jgi.p|Nanoce1779_2|602574, mRNA_8124 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|602574
Unique Name	mRNA_8124
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2273
Alignment location	scaffold_25:220665..223132 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	602660
Track	FilteredModels2
ProteinId	602574

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_25	supercontig	scaffold_25:220665..223132 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|602574	gene_8124	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|602574	mRNA_8124-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8124	CDS_8124	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_25:220665..223132-
coding sequence from alignment at scaffold_25:220665..223132-

mRNA sequence

>mRNA_8124 ID=mRNA_8124|Name=jgi.p|Nanoce1779_2|602574|organism=Nannochloropsis oceanica|type=mRNA|length=2273bp
GTACAATTGTTTCTTTCCCGGAAAGATGCCTCCCCCTGACTTCTGGGTGT
TTTTTTCTTTGCATTCAGGACTAAACACATCAGTCGTACTATTTTTTGAC
GTAGAACAAGCCCGTAAATGCCAGGCACATTCGTTGGTCGATTGGGCTCT
AGCCCCGTACGAGCCAGTCGTGGAGTAAGTCCAGAGACAGCCGTGTGGGA
GCCCCGGCCCATGGCAAGGGAAGCTGCTTGGCAAGCGGCGAGCACGACTA
GTGCTGCCAAGGTATTGTGACTGTGACTGAATCTGCGACTAGCACAAACA
CATCATACTTTTCAAAGGGAATGTATGGTAAGGGGTGTGACTCAAATCAT
CAACAGGAAGGGAGGAAAGTAGGGACAAGTACAAGGCGTAGCTGGAATAA
GAATCGTTGGCCCACGGTGTCTTCGGGAAGCCCTTCGGTCCCCAAGCCAA
GGGGACCCATACTAAACTCTTGATCGTATAGACCCCCTTGCCCCAGTCAT
AGACGCTTCCGGCGAGCAATATGAAAATGCTGTCGCCCAAGTGCTTAATC
AATATTTCCAGAGGCGCTCTATCTCTTCTCCATAAGTCGCAAGCGCTTGA
GCGCTTTTTGCCCCCACACGCGCACTCTGTCATCAAAATCTCAAAGCTCT
TTTAAATAACATCATGAAGTCCTTTTTGACGAAAGCGCATTTTCAGCCTC
ACGGACGGAGCTCACATGCGAATCGTTGGATTTTTCAAAGAAATAAAGTG
CTCGTAGAGGGAGAGAGCGAATGCTTTACCGAAGAAGAGGAGTTGACTGT
TGCCCCAGCATCTAATGATGAGAGGCGAAAACAACCATACTCAAAACCAA
CCGTAGAAAAGCAGGGAGAAGGAGGAGGACAACGATGAAAGGCAGTAACG
GGTGGCAGCGGCGGCAGCGGCCTTTGCGAAACCTGTGCCTGTTCGCATCC
CTACGACGGAGCCGGGCAATAATAATAGACGCCCAGCACCAGAAGCTTGC
TGAAACACTCTCCGCGGCACCAGCACAACCACCACCATCCGCGCCACCCT
TTTCCTCTGCACGACAGAAATATCAGAAGCATCATTCAATGTGTCTCCCC
GCAGCTCAGGAAGAGCTTGCAGAGCTTCATTGCCAGGGGTCGCAAGAGGT
AAAGTCAGATAGCCCTCCTCCCGCCCACGGCAGTAAGCGGCACAGGCCAA
GGCAAGAAGGCGACCACATGAGTTCTCCCCCCTTTCTGTCGTCCATGCCG
CTATCCTGTAGGGCTGTCTCCTCCTCTTCTTTTCATTACCATCACCACTG
GAGCTACTCTCACAACCGCCACCATTACCCTCACCGGCAGCCCGAGACAC
CATGTAGCGCTGACCGTGCAGGAGGGGGAGATATTTCAATACCATCACAA
CTGCCAACCTTTAGCCTCGATTCACCATGTTACGATACGAGTGCTGGCGC
TGGTGGCGGTGGTCATTTGGTGCTGTTGCCAGCGACGGACACGCAAGGTC
CTCTCTCTCTCCGAATGCAGGCAGAAGAGGAGGAAGAAGAAGCAGAAAAA
GACTTCGCTGCTACTACCAGTACTTCCCGTATGGCGACCTGGGAGCTATT
TCCCGGTCCGGGGGTACTAGAGGCTGTGCGTGCAAAGCTGAGACAAGACG
TTGTGCATCTTAAAAATCACGGACAGGAAGGGTCTCATCGCTACGTGATG
CAAGAAATGGCTTTGATGGTTCTAGAGAGAGACAATGTGGAATATGTCGT
TCAAGAAGTGAAGACAGAGGAGAGAAAAAAGAGGAGGGGTTGGAGGAGAG
GGAGAAAAGTGGGGAGTGACACTCAACAGTTGGGATTTGCCCTTGAAGAA
CTACAAAAGGGAGTGATGGCGCCTGCGGGGTTGGATCCACGACAAACGCA
TATTTTGGGCCTTGCTCCTGATATTTTGGCGGATATAAGTCTGATGGTGC
AGGGATATGGAGGGGAGCAGGAGCAGGAGAGATGGGTGCGTGGTGAGGGA
TGAAAGGCAGGGGCGCCACGCATGGATGAGAAAGCGTCGCCTGAGGGGAG
CAAAAGCAGGAGCAAATGCAGGAGATGGGTTGCGTGGTGAGGGAGAGGAG
GGGAAAAGGCAGGGAGTGAATGTTTTGAGTGTTAATGTATTGATTGTAGT
GTCTTATTTAACCGGACGCTCAAAGGATGTAAATAAATATGAAATTGAGC
CTTAAGGAGAAAAGTACGACACTCTCCTTTCATTAAAAAAAATATAAGTC
CCAGATAGGCAGACCGATAACAA

protein sequence of jgi.p|Nanoce1779_2|602574

>mRNA_8124-protein ID=mRNA_8124-protein|Name=jgi.p|Nanoce1779_2|602574|organism=Nannochloropsis oceanica|type=polypeptide|length=373bp
MKGSNGWQRRQRPLRNLCLFASLRRSRAIIIDAQHQKLAETLSAAPAQPP
PSAPPFSSARQKYQKHHSMCLPAAQEELAELHCQGSQEVKSDSPPPAHGS
KRHRPRQEGDHMSSPPFLSSMPLSCRAVSSSSFHYHHHWSYSHNRHHYPH
RQPETPCSADRAGGGDISIPSQLPTFSLDSPCYDTSAGAGGGGHLVLLPA
TDTQGPLSLRMQAEEEEEEAEKDFAATTSTSRMATWELFPGPGVLEAVRA
KLRQDVVHLKNHGQEGSHRYVMQEMALMVLERDNVEYVVQEVKTEERKKR
RGWRRGRKVGSDTQQLGFALEELQKGVMAPAGLDPRQTHILGLAPDILAD
ISLMVQGYGGEQEQERWVRGEG*

mRNA from alignment at scaffold_25:220665..223132-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8124 ID=mRNA_8124|Name=jgi.p|Nanoce1779_2|602574|organism=Nannochloropsis oceanica|type=mRNA|length=2468bp|location=Sequence derived from alignment at scaffold_25:220665..223132- (Nannochloropsis oceanica)
GTACAATTGTTTCTTTCCCGGAAAGATGCCTCCCCCTGACTTCTGGGTGT
TTTTTTCTTTGCATTCAGGACTAAACACATCAGTCGTACTATTTTTTGAC
GTAGAACAAGCCCGTAAATGCCAGGCACATTCGTTGGTCGATTGGGCTCT
AGCCCCGTACGAGCCAGTCGTGGAGTAAGTCCAGAGACAGCCGTGTGGGA
GCCCCGGCCCATGGCAAGGGAAGCTGCTTGGCAAGCGGCGAGCACGACTA
GTGCTGCCAAGGTATTGTGACTGTGACTGAATCTGCGACTAGCACAAACA
CATCATACTTTTCAAAGGGAATGTATGGTAAGGGGTGTGACTCAAATCAT
CAACAGGAAGGGAGGAAAGTAGGGACAAGTACAAGGCGTAGCTGGAATAA
GAATCGTTGGCCCACGGTGTCTTCGGGAAGCCCTTCGGTCCCCAAGCCAA
GGGGACCCATACTAAACTCTTGATCGTATAGACCCCCTTGCCCCAGTCAT
AGACGCTTCCGGCGAGCAATATGAAAATGCTGTCGCCCAAGTGCTTAATC
AATATTTCCAGAGGCGCTCTATCTCTTCTCCATAAGTCGCAAGCGCTTGA
GCGCTTTTTGCCCCCACACGCGCACTCTGTCATCAAAATCTCAAAGCTCT
TTTAAATAACATCATGAAGTCCTTTTTGACGAAAGCGCATTTTCAGCCTC
ACGGACGGAGCTCACATGCGAATCGTTGGATTTTTCAAAGAAATAAAGTG
CTCGTAGAGGGAGAGAGCGAATGCTTTACCGAAGAAGAGGAGTTGACTGT
TGCCCCAGCATCTAATGATGAGAGGCGAAAACAACCATACTCAAAACCAA
CCGTAGAAAAGCAGGGAGAAGGAGGAGGACAACGATGAAAGGCAGTAACG
GGTGGCAGCGGCGGCAGCGGCCTTTGCGAAACCTGTGCCTGTTCGCATCC
CTACGACGGAGCCGGGCAATAATAATAGACGCCCAGCACCAGAAGCTTGC
TGAAACACTCTCCGCGGCACCAGCACAACCACCACCATCCGCGCCACCCT
TTTCCTCTGCACGACAGAAATATCAGAAGCATCATTCAATGTGTCTCCCC
GCAGCTCAGGAAGAGCTTGCAGAGCTTCATTGCCAGGGGTCGCAAGAGGT
ACGCCGGAAAGGTGATGGGACATGTGATTGAGAACAACCTGGCGACGACA
ACTCAAGAGAGGCCACGAAAAACCGCATAACTATAGCCAGATTTGTTCAG
TGTTTGACTCTTCTCATGTCCACTTGCACCACCCCTGCCTTGCTCGTCTC
ACCTCCCCTCGCCCAATCCTCTCCCACGCACACCAACTAATAGGTAAAGT
CAGATAGCCCTCCTCCCGCCCACGGCAGTAAGCGGCACAGGCCAAGGCAA
GAAGGCGACCACATGAGTTCTCCCCCCTTTCTGTCGTCCATGCCGCTATC
CTGTAGGGCTGTCTCCTCCTCTTCTTTTCATTACCATCACCACTGGAGCT
ACTCTCACAACCGCCACCATTACCCTCACCGGCAGCCCGAGACACCATGT
AGCGCTGACCGTGCAGGAGGGGGAGATATTTCAATACCATCACAACTGCC
AACCTTTAGCCTCGATTCACCATGTTACGATACGAGTGCTGGCGCTGGTG
GCGGTGGTCATTTGGTGCTGTTGCCAGCGACGGACACGCAAGGTCCTCTC
TCTCTCCGAATGCAGGCAGAAGAGGAGGAAGAAGAAGCAGAAAAAGACTT
CGCTGCTACTACCAGTACTTCCCGTATGGCGACCTGGGAGCTATTTCCCG
GTCCGGGGGTACTAGAGGCTGTGCGTGCAAAGCTGAGACAAGACGTTGTG
CATCTTAAAAATCACGGACAGGAAGGGTCTCATCGCTACGTGATGCAAGA
AATGGCTTTGATGGTTCTAGAGAGAGACAATGTGGAATATGTCGTTCAAG
AAGTGAAGACAGAGGAGAGAAAAAAGAGGAGGGGTTGGAGGAGAGGGAGA
AAAGTGGGGAGTGACACTCAACAGTTGGGATTTGCCCTTGAAGAACTACA
AAAGGGAGTGATGGCGCCTGCGGGGTTGGATCCACGACAAACGCATATTT
TGGGCCTTGCTCCTGATATTTTGGCGGATATAAGTCTGATGGTGCAGGGA
TATGGAGGGGAGCAGGAGCAGGAGAGATGGGTGCGTGGTGAGGGATGAAA
GGCAGGGGCGCCACGCATGGATGAGAAAGCGTCGCCTGAGGGGAGCAAAA
GCAGGAGCAAATGCAGGAGATGGGTTGCGTGGTGAGGGAGAGGAGGGGAA
AAGGCAGGGAGTGAATGTTTTGAGTGTTAATGTATTGATTGTAGTGTCTT
ATTTAACCGGACGCTCAAAGGATGTAAATAAATATGAAATTGAGCCTTAA
GGAGAAAAGTACGACACTCTCCTTTCATTAAAAAAAATATAAGTCCCAGA
TAGGCAGACCGATAACAA

Coding sequence (CDS) from alignment at scaffold_25:220665..223132-

>mRNA_8124 ID=mRNA_8124|Name=jgi.p|Nanoce1779_2|602574|organism=Nannochloropsis oceanica|type=CDS|length=2238bp|location=Sequence derived from alignment at scaffold_25:220665..223132- (Nannochloropsis oceanica)
GTAAAGTCAGATAGCCCTCCTCCCGCCCACGGCAGTAAGCGGCACAGGCC
AAGGCAAGAAGGCGACCACATGAGTTCTCCCCCCTTTCTGTCGTCCATGC
CGCTATCCTGTAGGGCTGTCTCCTCCTCTTCTTTTCATTACCATCACCAC
TGGAGCTACTCTCACAACCGCCACCATTACCCTCACCGGCAGCCCGAGAC
ACCATGTAGCGCTGACCGTGCAGGAGGGGGAGATATTTCAATACCATCAC
AACTGCCAACCTTTAGCCTCGATTCACCATGTTACGATACGAGTGCTGGC
GCTGGTGGCGGTGGTCATTTGGTGCTGTTGCCAGCGACGGACACGCAAGG
TCCTCTCTCTCTCCGAATGCAGGCAGAAGAGGAGGAAGAAGAAGCAGAAA
AAGACTTCGCTGCTACTACCAGTACTTCCCGTATGGCGACCTGGGAGCTA
TTTCCCGGTCCGGGGGTACTAGAGGCTGTGCGTGCAAAGCTGAGACAAGA
CGTTGTGCATCTTAAAAATCACGGACAGGAAGGGTCTCATCGCTACGTGA
TGCAAGAAATGGCTTTGATGGTTCTAGAGAGAGACAATGTGGAATATGTC
GTTCAAGAAGTGAAGACAGAGGAGAGAAAAAAGAGGAGGGGTTGGAGGAG
AGGGAGAAAAGTGGGGAGTGACACTCAACAGTTGGGATTTGCCCTTGAAG
AACTACAAAAGGGAGTGATGGCGCCTGCGGGGTTGGATCCACGACAAACG
CATATTTTGGGCCTTGCTCCTGATATTTTGGCGGATATAAGTCTGATGGT
GCAGGGATATGGAGGGGAGCAGGAGCAGGAGAGATGGGTGCGTGGTGAGG
GATGAATGAAAGGCAGTAACGGGTGGCAGCGGCGGCAGCGGCCTTTGCGA
AACCTGTGCCTGTTCGCATCCCTACGACGGAGCCGGGCAATAATAATAGA
CGCCCAGCACCAGAAGCTTGCTGAAACACTCTCCGCGGCACCAGCACAAC
CACCACCATCCGCGCCACCCTTTTCCTCTGCACGACAGAAATATCAGAAG
CATCATTCAATGTGTCTCCCCGCAGCTCAGGAAGAGCTTGCAGAGCTTCA
TTGCCAGGGGTCGCAAGAGGTAAAGTCAGATAGCCCTCCTCCCGCCCACG
GCAGTAAGCGGCACAGGCCAAGGCAAGAAGGCGACCACATGAGTTCTCCC
CCCTTTCTGTCGTCCATGCCGCTATCCTGTAGGGCTGTCTCCTCCTCTTC
TTTTCATTACCATCACCACTGGAGCTACTCTCACAACCGCCACCATTACC
CTCACCGGCAGCCCGAGACACCATGTAGCGCTGACCGTGCAGGAGGGGGA
GATATTTCAATACCATCACAACTGCCAACCTTTAGCCTCGATTCACCATG
TTACGATACGAGTGCTGGCGCTGGTGGCGGTGGTCATTTGGTGCTGTTGC
CAGCGACGGACACGCAAGGTCCTCTCTCTCTCCGAATGCAGGCAGAAGAG
GAGGAAGAAGAAGCAGAAAAAGACTTCGCTGCTACTACCAGTACTTCCCG
TATGGCGACCTGGGAGCTATTTCCCGGTCCGGGGGTACTAGAGGCTGTGC
GTGCAAAGCTGAGACAAGACGTTGTGCATCTTAAAAATCACGGACAGGAA
GGGTCTCATCGCTACGTGATGCAAGAAATGGCTTTGATGGTTCTAGAGAG
AGACAATGTGGAATATGTCGTTCAAGAAGTGAAGACAGAGGAGAGAAAAA
AGAGGAGGGGTTGGAGGAGAGGGAGAAAAGTGGGGAGTGACACTCAACAG
TTGGGATTTGCCCTTGAAGAACTACAAAAGGGAGTGATGGCGCCTGCGGG
GTTGGATCCACGACAAACGCATATTTTGGGCCTTGCTCCTGATATTTTGG
CGGATATAAGTCTGATGGTGCAGGGATATGGAGGGGAGCAGGAGCAGGAG
AGATGGGTGCGTGGTGAGGGATGAATGAAAGGCAGTAACGGGTGGCAGCG
GCGGCAGCGGCCTTTGCGAAACCTGTGCCTGTTCGCATCCCTACGACGGA
GCCGGGCAATAATAATAGACGCCCAGCACCAGAAGCTTGCTGAAACACTC
TCCGCGGCACCAGCACAACCACCACCATCCGCGCCACCCTTTTCCTCTGC
ACGACAGAAATATCAGAAGCATCATTCAATGTGTCTCCCCGCAGCTCAGG
AAGAGCTTGCAGAGCTTCATTGCCAGGGGTCGCAAGAG

Synonyms

Publications