYIVCGAGFVVFMFLLF
SNGAGFLCNVIGFLFPAYYSFKAIESSNKEDDKQWLVYWVVYSFFTIIEA
FVSVILYWIPFYYAFKLAFLVYLGYPGWNGATLIYNNFLKGLLQKYEAAV
DTHLDAAKLSATATANDSQSSGETDIKKQN*
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mRNA from alignment at scaffold_25:246731..248692+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8134 ID=mRNA_8134|Name=jgi.p|Nanoce1779_2|602602|organism=Nannochloropsis oceanica|type=mRNA|length=1962bp|location=Sequence derived from alignment at scaffold_25:246731..248692+ (Nannochloropsis oceanica)
AACCACAGCACTATCTCGTCCACTCTTTGTCAAGATGGCTGACGCTTTCA
AGCTCCAACTCTCCAAGCTTCGCACCTGGCTGGACAAGTACCCGGCCATG
AAGGTCGTGGAGGAGAAGACCAAGGTGCCCAAGGAGTACATTGTCTGCGG
GGCTGGTTTCGTGGTCTTTATGTTCCTCCTCTTTAGCAACGGTGCCGGCT
TCCTCTGGTGCGTGGGAGGAGCGGGAGGAGGGGGCGGTGAGAAAGAAGGG
CGGACGTGACGAAATGGAAGAGTAAACTTCTGTTGGCAGCACCTGTATGC
TCACTGGATTTCTTCACCTTGCACCCCCAAACACAGCAACGTGATCGGCT
TTCTCTTCCCAGCCTACTACTCGTTCAAGGCGATTGAGAGCTCCAACAAG
GAGGACGACAAGCAGTGGTACGTATCTTGTAGAGAGAGAAGAAGCAAAGT
GAGGGAAAGATGAAGGATTACGGAAGCAAGCCCACGGTCGTTCCCTTCAG
CGCACAACTGCTTTCTTTAATGTTGCGATAGAGATGTGGAGTTTAAGTGG
GCGCCTCCTCCAAGTGTCGACTGAGGCGCGAGTTTGTCACTTTCCCTCAT
GGTTTCGACAAAGCGCCTCTAACACTAATATGAGTTCTCTTCTCTTTTCT
CTATGCTTTTACACGACAGGTTGGTGTACTGGGTGGTGTATTCCTTCTTC
ACCATCATCGAGGCCTTCGTCTCTGTCATCCTCTACTGGTAAGCTTGACG
AGGGGGGACGGGAAGGGGAATAACTCCGTGCGTTGGGGGCGCGTGTCTCT
ACCTCGGTATGTCACTCACCACTTTTCCCACCTTCCCCCCCCTGGCCAGG
ATCCCCTTCTATTACGCGTTCAAGCTGGCCTTCCTCGTGTACCTGGGCTA
CCCTGGCTGGAATGGCGCCACGCTTATCTACAACAACTTTCTCAAGGGCC
TCCTCCAGAAATACGAGGCCGCCGTCGACACCCACCTGGACGCTGCCAAG
CTCTCGGCCACGGCCACGGCCAACGACAGCCAGAGCAGCGGCGAGACGGA
TATCAAGAAGCAGAACTAAATTGCTCTTCGCTGAGAAAGGGAGAAATGGG
CTGTGGAGGACTCGGAGGAGGAGGAAGGAGAGGGAGGGAGAGAAGGAAGG
CAGCCAGCAGGAAAGGCCACAGAATTGGGCGCGGGAAAAAGAAGAAGCGG
GAGTAGCATTCGATTGAAGGCAGTATGTACAGAGGCACCACCAGAGTGAA
AGAGAGAAAGAGACCATCGGCAAGACAAGCATCTGTAACCACACGCACAC
ACGGGGCGCCCCACAAGCCTAGGTGCATGTGTTCTCACACGCCGAGCAAA
AGAGGGTAGAGGCGCATTTTCTCCTCCAATCTTGACAAGCTCCAATCATA
GATAGGTAGAGGAGAAATGAGAGTTATTGTTCTACGTTTGCGTCGCAGTC
ACTACCGGCACACCCTTTGATTTCACTCTCACTCTTGAATCCACACGATC
GGTTTCATGATTAGCACCGGACTCCCTCTCCAAACACATGACATCACATT
ATTAGTTCCGTACACGCGAGTAGGAAAAAATACATCTCATTATTTTTTTG
TTTGGCTCTTGAGAAGAAAGATAATAAAATGGCAGCGAGTTTACACATAA
GGAAAGGATCACTCTTTCTAAACTTTTTCCCCTCCTTCCTCCTTTTATGA
CGTCTCGCATGTTAATCGCCTTTCCTCTTCTATCCCTTGTCTTCGGAATG
ATCGAGGGAGGGGAGGGAGAAGACGAATGTGTGTGTGTCTGTGGGGAGGA
CAAAAGGAAATGTCACGAAAAGAGACATGTGCCGAGGCCTACGAAAATAC
CTGCCTCCGCTACTTCCTTTTATATACCCATGTATCATCCTGTGCGAGGG
GAGTCCTTAGTGTCCTCATACCTCACTTTCTTCTGTGGCTATACGTGTAC
GGAAGGACGTTC
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Coding sequence (CDS) from alignment at scaffold_25:246731..248692+

>mRNA_8134 ID=mRNA_8134|Name=jgi.p|Nanoce1779_2|602602|organism=Nannochloropsis oceanica|type=CDS|length=2172bp|location=Sequence derived from alignment at scaffold_25:246731..248692+ (Nannochloropsis oceanica)
ATGGCTGACGCTTTCAAGCTCCAACTCTCCAAGCTTCGCACCTGGCTGGA
CAAGTACCCGGCCATGAAGGTCGTGGAGGAGAAGACCAAGGTGCCCAAGG
AGTACATTGTCTGCGGGGCTGGTTTCGTGGTCTTTATGTTCCTCCTCTTT
AGCAACGGTGCCGGCTTCCTCTGCAACGTGATCGGCTTTCTCTTCCCAGC
CTACTACTCGTTCAAGGCGATTGAGAGCTCCAACAAGGAGGACGACAAGC
AGTGGTTGGTGTACTGGGTGGTGTATTCCTTCTTCACCATCATCGAGGCC
TTCGTCTCTGTCATCCTCTACTGGATCCCCTTCTATTACGCGTTCAAGCT
GGCCTTCCTCGTGTACCTGGGCTACCCTGGCTGGAATGGCGCCACGCTTA
TCTACAACAACTTTCTCAAGGGCCTCCTCCAGAAATACGAGGCCGCCGTC
GACACCCACCTGGACGCTGCCAAGCTCTCGGCCACGGCCACGGCCAACGA
CAGCCAGAGCAGCGGCGAGACGGATATCAAGAAGCAGAACTAAATGGCTG
ACGCTTTCAAGCTCCAACTCTCCAAGCTTCGCACCTGGCTGGACAAGTAC
CCGGCCATGAAGGTCGTGGAGGAGAAGACCAAGGTGCCCAAGGAGTACAT
TGTCTGCGGGGCTGGTTTCGTGGTCTTTATGTTCCTCCTCTTTAGCAACG
GTGCCGGCTTCCTCTGCAACGTGATCGGCTTTCTCTTCCCAGCCTACTAC
TCGTTCAAGGCGATTGAGAGCTCCAACAAGGAGGACGACAAGCAGTGGTT
GGTGTACTGGGTGGTGTATTCCTTCTTCACCATCATCGAGGCCTTCGTCT
CTGTCATCCTCTACTGGATCCCCTTCTATTACGCGTTCAAGCTGGCCTTC
CTCGTGTACCTGGGCTACCCTGGCTGGAATGGCGCCACGCTTATCTACAA
CAACTTTCTCAAGGGCCTCCTCCAGAAATACGAGGCCGCCGTCGACACCC
ACCTGGACGCTGCCAAGCTCTCGGCCACGGCCACGGCCAACGACAGCCAG
AGCAGCGGCGAGACGGATATCAAGAAGCAGAACTAAATGGCTGACGCTTT
CAAGCTCCAACTCTCCAAGCTTCGCACCTGGCTGGACAAGTACCCGGCCA
TGAAGGTCGTGGAGGAGAAGACCAAGGTGCCCAAGGAGTACATTGTCTGC
GGGGCTGGTTTCGTGGTCTTTATGTTCCTCCTCTTTAGCAACGGTGCCGG
CTTCCTCTGCAACGTGATCGGCTTTCTCTTCCCAGCCTACTACTCGTTCA
AGGCGATTGAGAGCTCCAACAAGGAGGACGACAAGCAGTGGTTGGTGTAC
TGGGTGGTGTATTCCTTCTTCACCATCATCGAGGCCTTCGTCTCTGTCAT
CCTCTACTGGATCCCCTTCTATTACGCGTTCAAGCTGGCCTTCCTCGTGT
ACCTGGGCTACCCTGGCTGGAATGGCGCCACGCTTATCTACAACAACTTT
CTCAAGGGCCTCCTCCAGAAATACGAGGCCGCCGTCGACACCCACCTGGA
CGCTGCCAAGCTCTCGGCCACGGCCACGGCCAACGACAGCCAGAGCAGCG
GCGAGACGGATATCAAGAAGCAGAACTAAATGGCTGACGCTTTCAAGCTC
CAACTCTCCAAGCTTCGCACCTGGCTGGACAAGTACCCGGCCATGAAGGT
CGTGGAGGAGAAGACCAAGGTGCCCAAGGAGTACATTGTCTGCGGGGCTG
GTTTCGTGGTCTTTATGTTCCTCCTCTTTAGCAACGGTGCCGGCTTCCTC
TGCAACGTGATCGGCTTTCTCTTCCCAGCCTACTACTCGTTCAAGGCGAT
TGAGAGCTCCAACAAGGAGGACGACAAGCAGTGGTTGGTGTACTGGGTGG
TGTATTCCTTCTTCACCATCATCGAGGCCTTCGTCTCTGTCATCCTCTAC
TGGATCCCCTTCTATTACGCGTTCAAGCTGGCCTTCCTCGTGTACCTGGG
CTACCCTGGCTGGAATGGCGCCACGCTTATCTACAACAACTTTCTCAAGG
GCCTCCTCCAGAAATACGAGGCCGCCGTCGACACCCACCTGGACGCTGCC
AAGCTCTCGGCCACGGCCACGGCCAACGACAGCCAGAGCAGCGGCGAGAC
GGATATCAAGAAGCAGAACTAA
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Synonyms
Publications