jgi.p|Nanoce1779_2|602568, mRNA_8123 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|602568
Unique Name	mRNA_8123
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1818
Alignment location	scaffold_25:218700..220663 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	602654
Track	FilteredModels2
ProteinId	602568

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_25	supercontig	scaffold_25:218700..220663 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|602568	gene_8123	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|602568	mRNA_8123-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8123	CDS_8123	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_25:218700..220663+
coding sequence from alignment at scaffold_25:218700..220663+

mRNA sequence

>mRNA_8123 ID=mRNA_8123|Name=jgi.p|Nanoce1779_2|602568|organism=Nannochloropsis oceanica|type=mRNA|length=1818bp
GGAAAATGGACTGGAGCGAGGTACGTACGACTTCGGACCGGGAGGTATCG
TCCTGTGAGATGTGACATAATGAGTGGTGGTAGGCGACGAGTGAATGCGA
GTCGAGGGACATATTGTAGGGGCATTGTCGTCGTACAAGGGCATGCAAAG
GAGAGGACAGGGCTGGGCCATTAAACCTCCCCGCTCCAACTTTGGTGATG
ATATCATTCATTTACTGCGCGATGTTCGTGTGCTCTTCAAGATACGAGCC
TGCCATTCACACAGCAAGCAAAGCGAATCGGATGGCTGGGACAGGGTCTT
AATCTCATCATCCAAGAAGAGCGAAAGTTGGATATACAGGCCCTTCAAAC
CTCTCAATAGATGATATGTTTGGCTGCCCGTAGATGCATTGCTTGACACG
CACACCACACGAACATAGCCCTCACAGACTTACCCATCCTCTCACAGAGT
AAGCACTATGCATACCTCATCCACCGACAAGGGCATGTTTTCGGACGAGA
ATGGCTCCTTTTTTAGCAACCTCATGGGGATGATCTCGAGCGTTGCTAGC
ACCCCGAAGCCCGCAGGTGGAGACAATGCCACGATCACTGACACCACTGT
TGCTACAGTGACTTCGCCTCCCGAGAACATGGATGAACTTCCCGGCATAG
GTCCTTACATTGCTTTCTGTCGGCAAGACAGGGAGAAGGCCTGGGCCCTG
TACTCTCACGGGCAGGCCATTCGGAAGGAGTTGGGACTTGATACAATCCT
CCAGGAGCCCTACCCTCACTGGGAGACACTGAAGCAGCATTATAGAAAAG
CCATCCATGGGCGCAGCAAGAATGGAGAGGTAGTGCTGGTCGAAAGCATT
GGACGCATGGACTTGGCCTCTTTGAAAAAGGCAGGTGTGAGCCGCAAAGA
GATTGTGCGGTATTACTGCCTGTTTTTTGAGTACATCTTGAGGCAAATGG
GAACTGACCAGACGAAGGTGTTGATGGTCTATGATCTTGATGGGCTGGGG
CTCTTTTCTGTTCTTAACAGTGATTTTCTTGCGACTGTCCGCATGCTGAG
TGATTGTTTGGGGGCGCTCTATCCCCGCGTGATCACTAAGTATGCCCTGG
TTAGGCCGCCGACATTGTTTGAGAAACTCTGGGGGTTGGTTAGTGGGGTC
TTGCCCGCTGGAGCGAAGAATGATATTTTGGTGTGTAAATCTGCGGAGGA
CCTGGAGGCGGTGATCGAGAGGGAGAATATCCCGGGAGAGTATGGGGGGG
GGAGTGATCGCTTGTTGGGAGATGCGGAGGAGATGCGGCAGCTGGCCCGG
TATGTCTTGTCGAAGGGAGGGCAGTAGGGAGAGATGGAGAGGAGGAAAAT
TGTTGCTTGTATGGATTAGAGTGGAAGCGAATGGAGAAAGAAGGCGCGGT
CAGCTGATCTGCTTTCCACCAATTTATACAGTGACGATTTGAGTCACTAA
CGGTCTCCGACGAGGTTCATTCCCTGCACGCTTTCTTCCCCCGATCGGGA
AAGGAGGTGGATTGGAGGGAAGGCTTGACGGGTGAAGGGATGAGAGTGGA
AAGAAGAGGCAACTAAATGTGTCAGGGAAATTAATGAAAGGTATATGCAG
GTTCTGCCATAGAGGAAGCAGAGGCAAGAAGTGGAAAAATGTGAAATCGC
AGGAAGGCGAGCAAAAGGGTTGTTTAACTACTTATATCATTGTGTATATA
TGTAAAAGTGGACGTTGTGTTTGTGTATGAGAGAGTGGGTTGAGATGTCG
AAGGCCTCTTTGGTGAAAGAAGCCAAGCAAGCACGAGGAAAGAATCGAGA
AAACAAGAAGGGCTAAGA

protein sequence of jgi.p|Nanoce1779_2|602568

>mRNA_8123-protein ID=mRNA_8123-protein|Name=jgi.p|Nanoce1779_2|602568|organism=Nannochloropsis oceanica|type=polypeptide|length=290bp
MHTSSTDKGMFSDENGSFFSNLMGMISSVASTPKPAGGDNATITDTTVAT
VTSPPENMDELPGIGPYIAFCRQDREKAWALYSHGQAIRKELGLDTILQE
PYPHWETLKQHYRKAIHGRSKNGEVVLVESIGRMDLASLKKAGVSRKEIV
RYYCLFFEYILRQMGTDQTKVLMVYDLDGLGLFSVLNSDFLATVRMLSDC
LGALYPRVITKYALVRPPTLFEKLWGLVSGVLPAGAKNDILVCKSAEDLE
AVIERENIPGEYGGGSDRLLGDAEEMRQLARYVLSKGGQ*

mRNA from alignment at scaffold_25:218700..220663+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8123 ID=mRNA_8123|Name=jgi.p|Nanoce1779_2|602568|organism=Nannochloropsis oceanica|type=mRNA|length=1964bp|location=Sequence derived from alignment at scaffold_25:218700..220663+ (Nannochloropsis oceanica)
GGAAAATGGACTGGAGCGAGGTACGTACGACTTCGGACCGGGAGGTATCG
TCCTGTGAGATGTGACATAATGAGTGGTGGTAGGCGACGAGTGAATGCGA
GTCGAGGGACATATTGTAGGGGCATTGTCGTCGTACAAGGGCATGCAAAG
GAGAGGACAGGGCTGGGCCATTAAACCTCCCCGCTCCAACTTTGGTGATG
ATATCATTCATTTACTGCGCGATGTTCGTGTGCTCTTCAAGATACGAGCC
TGCCATTCACACAGCAAGCAAAGCGAATCGGATGGCTGGGACAGGGTCTT
AATCTCATCATCCAAGAAGAGCGAAAGTTGGATATACAGGCCCTTCAAAC
CTCTCAATAGATGATATGTTTGGCTGCCCGTAGATGCATTGCTTGACACG
CACACCACACGAACATAGCCCTCACAGACTTACCCATCCTCTCACAGAGT
AAGCACTATGCATACCTCATCCACCGACAAGGGCATGTTTTCGGACGAGA
ATGGCTCCTTTTTTAGCAACCTCATGGGGATGATCTCGAGCGTTGCTAGC
ACCCCGAAGCCCGCAGGTGGAGACAATGCCACGATCACTGACACCACTGT
TGCTACAGTGACTTCGCCTCCCGAGAACATGGATGAACTTCCCGGCATAG
GTCCTTACATTGCTTTCTGTCGGCAAGACAGGGAGAAGGCCTGGGCCCTG
TACTCTCACGGGCAGGCCATTCGGAAGGAGTTGGGACTTGATACAATCCT
CCAGGTAAGCATATAGACGCCGCCGCTTTCAAGCTTCGAGATGCTAAGAA
AGAAACTTACAAATGACCTCTTAAATTTTATTTCATCAAATAATAACTAT
TTTATTTCCATTCCTCCCTACCCCTGCTCCTCCCTTCCCATCTCTCTCAG
GAGCCCTACCCTCACTGGGAGACACTGAAGCAGCATTATAGAAAAGCCAT
CCATGGGCGCAGCAAGAATGGAGAGGTAGTGCTGGTCGAAAGCATTGGAC
GCATGGACTTGGCCTCTTTGAAAAAGGCAGGTGTGAGCCGCAAAGAGATT
GTGCGGTATTACTGCCTGTTTTTTGAGTACATCTTGAGGCAAATGGGAAC
TGACCAGACGAAGGTGTTGATGGTCTATGATCTTGATGGGCTGGGGCTCT
TTTCTGTTCTTAACAGTGATTTTCTTGCGACTGTCCGCATGCTGAGTGAT
TGTTTGGGGGCGCTCTATCCCCGCGTGATCACTAAGTATGCCCTGGTTAG
GCCGCCGACATTGTTTGAGAAACTCTGGGGGTTGGTTAGTGGGGTCTTGC
CCGCTGGAGCGAAGAATGATATTTTGGTGTGTAAATCTGCGGAGGACCTG
GAGGCGGTGATCGAGAGGGAGAATATCCCGGGAGAGTATGGGGGGGGGAG
TGATCGCTTGTTGGGAGATGCGGAGGAGATGCGGCAGCTGGCCCGGTATG
TCTTGTCGAAGGGAGGGCAGTAGGGAGAGATGGAGAGGAGGAAAATTGTT
GCTTGTATGGATTAGAGTGGAAGCGAATGGAGAAAGAAGGCGCGGTCAGC
TGATCTGCTTTCCACCAATTTATACAGTGACGATTTGAGTCACTAACGGT
CTCCGACGAGGTTCATTCCCTGCACGCTTTCTTCCCCCGATCGGGAAAGG
AGGTGGATTGGAGGGAAGGCTTGACGGGTGAAGGGATGAGAGTGGAAAGA
AGAGGCAACTAAATGTGTCAGGGAAATTAATGAAAGGTATATGCAGGTTC
TGCCATAGAGGAAGCAGAGGCAAGAAGTGGAAAAATGTGAAATCGCAGGA
AGGCGAGCAAAAGGGTTGTTTAACTACTTATATCATTGTGTATATATGTA
AAAGTGGACGTTGTGTTTGTGTATGAGAGAGTGGGTTGAGATGTCGAAGG
CCTCTTTGGTGAAAGAAGCCAAGCAAGCACGAGGAAAGAATCGAGAAAAC
AAGAAGGGCTAAGA

Coding sequence (CDS) from alignment at scaffold_25:218700..220663+

>mRNA_8123 ID=mRNA_8123|Name=jgi.p|Nanoce1779_2|602568|organism=Nannochloropsis oceanica|type=CDS|length=1740bp|location=Sequence derived from alignment at scaffold_25:218700..220663+ (Nannochloropsis oceanica)
ATGCATACCTCATCCACCGACAAGGGCATGTTTTCGGACGAGAATGGCTC
CTTTTTTAGCAACCTCATGGGGATGATCTCGAGCGTTGCTAGCACCCCGA
AGCCCGCAGGTGGAGACAATGCCACGATCACTGACACCACTGTTGCTACA
GTGACTTCGCCTCCCGAGAACATGGATGAACTTCCCGGCATAGGTCCTTA
CATTGCTTTCTGTCGGCAAGACAGGGAGAAGGCCTGGGCCCTGTACTCTC
ACGGGCAGGCCATTCGGAAGGAGTTGGGACTTGATACAATCCTCCAGGAG
CCCTACCCTCACTGGGAGACACTGAAGCAGCATTATAGAAAAGCCATCCA
TGGGCGCAGCAAGAATGGAGAGGTAGTGCTGGTCGAAAGCATTGGACGCA
TGGACTTGGCCTCTTTGAAAAAGGCAGGTGTGAGCCGCAAAGAGATTGTG
CGGTATTACTGCCTGTTTTTTGAGTACATCTTGAGGCAAATGGGAACTGA
CCAGACGAAGGTGTTGATGGTCTATGATCTTGATGGGCTGGGGCTCTTTT
CTGTTCTTAACAGTGATTTTCTTGCGACTGTCCGCATGCTGAGTGATTGT
TTGGGGGCGCTCTATCCCCGCGTGATCACTAAGTATGCCCTGGTTAGGCC
GCCGACATTGTTTGAGAAACTCTGGGGGTTGGTTAGTGGGGTCTTGCCCG
CTGGAGCGAAGAATGATATTTTGGTGTGTAAATCTGCGGAGGACCTGGAG
GCGGTGATCGAGAGGGAGAATATCCCGGGAGAGTATGGGGGGGGGAGTGA
TCGCTTGTTGGGAGATGCGGAGGAGATGCGGCAGCTGGCCCGGTATGTCT
TGTCGAAGGGAGGGCAGTAGATGCATACCTCATCCACCGACAAGGGCATG
TTTTCGGACGAGAATGGCTCCTTTTTTAGCAACCTCATGGGGATGATCTC
GAGCGTTGCTAGCACCCCGAAGCCCGCAGGTGGAGACAATGCCACGATCA
CTGACACCACTGTTGCTACAGTGACTTCGCCTCCCGAGAACATGGATGAA
CTTCCCGGCATAGGTCCTTACATTGCTTTCTGTCGGCAAGACAGGGAGAA
GGCCTGGGCCCTGTACTCTCACGGGCAGGCCATTCGGAAGGAGTTGGGAC
TTGATACAATCCTCCAGGAGCCCTACCCTCACTGGGAGACACTGAAGCAG
CATTATAGAAAAGCCATCCATGGGCGCAGCAAGAATGGAGAGGTAGTGCT
GGTCGAAAGCATTGGACGCATGGACTTGGCCTCTTTGAAAAAGGCAGGTG
TGAGCCGCAAAGAGATTGTGCGGTATTACTGCCTGTTTTTTGAGTACATC
TTGAGGCAAATGGGAACTGACCAGACGAAGGTGTTGATGGTCTATGATCT
TGATGGGCTGGGGCTCTTTTCTGTTCTTAACAGTGATTTTCTTGCGACTG
TCCGCATGCTGAGTGATTGTTTGGGGGCGCTCTATCCCCGCGTGATCACT
AAGTATGCCCTGGTTAGGCCGCCGACATTGTTTGAGAAACTCTGGGGGTT
GGTTAGTGGGGTCTTGCCCGCTGGAGCGAAGAATGATATTTTGGTGTGTA
AATCTGCGGAGGACCTGGAGGCGGTGATCGAGAGGGAGAATATCCCGGGA
GAGTATGGGGGGGGGAGTGATCGCTTGTTGGGAGATGCGGAGGAGATGCG
GCAGCTGGCCCGGTATGTCTTGTCGAAGGGAGGGCAGTAG

Synonyms

Publications