jgi.p|Nanoce1779_2|142549, mRNA_813 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|142549
Unique Name	mRNA_813
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2417
Alignment location	scaffold_2:493067..495620 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	142635
Track	FilteredModels2
ProteinId	142549

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_2	supercontig	scaffold_2:493067..495620 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|142549	gene_813	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|142549	mRNA_813-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_813	CDS_813	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_2:493067..495620+
coding sequence from alignment at scaffold_2:493067..495620+

mRNA sequence

>mRNA_813 ID=mRNA_813|Name=jgi.p|Nanoce1779_2|142549|organism=Nannochloropsis oceanica|type=mRNA|length=2417bp
TTATGTTATGTAAATGGTAGAAGAGCAGTCATTAGGGATTTTGTGGACAT
TTTTTTTTTGCAATTTGTGTGTGGATGTTGAATTGAGGGGGGAAGGTTGT
GGAGGCGAGGGTTGGGTGGATGATGGACGACATGGTCAGCTAGGAGCATA
TATACCCCACCGGCCTCCAAGATTTGCTTCGTACATAAGCCCTTAAGCTA
ATTGAAAGTAATTTTGCACAGTCAAGCTTCCACCCAACGAATTATACAGA
GTTATGGCTTGGCTGAATGCTCATGGCTCACATACAAAGCGCAGGGACGT
ACCTCAAGAAGCTTGCCATACAAATCGACGTCCCAAGTGCAGTCGATCCC
TTTTTGCTGAAAAGCAATATTGAAGCATGGACGATGTCCGTCTCGCTCTG
TGTCAGCCAGGACGCCGTCGCAGTCAAACAAAAGCGCCCAGCTCGCCTTG
TTGCCGATGCCGGCTGCCATCATCCGCACTGTGGCCCTGTTACGAGTTCG
TGGAGTGGCATGCCGCAGAAATGCCTGCGCCGGGGCCAGTAGAAGAGAGG
CAACCACCAGGAAAAAAGAAGGTCTAGCCATGGCGATGGTACCTGTGTGG
TGTATAGGGCATGTGCAACCTGATGAGAATAATGAACGCCGTGGGGGGCC
AAATGGTGGCGCGACGGACTGTCAGTGGCTTTAGGAGACGCCTCTATTTC
TTTCCCCCTGCCTCCTCCTCTGCCTCCACCCCTTCCTTCCACTCCTCCCA
CATGGCACGACGAGCTGTCGTCATGCAAGACGCCGAGCTCTTGACAGGCT
TTGATATTCAAGTCCTGGGCTCTGCGGCCAAGATGCCCACGATCCGCAGC
AGCTGTCCGTGCATTGGTGTACGGGTTGGAGCCAGGCAAATGCTTTTTGA
CTGCGGGGAGGGCACACAACGCCAATTCATCCACTCCATCCTCATTCCCA
GCAAGGTCCAAGGTATTTTCATCACTCACATGCACGGTGATCATATCTTT
GGGCTTCCTGGGATGCTGCTCAGCTTTCTGAGCCTCCTCAACACCACAAC
AAACAACGCCCCTCCGCCCTCATCCCCTTCCTCGTCCTCGCACGCCCAAT
GGGCAGATATACCGAAATCTCGGACCTTGCGCGTTTACGGGCCTGTGGGT
CTGTATAATTACGTGTGTATGACTCTGAATCTTTGTGAGGCGAAAGTAGG
CGTAAACTTGTCAGATGGACGACCAGTGATAGTGGTGCATGAGTTGGTTG
GTGGGGAGCAATTTGGAGGAGGGGGTGGGGGTAACGGGAGGGATCGACGC
GCGGCATTTGTTAAAAGGGATTCGGATTTTGCGATGCCCGGGGTAGTAAG
TCGTGCAATAAGACCTGATGCGGATGGGTTTTGGACGATTCCACCCTTTG
ACGACGAGGTCGGCGGTAGCAGTACTGTGACACCGCACAGTCGGAAACAG
AATTTCGTCGTCCGTGCAGGACAAGTTAAGCATACAGTGCCTACCTTTGG
TTATATCGTGCAGGAGGACGATAAACCAGGGAAAGTGGACGTGGCACAAG
TAAGAGCCCTCGGGTTGAGTCCAGGGCCGGCATACAAGGATTTAACGGAG
GGGAGGGATGTGGTCTTGCCTGATGGGAAGGGAGTGATCAGGGCGAGGGA
GGTTGTGGGTCCACGGAGAAGGGGTAGGAAATTAGCGGTGCTTGGAGATA
CGTGTGATCCATTTTCGATGAGTTCTTTAGTGAGGGACGCTGACGTCCTT
TTTCACGAGGCGACGCTTGAGAATGAGATGCAGGGCATGGCGATAGCAAG
AGGCCACTCGACCCCCTCGATGGCGGCTATGTTTGCGAAGCATGTGAGGG
CACGACGGTTGGTGTTGACACATTTCAGCAATCGATACACGTCGTCGAGT
GGCGAAGGGAGGGAAGAGGGAGGGATTGAGGGGGGAATTGGAGGAGGAGG
AGGAGGAGGAGGGGCGACGTATGGGCCGGGGAAGGAGCAGCAATTTCAAG
CGAGGCCCCGGGGTGCCGTTGCACGGTTGTTACAGCAGGCGGTGGAGGCG
CTGGGGGATGAGAGGCGAGTTCTGGTGGCGGAGGACTTTTTGAAGATTCA
TGTTCCGCCTGAAGGATTTCATATGTTGCCTCTTCCTGCTGCTGCCGCTG
CTGCTGCTGCTGCTAGCACAGCTACAAATGCTACAGAATCGACTGCTGCT
GCTGCTGCCGCTGGTGGTGGGGGTGAAGGTTTTGGTGTTGTTGTTGCTGG
TGGTGATGGAGCAAGGAGTAGGGTTCGGAGAAAGGAGGATATAGAACAGA
TGAGGGAGGAGGAAGCATGTCCGTCATGAACACGTCAGTGTACAGTTTCT
CAAACAAATGAACGAAAGTAATTGCATACATAAATAAATACGTACCTGAA
AGAAAAAGAAATCAAAA

protein sequence of jgi.p|Nanoce1779_2|142549

>mRNA_813-protein ID=mRNA_813-protein|Name=jgi.p|Nanoce1779_2|142549|organism=Nannochloropsis oceanica|type=polypeptide|length=573bp
MCNLMRIMNAVGGQMVARRTVSGFRRRLYFFPPASSSASTPSFHSSHMAR
RAVVMQDAELLTGFDIQVLGSAAKMPTIRSSCPCIGVRVGARQMLFDCGE
GTQRQFIHSILIPSKVQGIFITHMHGDHIFGLPGMLLSFLSLLNTTTNNA
PPPSSPSSSSHAQWADIPKSRTLRVYGPVGLYNYVCMTLNLCEAKVGVNL
SDGRPVIVVHELVGGEQFGGGGGGNGRDRRAAFVKRDSDFAMPGVVSRAI
RPDADGFWTIPPFDDEVGGSSTVTPHSRKQNFVVRAGQVKHTVPTFGYIV
QEDDKPGKVDVAQVRALGLSPGPAYKDLTEGRDVVLPDGKGVIRAREVVG
PRRRGRKLAVLGDTCDPFSMSSLVRDADVLFHEATLENEMQGMAIARGHS
TPSMAAMFAKHVRARRLVLTHFSNRYTSSSGEGREEGGIEGGIGGGGGGG
GATYGPGKEQQFQARPRGAVARLLQQAVEALGDERRVLVAEDFLKIHVPP
EGFHMLPLPAAAAAAAAASTATNATESTAAAAAAGGGGEGFGVVVAGGDG
ARSRVRRKEDIEQMREEEACPS*

mRNA from alignment at scaffold_2:493067..495620+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_813 ID=mRNA_813|Name=jgi.p|Nanoce1779_2|142549|organism=Nannochloropsis oceanica|type=mRNA|length=2554bp|location=Sequence derived from alignment at scaffold_2:493067..495620+ (Nannochloropsis oceanica)
TTATGTTATGTAAATGGTAGAAGAGCAGTCATTAGGGATTTTGTGGACAT
TTTTTTTTTGCAATTTGTGTGTGGATGTTGAATTGAGGGGGGAAGGTTGT
GGAGGCGAGGGTTGGGTGGATGATGGACGACATGGTCAGCTAGGAGCATA
TATACCCCACCGGCCTCCAAGATTTGCTTCGTACATAAGCCCTTAAGCTA
ATTGAAAGTAATTTTGCACAGTCAAGCTTCCACCCAACGAATTATACAGA
GTTATGGCTTGGCTGAATGCTCATGGCTCACATACAAAGCGCAGGGACGT
ACCTCAAGAAGCTTGCCATACAAATCGACGTCCCAAGTGCAGTCGATCCC
TTTTTGCTGAAAAGCAATATTGAAGCATGGACGATGTCCGTCTCGCTCTG
TGTCAGCCAGGACGCCGTCGCAGTCAAACAAAAGCGCCCAGCTCGCCTTG
TTGCCGATGCCGGCTGCCATCATCCGCACTGTGGCCCTGTTACGAGTTCG
TGGAGTGGCATGCCGCAGAAATGCCTGCGCCGGGGCCAGTAGAAGAGAGG
CAACCACCAGGAAAAAAGAAGGTCTAGCCATGGCGATGGTACCTGTGTGG
TGTATAGGGCATGTGAGTGGGTCCTGTCAAAAGGGAGTAATTAGGGCAGG
AGGTTTTTGAGGCGGTTTGGACCTCCCCCCCAAACCTGAGACTCGCAACG
TAGATAGCGACGCACTTTCCTCACAATCTTCCATGCGAACACCCTACAGG
TGCAACCTGATGAGAATAATGAACGCCGTGGGGGGCCAAATGGTGGCGCG
ACGGACTGTCAGTGGCTTTAGGAGACGCCTCTATTTCTTTCCCCCTGCCT
CCTCCTCTGCCTCCACCCCTTCCTTCCACTCCTCCCACATGGCACGACGA
GCTGTCGTCATGCAAGACGCCGAGCTCTTGACAGGCTTTGATATTCAAGT
CCTGGGCTCTGCGGCCAAGATGCCCACGATCCGCAGCAGCTGTCCGTGCA
TTGGTGTACGGGTTGGAGCCAGGCAAATGCTTTTTGACTGCGGGGAGGGC
ACACAACGCCAATTCATCCACTCCATCCTCATTCCCAGCAAGGTCCAAGG
TATTTTCATCACTCACATGCACGGTGATCATATCTTTGGGCTTCCTGGGA
TGCTGCTCAGCTTTCTGAGCCTCCTCAACACCACAACAAACAACGCCCCT
CCGCCCTCATCCCCTTCCTCGTCCTCGCACGCCCAATGGGCAGATATACC
GAAATCTCGGACCTTGCGCGTTTACGGGCCTGTGGGTCTGTATAATTACG
TGTGTATGACTCTGAATCTTTGTGAGGCGAAAGTAGGCGTAAACTTGTCA
GATGGACGACCAGTGATAGTGGTGCATGAGTTGGTTGGTGGGGAGCAATT
TGGAGGAGGGGGTGGGGGTAACGGGAGGGATCGACGCGCGGCATTTGTTA
AAAGGGATTCGGATTTTGCGATGCCCGGGGTAGTAAGTCGTGCAATAAGA
CCTGATGCGGATGGGTTTTGGACGATTCCACCCTTTGACGACGAGGTCGG
CGGTAGCAGTACTGTGACACCGCACAGTCGGAAACAGAATTTCGTCGTCC
GTGCAGGACAAGTTAAGCATACAGTGCCTACCTTTGGTTATATCGTGCAG
GAGGACGATAAACCAGGGAAAGTGGACGTGGCACAAGTAAGAGCCCTCGG
GTTGAGTCCAGGGCCGGCATACAAGGATTTAACGGAGGGGAGGGATGTGG
TCTTGCCTGATGGGAAGGGAGTGATCAGGGCGAGGGAGGTTGTGGGTCCA
CGGAGAAGGGGTAGGAAATTAGCGGTGCTTGGAGATACGTGTGATCCATT
TTCGATGAGTTCTTTAGTGAGGGACGCTGACGTCCTTTTTCACGAGGCGA
CGCTTGAGAATGAGATGCAGGGCATGGCGATAGCAAGAGGCCACTCGACC
CCCTCGATGGCGGCTATGTTTGCGAAGCATGTGAGGGCACGACGGTTGGT
GTTGACACATTTCAGCAATCGATACACGTCGTCGAGTGGCGAAGGGAGGG
AAGAGGGAGGGATTGAGGGGGGAATTGGAGGAGGAGGAGGAGGAGGAGGG
GCGACGTATGGGCCGGGGAAGGAGCAGCAATTTCAAGCGAGGCCCCGGGG
TGCCGTTGCACGGTTGTTACAGCAGGCGGTGGAGGCGCTGGGGGATGAGA
GGCGAGTTCTGGTGGCGGAGGACTTTTTGAAGATTCATGTTCCGCCTGAA
GGATTTCATATGTTGCCTCTTCCTGCTGCTGCCGCTGCTGCTGCTGCTGC
TAGCACAGCTACAAATGCTACAGAATCGACTGCTGCTGCTGCTGCCGCTG
GTGGTGGGGGTGAAGGTTTTGGTGTTGTTGTTGCTGGTGGTGATGGAGCA
AGGAGTAGGGTTCGGAGAAAGGAGGATATAGAACAGATGAGGGAGGAGGA
AGCATGTCCGTCATGAACACGTCAGTGTACAGTTTCTCAAACAAATGAAC
GAAAGTAATTGCATACATAAATAAATACGTACCTGAAAGAAAAAGAAATC
AAAA

Coding sequence (CDS) from alignment at scaffold_2:493067..495620+

>mRNA_813 ID=mRNA_813|Name=jgi.p|Nanoce1779_2|142549|organism=Nannochloropsis oceanica|type=CDS|length=3438bp|location=Sequence derived from alignment at scaffold_2:493067..495620+ (Nannochloropsis oceanica)
ATGTGCAACCTGATGAGAATAATGAACGCCGTGGGGGGCCAAATGGTGGC
GCGACGGACTGTCAGTGGCTTTAGGAGACGCCTCTATTTCTTTCCCCCTG
CCTCCTCCTCTGCCTCCACCCCTTCCTTCCACTCCTCCCACATGGCACGA
CGAGCTGTCGTCATGCAAGACGCCGAGCTCTTGACAGGCTTTGATATTCA
AGTCCTGGGCTCTGCGGCCAAGATGCCCACGATCCGCAGCAGCTGTCCGT
GCATTGGTGTACGGGTTGGAGCCAGGCAAATGCTTTTTGACTGCGGGGAG
GGCACACAACGCCAATTCATCCACTCCATCCTCATTCCCAGCAAGGTCCA
AGGTATTTTCATCACTCACATGCACGGTGATCATATCTTTGGGCTTCCTG
GGATGCTGCTCAGCTTTCTGAGCCTCCTCAACACCACAACAAACAACGCC
CCTCCGCCCTCATCCCCTTCCTCGTCCTCGCACGCCCAATGGGCAGATAT
ACCGAAATCTCGGACCTTGCGCGTTTACGGGCCTGTGGGTCTGTATAATT
ACGTGTGTATGACTCTGAATCTTTGTGAGGCGAAAGTAGGCGTAAACTTG
TCAGATGGACGACCAGTGATAGTGGTGCATGAGTTGGTTGGTGGGGAGCA
ATTTGGAGGAGGGGGTGGGGGTAACGGGAGGGATCGACGCGCGGCATTTG
TTAAAAGGGATTCGGATTTTGCGATGCCCGGGGTAGTAAGTCGTGCAATA
AGACCTGATGCGGATGGGTTTTGGACGATTCCACCCTTTGACGACGAGGT
CGGCGGTAGCAGTACTGTGACACCGCACAGTCGGAAACAGAATTTCGTCG
TCCGTGCAGGACAAGTTAAGCATACAGTGCCTACCTTTGGTTATATCGTG
CAGGAGGACGATAAACCAGGGAAAGTGGACGTGGCACAAGTAAGAGCCCT
CGGGTTGAGTCCAGGGCCGGCATACAAGGATTTAACGGAGGGGAGGGATG
TGGTCTTGCCTGATGGGAAGGGAGTGATCAGGGCGAGGGAGGTTGTGGGT
CCACGGAGAAGGGGTAGGAAATTAGCGGTGCTTGGAGATACGTGTGATCC
ATTTTCGATGAGTTCTTTAGTGAGGGACGCTGACGTCCTTTTTCACGAGG
CGACGCTTGAGAATGAGATGCAGGGCATGGCGATAGCAAGAGGCCACTCG
ACCCCCTCGATGGCGGCTATGTTTGCGAAGCATGTGAGGGCACGACGGTT
GGTGTTGACACATTTCAGCAATCGATACACGTCGTCGAGTGGCGAAGGGA
GGGAAGAGGGAGGGATTGAGGGGGGAATTGGAGGAGGAGGAGGAGGAGGA
GGGGCGACGTATGGGCCGGGGAAGGAGCAGCAATTTCAAGCGAGGCCCCG
GGGTGCCGTTGCACGGTTGTTACAGCAGGCGGTGGAGGCGCTGGGGGATG
AGAGGCGAGTTCTGGTGGCGGAGGACTTTTTGAAGATTCATGTTCCGCCT
GAAGGATTTCATATGTTGCCTCTTCCTGCTGCTGCCGCTGCTGCTGCTGC
TGCTAGCACAGCTACAAATGCTACAGAATCGACTGCTGCTGCTGCTGCCG
CTGGTGGTGGGGGTGAAGGTTTTGGTGTTGTTGTTGCTGGTGGTGATGGA
GCAAGGAGTAGGGTTCGGAGAAAGGAGGATATAGAACAGATGAGGGAGGA
GGAAGCATGTCCGTCATGAATGTGCAACCTGATGAGAATAATGAACGCCG
TGGGGGGCCAAATGGTGGCGCGACGGACTGTCAGTGGCTTTAGGAGACGC
CTCTATTTCTTTCCCCCTGCCTCCTCCTCTGCCTCCACCCCTTCCTTCCA
CTCCTCCCACATGGCACGACGAGCTGTCGTCATGCAAGACGCCGAGCTCT
TGACAGGCTTTGATATTCAAGTCCTGGGCTCTGCGGCCAAGATGCCCACG
ATCCGCAGCAGCTGTCCGTGCATTGGTGTACGGGTTGGAGCCAGGCAAAT
GCTTTTTGACTGCGGGGAGGGCACACAACGCCAATTCATCCACTCCATCC
TCATTCCCAGCAAGGTCCAAGGTATTTTCATCACTCACATGCACGGTGAT
CATATCTTTGGGCTTCCTGGGATGCTGCTCAGCTTTCTGAGCCTCCTCAA
CACCACAACAAACAACGCCCCTCCGCCCTCATCCCCTTCCTCGTCCTCGC
ACGCCCAATGGGCAGATATACCGAAATCTCGGACCTTGCGCGTTTACGGG
CCTGTGGGTCTGTATAATTACGTGTGTATGACTCTGAATCTTTGTGAGGC
GAAAGTAGGCGTAAACTTGTCAGATGGACGACCAGTGATAGTGGTGCATG
AGTTGGTTGGTGGGGAGCAATTTGGAGGAGGGGGTGGGGGTAACGGGAGG
GATCGACGCGCGGCATTTGTTAAAAGGGATTCGGATTTTGCGATGCCCGG
GGTAGTAAGTCGTGCAATAAGACCTGATGCGGATGGGTTTTGGACGATTC
CACCCTTTGACGACGAGGTCGGCGGTAGCAGTACTGTGACACCGCACAGT
CGGAAACAGAATTTCGTCGTCCGTGCAGGACAAGTTAAGCATACAGTGCC
TACCTTTGGTTATATCGTGCAGGAGGACGATAAACCAGGGAAAGTGGACG
TGGCACAAGTAAGAGCCCTCGGGTTGAGTCCAGGGCCGGCATACAAGGAT
TTAACGGAGGGGAGGGATGTGGTCTTGCCTGATGGGAAGGGAGTGATCAG
GGCGAGGGAGGTTGTGGGTCCACGGAGAAGGGGTAGGAAATTAGCGGTGC
TTGGAGATACGTGTGATCCATTTTCGATGAGTTCTTTAGTGAGGGACGCT
GACGTCCTTTTTCACGAGGCGACGCTTGAGAATGAGATGCAGGGCATGGC
GATAGCAAGAGGCCACTCGACCCCCTCGATGGCGGCTATGTTTGCGAAGC
ATGTGAGGGCACGACGGTTGGTGTTGACACATTTCAGCAATCGATACACG
TCGTCGAGTGGCGAAGGGAGGGAAGAGGGAGGGATTGAGGGGGGAATTGG
AGGAGGAGGAGGAGGAGGAGGGGCGACGTATGGGCCGGGGAAGGAGCAGC
AATTTCAAGCGAGGCCCCGGGGTGCCGTTGCACGGTTGTTACAGCAGGCG
GTGGAGGCGCTGGGGGATGAGAGGCGAGTTCTGGTGGCGGAGGACTTTTT
GAAGATTCATGTTCCGCCTGAAGGATTTCATATGTTGCCTCTTCCTGCTG
CTGCCGCTGCTGCTGCTGCTGCTAGCACAGCTACAAATGCTACAGAATCG
ACTGCTGCTGCTGCTGCCGCTGGTGGTGGGGGTGAAGGTTTTGGTGTTGT
TGTTGCTGGTGGTGATGGAGCAAGGAGTAGGGTTCGGAGAAAGGAGGATA
TAGAACAGATGAGGGAGGAGGAAGCATGTCCGTCATGA

Synonyms

Publications