jgi.p|Nanoce1779_2|602589, mRNA_8130 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|602589
Unique Name	mRNA_8130
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	3859
Alignment location	scaffold_25:233514..237372 -

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Properties


Property Name	Value
TranscriptId	602675
Track	FilteredModels2
ProteinId	602589

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_25	supercontig	scaffold_25:233514..237372 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|602589	gene_8130	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|602589	mRNA_8130-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8130	CDS_8130	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_25:233514..237372-
coding sequence from alignment at scaffold_25:233514..237372-

mRNA sequence

>mRNA_8130 ID=mRNA_8130|Name=jgi.p|Nanoce1779_2|602589|organism=Nannochloropsis oceanica|type=mRNA|length=3859bp
CTGGTTCTGCTTCTGCAAATACTACTACTACTACTACTGCTTCGACTAGC
ACTGCTGTCAACGCTGTTGCTGCTGTTACTGCTGCTGCCGCTGCCGCTCT
GACTCCTGCTGCCACCGTTGTAAATGGAGGCGACGCTTGGATCAGGTAAG
AGCACAACATTGCCTATCTGAACCGTGCCATGGAGGGTAACAGACGCCAA
TTCTTCTTCCTTGACACACGACGCCAGCAAAACGGAGGAACCTGAAGACG
AGGATGGTGACAAATAGGGGGGGAAATCCTCCTCTTTTTTTGTCTCCTGA
TTCCTGGGATTAGTGGGCACGGTGGACGGGACCGATGGGGTGGGAAGGCT
AAGGTCCCACGAGTTAAAGGCTGCTGCATCCGTATTTTCGTCCTCCTCTA
CAGTATCGAGCGGAGAGATATGGCGGGAAGGCATCAGCATATCGATCGCT
GCAAGGGTTGGGTGGGTTGTGCGCGACAGCGCTAGTGTGGTCACAGCAAG
AGGGGCAGGATGCGAGTCATGGGGTGTGTTCAATGCCGCACTGTTGGTGA
TGCTGCGCGTATTGCCCACGTACTTGGCAATAGGAAACAAGCTCCACACG
TCATCCTCCTCCTCTTTCTTCAGCTTGTTTTCACTCTCTTCTTCCTCTTT
ACCCTCCTCAAGTATAGATTCCACTATTGCGGAGCGTCGGTATTCCGGAG
TGCCATCTACCGTGGAAACGGGGGTCATGGACGAGGATGAAGGTGAGACA
GTAGGGCTTTCCAAGGGGCTGATGAGGGTATGTAGACTCTCCGAAGGCGA
CGTCAGGGCGAGAGGAGGCACGAACCAACTTGTGGCAGCTACCACATGCT
GTTCATCGGAGAGGGCACCCTGTAGACAACCACCACTAAAGCTGGAGCGC
GCGGCAGGCGGCGCAAAAACGCTAGTGTTGGGGCTCAGCGAGATCGCGGA
GAAAGTAGAGGTAGTGGGCGCAATTGATGACGACTGGGTTGCTGGCACGA
TGATTTCCGCGTCGATCGTTATATTTTGTTGGAGGGCGTGTGACGGGAGT
GACTGGTCGTCGTCGTTCTCGTTGCTTTTTTCCTCCTCCTCTTCGCCTCC
GCCCACACAGCCATGCACAACTAAGTCCTGAATGTAATCCGCACGATCAT
GCTCATCCTCCTTGAAAACCGAAGAGGAGACAAGAATGGTCTGAATTGAA
GGCGCAACCGCCGTGACACAATGGGAAGGAGTACTTATAAATGGTGCTAC
CATTACGGTTTGTGCCGGCGCTTTGACGTCCGCGAGTATCTCGTCATTTG
CAGCGGACGCGCTATCCAGCGTCTCCATTGGCGGAAGGCGCCCGAAAAGG
GACAAAAATTCACCCTTTATGGCATCTCCACCCTGCTTCCAAGACGTCAT
GACTTTCCCCCCTACTTCTTTCTCAATTGCCTGTCCCGCCGAACCTGCAT
TTCTCATCTTTTCTTTCTCTTCTTCTTCCTCTTTCTCATCTTTTCTCTTC
TTCTCCAACGCTGTATTCAAAGGCTTTGTTGTGGCCTCCTTGGATTCTGC
ATTTGAATGGGAGGAAACGGAAGAGGAAGAGGAAGAGGACGAGGACAAGA
AAGACAAGGAGGACCGGGACGCGATTGAGGAGGACCCTGAGACCGACGAC
ACGGACGAGGCTGTAGAAGAGGGTGAGGAGAAAGAAGAGGAGGACGAGCC
GGAAGAGAAAGGCAGCGAAGACGCCGAAGAAGAAGCAGACGAGGGTTGGG
AGTGCAACTCCTGCCCTGCGCCCAAAGTTATCAACAGTGGGGCTACTTGG
CTCCACCCCCACTCAAAGATGGAGGGCTGATCTCCTGCCTCGGCCGAAAA
TGGCATCGCCGAGCTCGTCACAGCTCTGATGGGCGTAGTGCCATTACTAG
TGGTTGTGAGCATTATATTGGCCGTGGAGCTACTTACGAGGGTAGTGAGG
TCACCCTCTTCCGCTGTCTCAAAGCCATGTAAGCTCTCAAAAGACGACAT
GCGCACATCCCTCCAATTGTAGCTGCCCTCATACGAGCCCACCTCATGAG
CATCCTCAAAGGAGTGGCTTTCCAAGGTCGCAGCCTCCTCGCCCCTCTCC
AAAACCTCACTCCGATCGTCGTCCTCCAAATCTCCCTCGTTCTCACCCTC
GTTCTCACCCTCGTCCTCATCCTCGTCCTCATTGATCCCCTCTTTCTCGC
GCTGAATGGCGATACTTGAGCCCGAGAAGGGGAGCGAGGCGGCTGGCATA
ATGTTTCCAATGTCTATCGATTTAGTACTTACTACCTCGTCTATCCTTTC
TTCTTCCTTCTTGATCTCTTTCACTCCCTCCTCAACATCAACTAAGGGAA
AGGCCTCCCCCACAATCACGGGGAGGCGGATTGGATCGGGCCTTATGGCA
ATGTCTGACGCCGAATGCTTTGGTTGCTGGTCTGGCAGTTGTGAAACTAT
GGAGAATGTCACAGGGGAGGGCAGTTCTGGCGGCAGTGTCACCGATGCTG
CTGAAGAGGCCATCGCCGGTGGAGGCCACTGAGACACTTGCCTCCTCTCC
GCCGTGTTTGGAGAGATGCTGCTCACTGACAACGCTGCAGTTACCAGCGA
CCATCTGATTGGTGGAACCATAGCCTCAGCATCTCTCTCGAAGTCCGCCA
CGAGGACGGACCCGATAAGGTGATTGACCTTATTCTCCTCATATTCCTCT
TCTCCTTCCTCCTCCCCTCCCCTCCCTACCTCCGCCTCTTCCTCTTCTCT
TCTTTCCTCCGTATCATCATCTTCTACCCCTAAATCCCCTAAATTATCCG
CACTAGTGGCCAGAACGACATCAACCGAATTGTTGTCCTCTATCAAAGAC
GAAAGCTCGCCCTCCATCCCTCCCCAGCTGCTGTCCCTACTGCCTCCGGA
GTTGATGGTTTGCTCGTCCGCCTCGTCTTGCACACCGCCCCACGAGTTGT
CTTCCAGTTCCTCCAACTCGGCCACAACCTCCTCCTCCGACGTTAAGAGT
AGCGAATCTGCCACCACGGCAGGTGCCAGAAAATGCAATCCCACCTCCAT
CTCCTCGTCTTCTTCCTCGCCCCCCGGTGCAGAGACATGGAGCGAGGGTG
TGTTTGAGGCACTGCTGCTCGACAGAGAGGACGAGGATAAAAAAGATGGA
GAACAACATGATGACGAGGCCTGACTCTGTATGGCCTCATCCCTTCTTTC
CACCTGTTTTTGCAGTCCAGGCTCGGAGCTCTCCAGCTGAGATGGGACAT
GCTGCGGCGTACCTATGAAAGTGTTTGACGGAGAGCGTGTGGCTGCTGCC
CGAAAGGCGGGGCTGAAGCTACGCAAGGCCGTACCGATGATAAGATTTGG
CGAAACAAGGCTCTCACGACCAATGCTCGAAGATTGAGTCGTGAGAGGCG
GCGCCGGCGACAATAGAGAAGGAGGCGTAGGAACCGCTTCGTGGCCGTTG
GTGCCTGAAGAAGAATTAACATTAGTCACAGATACGGTTACCTGCTTCCG
TGTTAGCGAACCCTGTTCAACGGGACAGTAGAATAAAAGCTGTGATGTTC
CTCCTACCCAGGCCCTCATTTGCTGCTGGTGCGGTGGAGTAGCGCTTCCT
AAGATTTCCTCGCCGCTCCCCCAACCATTGTCCCTTTCAACCCTGATGGG
TGATGGAATAGAGTTCGGAAGTCTGCGCCGTGGCGGGCTGATGGTGGGCA
TTGTGAAGTTTCCTATGTTCATCGACGCTGGCGGTGACGGTATCCGAGGA
TCTGGTGGGGGTTCAGATGGGTGCAGATCCATCGCGCGCTGTGGAAGGAG
TATTTGCGTTGGCCACGGATTAGACAAATGCGCATGGGGTGATATGCCTG
ATATAATCT

protein sequence of jgi.p|Nanoce1779_2|602589

>mRNA_8130-protein ID=mRNA_8130-protein|Name=jgi.p|Nanoce1779_2|602589|organism=Nannochloropsis oceanica|type=polypeptide|length=194bp
MLRVLPTYLAIGNKLHTSSSSSFFSLFSLSSSSLPSSSIDSTIAERRYSG
VPSTVETGVMDEDEGETVGLSKGLMRVCRLSEGDVRARGGTNQLVAATTC
CSSERAPCRQPPLKLERAAGGAKTLVLGLSEIAEKVEVVGAIDDDWVAGT
MISASIVIFCWRACDGSDWSSSFSLLFSSSSSPPPTQPCTTKS*

mRNA from alignment at scaffold_25:233514..237372-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8130 ID=mRNA_8130|Name=jgi.p|Nanoce1779_2|602589|organism=Nannochloropsis oceanica|type=mRNA|length=3859bp|location=Sequence derived from alignment at scaffold_25:233514..237372- (Nannochloropsis oceanica)
CTGGTTCTGCTTCTGCAAATACTACTACTACTACTACTGCTTCGACTAGC
ACTGCTGTCAACGCTGTTGCTGCTGTTACTGCTGCTGCCGCTGCCGCTCT
GACTCCTGCTGCCACCGTTGTAAATGGAGGCGACGCTTGGATCAGGTAAG
AGCACAACATTGCCTATCTGAACCGTGCCATGGAGGGTAACAGACGCCAA
TTCTTCTTCCTTGACACACGACGCCAGCAAAACGGAGGAACCTGAAGACG
AGGATGGTGACAAATAGGGGGGGAAATCCTCCTCTTTTTTTGTCTCCTGA
TTCCTGGGATTAGTGGGCACGGTGGACGGGACCGATGGGGTGGGAAGGCT
AAGGTCCCACGAGTTAAAGGCTGCTGCATCCGTATTTTCGTCCTCCTCTA
CAGTATCGAGCGGAGAGATATGGCGGGAAGGCATCAGCATATCGATCGCT
GCAAGGGTTGGGTGGGTTGTGCGCGACAGCGCTAGTGTGGTCACAGCAAG
AGGGGCAGGATGCGAGTCATGGGGTGTGTTCAATGCCGCACTGTTGGTGA
TGCTGCGCGTATTGCCCACGTACTTGGCAATAGGAAACAAGCTCCACACG
TCATCCTCCTCCTCTTTCTTCAGCTTGTTTTCACTCTCTTCTTCCTCTTT
ACCCTCCTCAAGTATAGATTCCACTATTGCGGAGCGTCGGTATTCCGGAG
TGCCATCTACCGTGGAAACGGGGGTCATGGACGAGGATGAAGGTGAGACA
GTAGGGCTTTCCAAGGGGCTGATGAGGGTATGTAGACTCTCCGAAGGCGA
CGTCAGGGCGAGAGGAGGCACGAACCAACTTGTGGCAGCTACCACATGCT
GTTCATCGGAGAGGGCACCCTGTAGACAACCACCACTAAAGCTGGAGCGC
GCGGCAGGCGGCGCAAAAACGCTAGTGTTGGGGCTCAGCGAGATCGCGGA
GAAAGTAGAGGTAGTGGGCGCAATTGATGACGACTGGGTTGCTGGCACGA
TGATTTCCGCGTCGATCGTTATATTTTGTTGGAGGGCGTGTGACGGGAGT
GACTGGTCGTCGTCGTTCTCGTTGCTTTTTTCCTCCTCCTCTTCGCCTCC
GCCCACACAGCCATGCACAACTAAGTCCTGAATGTAATCCGCACGATCAT
GCTCATCCTCCTTGAAAACCGAAGAGGAGACAAGAATGGTCTGAATTGAA
GGCGCAACCGCCGTGACACAATGGGAAGGAGTACTTATAAATGGTGCTAC
CATTACGGTTTGTGCCGGCGCTTTGACGTCCGCGAGTATCTCGTCATTTG
CAGCGGACGCGCTATCCAGCGTCTCCATTGGCGGAAGGCGCCCGAAAAGG
GACAAAAATTCACCCTTTATGGCATCTCCACCCTGCTTCCAAGACGTCAT
GACTTTCCCCCCTACTTCTTTCTCAATTGCCTGTCCCGCCGAACCTGCAT
TTCTCATCTTTTCTTTCTCTTCTTCTTCCTCTTTCTCATCTTTTCTCTTC
TTCTCCAACGCTGTATTCAAAGGCTTTGTTGTGGCCTCCTTGGATTCTGC
ATTTGAATGGGAGGAAACGGAAGAGGAAGAGGAAGAGGACGAGGACAAGA
AAGACAAGGAGGACCGGGACGCGATTGAGGAGGACCCTGAGACCGACGAC
ACGGACGAGGCTGTAGAAGAGGGTGAGGAGAAAGAAGAGGAGGACGAGCC
GGAAGAGAAAGGCAGCGAAGACGCCGAAGAAGAAGCAGACGAGGGTTGGG
AGTGCAACTCCTGCCCTGCGCCCAAAGTTATCAACAGTGGGGCTACTTGG
CTCCACCCCCACTCAAAGATGGAGGGCTGATCTCCTGCCTCGGCCGAAAA
TGGCATCGCCGAGCTCGTCACAGCTCTGATGGGCGTAGTGCCATTACTAG
TGGTTGTGAGCATTATATTGGCCGTGGAGCTACTTACGAGGGTAGTGAGG
TCACCCTCTTCCGCTGTCTCAAAGCCATGTAAGCTCTCAAAAGACGACAT
GCGCACATCCCTCCAATTGTAGCTGCCCTCATACGAGCCCACCTCATGAG
CATCCTCAAAGGAGTGGCTTTCCAAGGTCGCAGCCTCCTCGCCCCTCTCC
AAAACCTCACTCCGATCGTCGTCCTCCAAATCTCCCTCGTTCTCACCCTC
GTTCTCACCCTCGTCCTCATCCTCGTCCTCATTGATCCCCTCTTTCTCGC
GCTGAATGGCGATACTTGAGCCCGAGAAGGGGAGCGAGGCGGCTGGCATA
ATGTTTCCAATGTCTATCGATTTAGTACTTACTACCTCGTCTATCCTTTC
TTCTTCCTTCTTGATCTCTTTCACTCCCTCCTCAACATCAACTAAGGGAA
AGGCCTCCCCCACAATCACGGGGAGGCGGATTGGATCGGGCCTTATGGCA
ATGTCTGACGCCGAATGCTTTGGTTGCTGGTCTGGCAGTTGTGAAACTAT
GGAGAATGTCACAGGGGAGGGCAGTTCTGGCGGCAGTGTCACCGATGCTG
CTGAAGAGGCCATCGCCGGTGGAGGCCACTGAGACACTTGCCTCCTCTCC
GCCGTGTTTGGAGAGATGCTGCTCACTGACAACGCTGCAGTTACCAGCGA
CCATCTGATTGGTGGAACCATAGCCTCAGCATCTCTCTCGAAGTCCGCCA
CGAGGACGGACCCGATAAGGTGATTGACCTTATTCTCCTCATATTCCTCT
TCTCCTTCCTCCTCCCCTCCCCTCCCTACCTCCGCCTCTTCCTCTTCTCT
TCTTTCCTCCGTATCATCATCTTCTACCCCTAAATCCCCTAAATTATCCG
CACTAGTGGCCAGAACGACATCAACCGAATTGTTGTCCTCTATCAAAGAC
GAAAGCTCGCCCTCCATCCCTCCCCAGCTGCTGTCCCTACTGCCTCCGGA
GTTGATGGTTTGCTCGTCCGCCTCGTCTTGCACACCGCCCCACGAGTTGT
CTTCCAGTTCCTCCAACTCGGCCACAACCTCCTCCTCCGACGTTAAGAGT
AGCGAATCTGCCACCACGGCAGGTGCCAGAAAATGCAATCCCACCTCCAT
CTCCTCGTCTTCTTCCTCGCCCCCCGGTGCAGAGACATGGAGCGAGGGTG
TGTTTGAGGCACTGCTGCTCGACAGAGAGGACGAGGATAAAAAAGATGGA
GAACAACATGATGACGAGGCCTGACTCTGTATGGCCTCATCCCTTCTTTC
CACCTGTTTTTGCAGTCCAGGCTCGGAGCTCTCCAGCTGAGATGGGACAT
GCTGCGGCGTACCTATGAAAGTGTTTGACGGAGAGCGTGTGGCTGCTGCC
CGAAAGGCGGGGCTGAAGCTACGCAAGGCCGTACCGATGATAAGATTTGG
CGAAACAAGGCTCTCACGACCAATGCTCGAAGATTGAGTCGTGAGAGGCG
GCGCCGGCGACAATAGAGAAGGAGGCGTAGGAACCGCTTCGTGGCCGTTG
GTGCCTGAAGAAGAATTAACATTAGTCACAGATACGGTTACCTGCTTCCG
TGTTAGCGAACCCTGTTCAACGGGACAGTAGAATAAAAGCTGTGATGTTC
CTCCTACCCAGGCCCTCATTTGCTGCTGGTGCGGTGGAGTAGCGCTTCCT
AAGATTTCCTCGCCGCTCCCCCAACCATTGTCCCTTTCAACCCTGATGGG
TGATGGAATAGAGTTCGGAAGTCTGCGCCGTGGCGGGCTGATGGTGGGCA
TTGTGAAGTTTCCTATGTTCATCGACGCTGGCGGTGACGGTATCCGAGGA
TCTGGTGGGGGTTCAGATGGGTGCAGATCCATCGCGCGCTGTGGAAGGAG
TATTTGCGTTGGCCACGGATTAGACAAATGCGCATGGGGTGATATGCCTG
ATATAATCT

Coding sequence (CDS) from alignment at scaffold_25:233514..237372-

>mRNA_8130 ID=mRNA_8130|Name=jgi.p|Nanoce1779_2|602589|organism=Nannochloropsis oceanica|type=CDS|length=582bp|location=Sequence derived from alignment at scaffold_25:233514..237372- (Nannochloropsis oceanica)
ATGCTGCGCGTATTGCCCACGTACTTGGCAATAGGAAACAAGCTCCACAC
GTCATCCTCCTCCTCTTTCTTCAGCTTGTTTTCACTCTCTTCTTCCTCTT
TACCCTCCTCAAGTATAGATTCCACTATTGCGGAGCGTCGGTATTCCGGA
GTGCCATCTACCGTGGAAACGGGGGTCATGGACGAGGATGAAGGTGAGAC
AGTAGGGCTTTCCAAGGGGCTGATGAGGGTATGTAGACTCTCCGAAGGCG
ACGTCAGGGCGAGAGGAGGCACGAACCAACTTGTGGCAGCTACCACATGC
TGTTCATCGGAGAGGGCACCCTGTAGACAACCACCACTAAAGCTGGAGCG
CGCGGCAGGCGGCGCAAAAACGCTAGTGTTGGGGCTCAGCGAGATCGCGG
AGAAAGTAGAGGTAGTGGGCGCAATTGATGACGACTGGGTTGCTGGCACG
ATGATTTCCGCGTCGATCGTTATATTTTGTTGGAGGGCGTGTGACGGGAG
TGACTGGTCGTCGTCGTTCTCGTTGCTTTTTTCCTCCTCCTCTTCGCCTC
CGCCCACACAGCCATGCACAACTAAGTCCTGA

Synonyms

Publications