jgi.p|Nanoce1779_2|532628, mRNA_8122 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|532628
Unique Name	mRNA_8122
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2070
Alignment location	scaffold_25:216356..218587 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	532714
Track	FilteredModels2
ProteinId	532628

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_25	supercontig	scaffold_25:216356..218587 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|532628	gene_8122	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|532628	mRNA_8122-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8122	CDS_8122	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_25:216356..218587-
coding sequence from alignment at scaffold_25:216356..218587-

mRNA sequence

>mRNA_8122 ID=mRNA_8122|Name=jgi.p|Nanoce1779_2|532628|organism=Nannochloropsis oceanica|type=mRNA|length=2070bp
ATGCAGCAAGGACCGCACAAGCGCCCCTACTCGGCCGGCGGCGGGAGCAG
CGGCGGGGACAAGCCTTACCACAGCAATATCGACGACGTGGGTTGCCCTG
CCAATAAGAAGCGGCACGTCAAGTACGAACGGGCCAAGACCAAGCCTGCT
TTTGACCTGGTTGCACGCGCCAAAGCCATTTGGGCCATTTTCCGCTCCAA
GCGGCTAGACAAAAACGAGCGAGAGAAGCTGTCGGAGGAGCTCTACTCCC
TGATCAAGGGCAAGCTCCACCAGATTGCCGTCAAGCATGACGCTGCCCGC
GTGGTCCAAGCTGCCCTGAAGCATGGGAACAGAATGCAACAAGAGACTTA
CATTACTGAGCTACTTGAATATCTGCTCGAGTTTTCTAAAGTCCAATATG
CGCATTTCATCGTCCTTCGCCTTCTCGACGTCACCTCCACCATCCCCTCC
GAACGCAAGCGGGTCCTGCGCGTCTTTGCCAACAAGGCCCACACGCTCGC
AACCCATGCCGTCGGTGCCAAGGTTTTGGAAGGCATCTTCTCTAACTATC
CGAAGCAAGAAACACAGGCCCTGCGCGCGGAGCTCTACGGGCGAGAGACC
ACCCTCTTGCTGGGCGACCTGACAGGGTCAACCACGACTACCAAAGCCCG
TGACCTGCAAGCGATCCTGGCCGAGTTGCCAGAGCGGAGGGAAAAAATTT
TAAGCAACGTATTAGGGATGCTTCAGAAAATTTTGGTGAAGGACCTAGTG
ACTTTGCCCTTCGTCCAGGAACTGATGTGGGAGTACGTCTGTAATGCCGG
ACCAGTCCTGATAAGGGAATTGGTGCCGACATTAGTGGATTACTTGCTGC
TCTTGACGGGGACGAGACCGGGCTGTAAGGTGTTGGCGGAATGCGCGGCA
TATGGCACACCGAAGGATAGGAAGAAGATGCTCAAAGCATTAAAGGGCTA
TGTAATTCCGACCCTCCTCCACAAGGACGCATATCTCTTCCTCCTCCGCC
TTGCCGATGTGGTGGATGATACAGTGACGTTCAATAAGGTGATCTGGACG
GAGTTGCTGGAAAAGGATGAGAAGGAGGCTGCGATGCTGAGATTCGTTAC
TCATGTCAAGGCGTCCAAGTTGTTGTTGTGTCTTCTAGCCCCGACCAAGA
GGGACACATTTCTGATGAAGGATGAAGTGGAATTGCTAAAGCCCGCATTT
ATTCCCGCGGGAGAGAAAAAAGAGGAGAACGAGGTGATGAAGGGAGTGGG
AGAGGGCGAGGAGGGGGGGAAGAAGACAACAGCAGTAGTAGCAGCCAGAA
AGGTCAGCAAGCCCACCCTCCCCTCTTCCAGCGATACTTCCCCCGTGACG
ATGGTCCCGACCAGTAAAAAAGACGCCGAACGTCGCCGTCAGGAGTTGCT
AGCGCCATTGAAAGACCCTCTGATTAGATTAGGGAGAACGCACGCACACG
AAATGTTGCTCTCGGCGGAGGGTAGTTTTATTTTGTATGAAGTCGCGACT
CGTTGGAGGGACCCGACCTTGCTAGAGGCGATTGCACAGGCCGTAGATGG
AGGGATGCATGTGCCTATGGTAGAGGTTGAGAATGAGAATGCTGGCCCTC
CATATGAGCATCGGATTGCATACAAGACAATCAAACGCCTGATTCTTTTC
GAACTCGGCCCCAAGCCGGTCGACGAAGCCCAAGCAGCAGAAAAAACAAC
AGCGATTGCCCCGCCTGCGCCTCTGTTTTGCGACGCGCTCCTTCGCCATG
TGACGGGTCGTTGGATGAAGTGGCTGTCTTCGATCCGTGGTGGATTTTTG
GTGGAGGCTTTGGTGAAGGTTCCTGTGGTGGGACCTCAGGTAATGAAAGA
GCTAGCCCCACACGAAGCGGAGTTAAAAGAGTTGGCAATCACATTCAAGG
GCGCGGCGGCGGTGCGTGATATCATGGTGAGTGGGGCGAAGACACCGCCG
AAAGAGACGGGGGCTTGGCCCGCTCAAGGAGTAGCAGGAGGAGGATCGGG
AGGAGGGAAGGCGGCAGTTGGCGGGGCGGGGTCCGGGAGGAAAAGCAAAG
GGGGGAAAGGCAAGAAGTAG

protein sequence of jgi.p|Nanoce1779_2|532628

>mRNA_8122-protein ID=mRNA_8122-protein|Name=jgi.p|Nanoce1779_2|532628|organism=Nannochloropsis oceanica|type=polypeptide|length=690bp
MQQGPHKRPYSAGGGSSGGDKPYHSNIDDVGCPANKKRHVKYERAKTKPA
FDLVARAKAIWAIFRSKRLDKNEREKLSEELYSLIKGKLHQIAVKHDAAR
VVQAALKHGNRMQQETYITELLEYLLEFSKVQYAHFIVLRLLDVTSTIPS
ERKRVLRVFANKAHTLATHAVGAKVLEGIFSNYPKQETQALRAELYGRET
TLLLGDLTGSTTTTKARDLQAILAELPERREKILSNVLGMLQKILVKDLV
TLPFVQELMWEYVCNAGPVLIRELVPTLVDYLLLLTGTRPGCKVLAECAA
YGTPKDRKKMLKALKGYVIPTLLHKDAYLFLLRLADVVDDTVTFNKVIWT
ELLEKDEKEAAMLRFVTHVKASKLLLCLLAPTKRDTFLMKDEVELLKPAF
IPAGEKKEENEVMKGVGEGEEGGKKTTAVVAARKVSKPTLPSSSDTSPVT
MVPTSKKDAERRRQELLAPLKDPLIRLGRTHAHEMLLSAEGSFILYEVAT
RWRDPTLLEAIAQAVDGGMHVPMVEVENENAGPPYEHRIAYKTIKRLILF
ELGPKPVDEAQAAEKTTAIAPPAPLFCDALLRHVTGRWMKWLSSIRGGFL
VEALVKVPVVGPQVMKELAPHEAELKELAITFKGAAAVRDIMVSGAKTPP
KETGAWPAQGVAGGGSGGGKAAVGGAGSGRKSKGGKGKK*

mRNA from alignment at scaffold_25:216356..218587-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8122 ID=mRNA_8122|Name=jgi.p|Nanoce1779_2|532628|organism=Nannochloropsis oceanica|type=mRNA|length=2232bp|location=Sequence derived from alignment at scaffold_25:216356..218587- (Nannochloropsis oceanica)
ATGCAGCAAGGACCGCACAAGCGCCCCTACTCGGCCGGCGGCGGGAGCAG
CGGCGGGGACAAGCCTTACCACAGCAATATCGACGACGTGGGTTGCCCTG
CCAATAAGAAGCGGCACGTCAAGTACGAACGGGCCAAGACCAAGCCTGCT
TTTGACCTGGTTGCACGCGCCAAAGCCATTTGGGCCATTTTCCGCTCCAA
GCGGCTAGACAAAAACGAGCGAGAGAAGCTGTCGGAGGAGCTCTACTCCC
TGATCAAGGGCAAGCTCCACCAGATTGCCGTCAAGCATGACGCTGCCCGC
GTGGTCCAAGCTGCCCTGAAGCATGGGAACAGAATGCAACAAGAGACTTA
CATTACTGAGCTACTTGAATATCTGCTCGAGTTTTCTAAAGTCCAATATG
CGCATTTCATCGTCCTTCGCCTTCTCGACGTCACCTCCACCATCCCCTCC
GAACGCAAGCGGGTCCTGCGCGTCTTTGCCAACAAGGCCCACACGCTCGC
AACCCATGCCGTCGGTGCCAAGGTTTTGGAAGGCATCTTCTCTAACTATC
CGAAGCAAGAAACACAGGCCCTGCGCGCGGAGCTCTACGGGCGAGAGACC
ACCCTCTTGCTGGGCGACCTGACAGGGTCAACCACGACTACCAAAGCCCG
TGACCTGCAAGCGATCCTGGCCGAGTTGCCAGAGCGGAGGGAAAAAATTT
TAAGCAACGTATTAGGGATGCTTCAGAAAATTTTGGTGAAGGACCTAGTG
ACTTTGCCCTTCGTCCAGGAACTGATGTGGGAGTACGTCTGTAATGCCGG
ACCAGTCCTGATAAGGGAATTGGTGCCGACATTAGTGGATTACTTGCTGC
TCTTGACGGGGACGAGACCGGGCTGTAAGGTGTTGGCGGAATGCGCGGCA
TATGGCACACCGAAGGATAGGAAGAAGATGCTCAAAGCATTAAAGGGCTA
TGTAATTCCGACCCTCCTCCACAAGGACGCATATCTCTTCCTCCTCCGCC
TTGCCGATGTGGTGGATGATACAGTGACGTTCAATAAGGTGATCTGGACG
GAGTTGCTGGAAAAGGATGAGAAGGAGGCTGCGATGCTGAGATTCGTTAC
TCATGTCAAGGCGTCCAAGTTGTTGTTGTGTCTTCTAGCCCCGACCAAGA
GGGACACATTTCTGATGAAGGATGAAGTGGAATTGCTAAAGCCCGCATTT
ATTCCCGCGGGAGAGAAAAAAGAGGAGAACGAGGTGATGAAGGGAGTGGG
AGAGGGCGAGGAGGGGGGGAAGAAGACAACAGCAGTAGTAGCAGCCAGAA
AGGTCAGCAAGCCCACCCTCCCCTCTTCCAGCGATACTTCCCCCGTGACG
ATGGTCCCGACCAGTAAAAAAGACGCCGAACGTCGCCGTCAGGAGTTGCT
AGCGCCATTGAAAGACCCTCTGATTAGATTAGGGAGAACGCACGCACACG
AAATGTTGCTCTCGGCGGAGGGTAGTTTTATTTTGTATGAAGTCGCGACT
CGTTGGAGGGACCCGACCTTGCTAGAGGCGATTGCACAGGCCGTAGATGG
AGGGATGCATGTGCCTATGGTAGGTAACAAGGAGGACAAAGAGGATGAAG
GAGGCGCGATGGAGGAGGAGGGGGGGGAAGAGGAGGGAGAGGAGGAGGAG
GACGGGATGGACGAAGATAAGGACGAGGAGGAGATGGCGAAGGGTAAGAA
TGAGAACGGAAAATCCGCGCCAACAAAATATAAAGAGGTTGAGAATGAGA
ATGCTGGCCCTCCATATGAGCATCGGATTGCATACAAGACAATCAAACGC
CTGATTCTTTTCGAACTCGGCCCCAAGCCGGTCGACGAAGCCCAAGCAGC
AGAAAAAACAACAGCGATTGCCCCGCCTGCGCCTCTGTTTTGCGACGCGC
TCCTTCGCCATGTGACGGGTCGTTGGATGAAGTGGCTGTCTTCGATCCGT
GGTGGATTTTTGGTGGAGGCTTTGGTGAAGGTTCCTGTGGTGGGACCTCA
GGTAATGAAAGAGCTAGCCCCACACGAAGCGGAGTTAAAAGAGTTGGCAA
TCACATTCAAGGGCGCGGCGGCGGTGCGTGATATCATGGTGAGTGGGGCG
AAGACACCGCCGAAAGAGACGGGGGCTTGGCCCGCTCAAGGAGTAGCAGG
AGGAGGATCGGGAGGAGGGAAGGCGGCAGTTGGCGGGGCGGGGTCCGGGA
GGAAAAGCAAAGGGGGGAAAGGCAAGAAGTAG

Coding sequence (CDS) from alignment at scaffold_25:216356..218587-

>mRNA_8122 ID=mRNA_8122|Name=jgi.p|Nanoce1779_2|532628|organism=Nannochloropsis oceanica|type=CDS|length=4140bp|location=Sequence derived from alignment at scaffold_25:216356..218587- (Nannochloropsis oceanica)
AGGTTGAGAATGAGAATGCTGGCCCTCCATATGAGCATCGGATTGCATAC
AAGACAATCAAACGCCTGATTCTTTTCGAACTCGGCCCCAAGCCGGTCGA
CGAAGCCCAAGCAGCAGAAAAAACAACAGCGATTGCCCCGCCTGCGCCTC
TGTTTTGCGACGCGCTCCTTCGCCATGTGACGGGTCGTTGGATGAAGTGG
CTGTCTTCGATCCGTGGTGGATTTTTGGTGGAGGCTTTGGTGAAGGTTCC
TGTGGTGGGACCTCAGGTAATGAAAGAGCTAGCCCCACACGAAGCGGAGT
TAAAAGAGTTGGCAATCACATTCAAGGGCGCGGCGGCGGTGCGTGATATC
ATGGTGAGTGGGGCGAAGACACCGCCGAAAGAGACGGGGGCTTGGCCCGC
TCAAGGAGTAGCAGGAGGAGGATCGGGAGGAGGGAAGGCGGCAGTTGGCG
GGGCGGGGTCCGGGAGGAAAAGCAAAGGGGGGAAAGGCAAGAAGTAGATG
CAGCAAGGACCGCACAAGCGCCCCTACTCGGCCGGCGGCGGGAGCAGCGG
CGGGGACAAGCCTTACCACAGCAATATCGACGACGTGGGTTGCCCTGCCA
ATAAGAAGCGGCACGTCAAGTACGAACGGGCCAAGACCAAGCCTGCTTTT
GACCTGGTTGCACGCGCCAAAGCCATTTGGGCCATTTTCCGCTCCAAGCG
GCTAGACAAAAACGAGCGAGAGAAGCTGTCGGAGGAGCTCTACTCCCTGA
TCAAGGGCAAGCTCCACCAGATTGCCGTCAAGCATGACGCTGCCCGCGTG
GTCCAAGCTGCCCTGAAGCATGGGAACAGAATGCAACAAGAGACTTACAT
TACTGAGCTACTTGAATATCTGCTCGAGTTTTCTAAAGTCCAATATGCGC
ATTTCATCGTCCTTCGCCTTCTCGACGTCACCTCCACCATCCCCTCCGAA
CGCAAGCGGGTCCTGCGCGTCTTTGCCAACAAGGCCCACACGCTCGCAAC
CCATGCCGTCGGTGCCAAGGTTTTGGAAGGCATCTTCTCTAACTATCCGA
AGCAAGAAACACAGGCCCTGCGCGCGGAGCTCTACGGGCGAGAGACCACC
CTCTTGCTGGGCGACCTGACAGGGTCAACCACGACTACCAAAGCCCGTGA
CCTGCAAGCGATCCTGGCCGAGTTGCCAGAGCGGAGGGAAAAAATTTTAA
GCAACGTATTAGGGATGCTTCAGAAAATTTTGGTGAAGGACCTAGTGACT
TTGCCCTTCGTCCAGGAACTGATGTGGGAGTACGTCTGTAATGCCGGACC
AGTCCTGATAAGGGAATTGGTGCCGACATTAGTGGATTACTTGCTGCTCT
TGACGGGGACGAGACCGGGCTGTAAGGTGTTGGCGGAATGCGCGGCATAT
GGCACACCGAAGGATAGGAAGAAGATGCTCAAAGCATTAAAGGGCTATGT
AATTCCGACCCTCCTCCACAAGGACGCATATCTCTTCCTCCTCCGCCTTG
CCGATGTGGTGGATGATACAGTGACGTTCAATAAGGTGATCTGGACGGAG
TTGCTGGAAAAGGATGAGAAGGAGGCTGCGATGCTGAGATTCGTTACTCA
TGTCAAGGCGTCCAAGTTGTTGTTGTGTCTTCTAGCCCCGACCAAGAGGG
ACACATTTCTGATGAAGGATGAAGTGGAATTGCTAAAGCCCGCATTTATT
CCCGCGGGAGAGAAAAAAGAGGAGAACGAGGTGATGAAGGGAGTGGGAGA
GGGCGAGGAGGGGGGGAAGAAGACAACAGCAGTAGTAGCAGCCAGAAAGG
TCAGCAAGCCCACCCTCCCCTCTTCCAGCGATACTTCCCCCGTGACGATG
GTCCCGACCAGTAAAAAAGACGCCGAACGTCGCCGTCAGGAGTTGCTAGC
GCCATTGAAAGACCCTCTGATTAGATTAGGGAGAACGCACGCACACGAAA
TGTTGCTCTCGGCGGAGGGTAGTTTTATTTTGTATGAAGTCGCGACTCGT
TGGAGGGACCCGACCTTGCTAGAGGCGATTGCACAGGCCGTAGATGGAGG
GATGCATGTGCCTATGGTAGAGGTTGAGAATGAGAATGCTGGCCCTCCAT
ATGAGCATCGGATTGCATACAAGACAATCAAACGCCTGATTCTTTTCGAA
CTCGGCCCCAAGCCGGTCGACGAAGCCCAAGCAGCAGAAAAAACAACAGC
GATTGCCCCGCCTGCGCCTCTGTTTTGCGACGCGCTCCTTCGCCATGTGA
CGGGTCGTTGGATGAAGTGGCTGTCTTCGATCCGTGGTGGATTTTTGGTG
GAGGCTTTGGTGAAGGTTCCTGTGGTGGGACCTCAGGTAATGAAAGAGCT
AGCCCCACACGAAGCGGAGTTAAAAGAGTTGGCAATCACATTCAAGGGCG
CGGCGGCGGTGCGTGATATCATGGTGAGTGGGGCGAAGACACCGCCGAAA
GAGACGGGGGCTTGGCCCGCTCAAGGAGTAGCAGGAGGAGGATCGGGAGG
AGGGAAGGCGGCAGTTGGCGGGGCGGGGTCCGGGAGGAAAAGCAAAGGGG
GGAAAGGCAAGAAGTAGATGCAGCAAGGACCGCACAAGCGCCCCTACTCG
GCCGGCGGCGGGAGCAGCGGCGGGGACAAGCCTTACCACAGCAATATCGA
CGACGTGGGTTGCCCTGCCAATAAGAAGCGGCACGTCAAGTACGAACGGG
CCAAGACCAAGCCTGCTTTTGACCTGGTTGCACGCGCCAAAGCCATTTGG
GCCATTTTCCGCTCCAAGCGGCTAGACAAAAACGAGCGAGAGAAGCTGTC
GGAGGAGCTCTACTCCCTGATCAAGGGCAAGCTCCACCAGATTGCCGTCA
AGCATGACGCTGCCCGCGTGGTCCAAGCTGCCCTGAAGCATGGGAACAGA
ATGCAACAAGAGACTTACATTACTGAGCTACTTGAATATCTGCTCGAGTT
TTCTAAAGTCCAATATGCGCATTTCATCGTCCTTCGCCTTCTCGACGTCA
CCTCCACCATCCCCTCCGAACGCAAGCGGGTCCTGCGCGTCTTTGCCAAC
AAGGCCCACACGCTCGCAACCCATGCCGTCGGTGCCAAGGTTTTGGAAGG
CATCTTCTCTAACTATCCGAAGCAAGAAACACAGGCCCTGCGCGCGGAGC
TCTACGGGCGAGAGACCACCCTCTTGCTGGGCGACCTGACAGGGTCAACC
ACGACTACCAAAGCCCGTGACCTGCAAGCGATCCTGGCCGAGTTGCCAGA
GCGGAGGGAAAAAATTTTAAGCAACGTATTAGGGATGCTTCAGAAAATTT
TGGTGAAGGACCTAGTGACTTTGCCCTTCGTCCAGGAACTGATGTGGGAG
TACGTCTGTAATGCCGGACCAGTCCTGATAAGGGAATTGGTGCCGACATT
AGTGGATTACTTGCTGCTCTTGACGGGGACGAGACCGGGCTGTAAGGTGT
TGGCGGAATGCGCGGCATATGGCACACCGAAGGATAGGAAGAAGATGCTC
AAAGCATTAAAGGGCTATGTAATTCCGACCCTCCTCCACAAGGACGCATA
TCTCTTCCTCCTCCGCCTTGCCGATGTGGTGGATGATACAGTGACGTTCA
ATAAGGTGATCTGGACGGAGTTGCTGGAAAAGGATGAGAAGGAGGCTGCG
ATGCTGAGATTCGTTACTCATGTCAAGGCGTCCAAGTTGTTGTTGTGTCT
TCTAGCCCCGACCAAGAGGGACACATTTCTGATGAAGGATGAAGTGGAAT
TGCTAAAGCCCGCATTTATTCCCGCGGGAGAGAAAAAAGAGGAGAACGAG
GTGATGAAGGGAGTGGGAGAGGGCGAGGAGGGGGGGAAGAAGACAACAGC
AGTAGTAGCAGCCAGAAAGGTCAGCAAGCCCACCCTCCCCTCTTCCAGCG
ATACTTCCCCCGTGACGATGGTCCCGACCAGTAAAAAAGACGCCGAACGT
CGCCGTCAGGAGTTGCTAGCGCCATTGAAAGACCCTCTGATTAGATTAGG
GAGAACGCACGCACACGAAATGTTGCTCTCGGCGGAGGGTAGTTTTATTT
TGTATGAAGTCGCGACTCGTTGGAGGGACCCGACCTTGCTAGAGGCGATT
GCACAGGCCGTAGATGGAGGGATGCATGTGCCTATGGTAG

Synonyms

Publications