jgi.p|Nanoce1779_2|602590, mRNA_8129 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|602590
Unique Name	mRNA_8129
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1009
Alignment location	scaffold_25:233581..234726 +

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Properties


Property Name	Value
TranscriptId	602676
Track	FilteredModels2
ProteinId	602590

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_25	supercontig	scaffold_25:233581..234726 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|602590	gene_8129	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|602590	mRNA_8129-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8129	CDS_8129	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_25:233581..234726+
coding sequence from alignment at scaffold_25:233581..234726+

mRNA sequence

>mRNA_8129 ID=mRNA_8129|Name=jgi.p|Nanoce1779_2|602590|organism=Nannochloropsis oceanica|type=mRNA|length=1009bp
ACAGCGCGCGATGGATCTGCACCCATCTGAACCCCCACCAGATCCTCGGA
TACCGTCACCGCCAGCGTCGATGAACATAGGAAACTTCACAATGCCCACC
ATCAGCCCGCCACGGCGCAGACTTCCGAACTCTATTCCATCACCCATCAG
GGTTGAAAGGGACAATGGTTGGGGGAGCGGCGAGGAAATCTTAGGAAGCG
CTACTCCACCGCACCAGCAGCAAATGAGGGCCTGGGTAGGAGGAACATCA
CAGCTTTTATTCTACTGTCCCGTTGAACAGGGTTCGCTAACACGGAAGCA
GGTAACCGTATCTGTGACTAATGTTAATTCTTCTTCAGGCACCAACGGCC
ACGAAGCGGTTCCTACGCCTCCTTCTCTATTGTCGCCGGCGCCGCCTCTC
ACGACTCAATCTTCGAGCATTGGTCGTGAGAGCCTTGTTTCGCCAAATCT
TATCATCGGTACGGCCTTGCGTAGCTTCAGCCCCGCCTTTCGGGCAGCAG
CCACACGCTCTCCGTCAAACACTTTCATAGGTACGCCGCAGCATGTCCCA
TCTCAGCTGGAGAGCTCCGAGCCTGGACTGCAAAAACAGGTGGAAAGAAG
GGATGAGGCCATACAGAGTCAGGCCTCGTCATCATGTTGTTCTCCATCTT
TTTTATCCTCGTCCTCTCTGTCGAGCAGCAGTGCCTCAAACACACCCTCG
CTCCATGTCTCTGCACCGGGGGGCGAGGAAGAAGACGAGGAGATGGAGGT
GGGATTGCATTTTCTGGCACCTGCCGTGGTGGCAGATTCGCTACTCTTAA
CGTCGGAGGAGGAGGTTGTGGCCGAGTTGGAGGAACTGGAAGACAACTCG
TGGGGCGGTGTGCAAGACGAGGCGGACGAGCAAACCATCAACTCCGGAGG
CAGTAGGGACAGCAGCTGGGGAGGGATGGAGGGCGAGCTTTCGTCTTTGA
TAGAGGACAACAATTCGGTTGATGTCGTTCTGGCCACTTATCGGGTCCGT
CCTCGTGGC

protein sequence of jgi.p|Nanoce1779_2|602590

>mRNA_8129-protein ID=mRNA_8129-protein|Name=jgi.p|Nanoce1779_2|602590|organism=Nannochloropsis oceanica|type=polypeptide|length=91bp
MLFSIFFILVLSVEQQCLKHTLAPCLCTGGRGRRRGDGGGIAFSGTCRGG
RFATLNVGGGGCGRVGGTGRQLVGRCARRGGRANHQLRRQ*

mRNA from alignment at scaffold_25:233581..234726+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8129 ID=mRNA_8129|Name=jgi.p|Nanoce1779_2|602590|organism=Nannochloropsis oceanica|type=mRNA|length=1146bp|location=Sequence derived from alignment at scaffold_25:233581..234726+ (Nannochloropsis oceanica)
ACAGCGCGCGATGGATCTGCACCCATCTGAACCCCCACCAGATCCTCGGA
TACCGTCACCGCCAGCGTCGATGAACATAGGAAACTTCACAATGCCCACC
ATCAGCCCGCCACGGCGCAGACTTCCGAACTCTATTCCATCACCCATCAG
GGTTGAAAGGGACAATGGTTGGGGGAGCGGCGAGGAAATCTTAGGAAGCG
CTACTCCACCGCACCAGCAGCAAATGAGGGCCTGGGTAGGAGGAACATCA
CAGCTTTTATTCTACTGTCCCGTTGAACAGGGTTCGCTAACACGGAAGCA
GGTAACCGTATCTGTGACTAATGTTAATTCTTCTTCAGGCACCAACGGCC
ACGAAGCGGTTCCTACGCCTCCTTCTCTATTGTCGCCGGCGCCGCCTCTC
ACGACTCAATCTTCGAGCATTGGTCGTGAGAGCCTTGTTTCGCCAAATCT
TATCATCGGTACGGCCTTGCGTAGCTTCAGCCCCGCCTTTCGGGCAGCAG
CCACACGCTCTCCGTCAAACACTTTCATAGGTACGCCGCAGCATGTCCCA
TCTCAGCTGGAGAGCTCCGAGCCTGGACTGCAAAAACAGGTGGAAAGAAG
GGATGAGGCCATACAGAGTCAGGCCTCGTCATCATGTTGTTCTCCATCTT
TTTTATCCTCGTCCTCTCTGTCGAGCAGCAGTGCCTCAAACACACCCTCG
CTCCATGTCTCTGCACCGGGGGGCGAGGAAGAAGACGAGGAGATGGAGGT
GGGATTGCATTTTCTGGCACCTGCCGTGGTGGCAGATTCGCTACTCTTAA
CGTCGGAGGAGGAGGTTGTGGCCGAGTTGGAGGAACTGGAAGACAACTCG
TGGGGCGGTGTGCAAGACGAGGCGGACGAGCAAACCATCAACTCCGGAGG
CAGTAGGGACAGCAGCTGGGGAGGGATGGAGGGCGAGCTTTCGTCTTTGA
TAGAGGACAACAATTCGGTTGATGTCGTTCTGGCCACTAGTGCGGATAAT
TTAGGGGATTTAGGGGTAGAAGATGATGATACGGAGGAAAGAAGAGAAGA
GGAAGAGGCGGAGGTAGGGAGGGGAGGGGAGGAGGAAGGAGAAGAGGAAT
ATGAGGAGAATAAGGTCAATCACCTTATCGGGTCCGTCCTCGTGGC

Coding sequence (CDS) from alignment at scaffold_25:233581..234726+

>mRNA_8129 ID=mRNA_8129|Name=jgi.p|Nanoce1779_2|602590|organism=Nannochloropsis oceanica|type=CDS|length=273bp|location=Sequence derived from alignment at scaffold_25:233581..234726+ (Nannochloropsis oceanica)
ATGTTGTTCTCCATCTTTTTTATCCTCGTCCTCTCTGTCGAGCAGCAGTG
CCTCAAACACACCCTCGCTCCATGTCTCTGCACCGGGGGGCGAGGAAGAA
GACGAGGAGATGGAGGTGGGATTGCATTTTCTGGCACCTGCCGTGGTGGC
AGATTCGCTACTCTTAACGTCGGAGGAGGAGGTTGTGGCCGAGTTGGAGG
AACTGGAAGACAACTCGTGGGGCGGTGTGCAAGACGAGGCGGACGAGCAA
ACCATCAACTCCGGAGGCAGTAG

Synonyms

Publications