jgi.p|Nanoce1779_2|602564, mRNA_8121 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|602564
Unique NamemRNA_8121
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1763
Alignment locationscaffold_25:214368..216130 -

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Properties
Property NameValue
TranscriptId602650
TrackFilteredModels2
ProteinId602564
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_25supercontigscaffold_25:214368..216130 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|602564gene_8121Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|602564mRNA_8121-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8121CDS_8121Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8121 ID=mRNA_8121|Name=jgi.p|Nanoce1779_2|602564|organism=Nannochloropsis oceanica|type=mRNA|length=1763bp
AACAGACGGGTTGCACCCCAATCCACTGCCTGGCCGGGCCAATCGCTACC
GCCAGTGCAGGGGGAGGCTTGCGAGCACTATCCCTTCTCCTTATTGCCCC
TTGAAGTCTTCAGAGGCAGAGGCATGCGACGAAGAGGAATAATACCACTA
GAGCCTACCAAGGCCGTGGCGGCCAAGCATGTGCTCGGTTTACTCATGCT
AAAAGTGCTGCTGCAGCTCTCCACGCCAGCAACTGCCTTCCAAACCCCCG
CCCCGTGGCGAGTAAGACATGCCCCTCTGCGCTCCGTAACGATGGCCACG
CCGAACTCCGCCTCTCAGCAAAAGCATGACAACGGCAACGAGGCCATCCT
CACAATAGTAATCGAGCGGGCTGCCTCGCACACCATCTTGCCTGGCGCCT
TGGCCACCCACGGACGGCTCCTTAAAAGCAGCAACTCCCAGCCCGTAATT
TTTATCCCGCCGAACGAGGAAATCTCCTTCAACTTGGTAGCGGGCCGATG
TGCCGCGACTCAAGATCCCGTCCTAGCCTTTGTCGGACCCTCTGCTACCA
CCAATAAGCCTGGAACCGAATTGCGCGTGCCCGCCGGAGCGGTGCTCCCT
CGGCCAGCATCATTAAGTTTGGAAGAATGTGCCTTGTTGCCTTACCATGC
TGTGTCTTTGCTTCCACCACTGATGCGCGCAGGGATCCACGGAGGGGAGG
GATCTTCAGGCCCAGCCTCGTCAAAGGTTTGCATTGTCACCGGCTGTGGT
CCTGCTGCGATATTTGCCGTTCAAGTGCTGCGTGCGTGGGGTTGCAGAGT
AGTGGGTGTGTCACGACGAAATCCCGAGGTCTTGACAATGGCAGGGGCGG
AAGAGGTGGTGGACTGCCGCACCACTTCCTTCTCCGAGCACGTTCCCCAT
TTCGCAGCCGTTATCGATACGGTCGGCACAGACACGGAGGCTCTCGCGGC
CAACTTACTCAAATTCAAAGATGCTGCTTACGTATCGACCATGCCCTCAG
CCACGCGTCGAATGCAGGCTCAAGGCCTCTTCCAAGCTGCCTCCACGTTC
GCATCCGTCTTCTGGGGGAAACCCGATCTAGCCCCAACTAACGTACACTG
GCTCCCGGAAAAGTTGGGATTAGAAGTAATTTCTTATGTTCTGAACCTGG
CGGAAGCGAGGCATTTAACAATGCCTCTGACCCCTCCCACGCTTGATGAC
TACATGGATGGAGTCGTGTGGGCAAGAGATTCGGAGACCCAAGCAAGGTT
TGGGTTTCCGGCACCTGTTGCCGAGGAGGGGCTGACGGATGCGTTGATTT
CAAGTTTCAAAAAGAGAATGAGGGAGGAGTAGAATAGGAGTAGCTGTGAG
GAGTAGTAGTAGTAATTGCAGCTGTAGTGGTAGTCGTAGCCATTATATCT
TTTGCTTATCGTTGTGAGGGAGAAAAGGAATGTGTTATGTGTGAGAGAGG
GACGGAGAGAAGAAAATTACCAGTGCTTTATCTACTTTGATCCAGCCGCC
TTGATGTGTGGCTGGATTTCATTTAAATCAAAGTCGCGGCAGCCCGCAGC
AGCAATAGCAGAAGCACCCTTTGTAATTCGTCACTCTCAGCCAATTACAT
CCAGCGGCAACAGCAGCAGCAGTAAGTGAATCATCATCAACAACAATAAC
AATAACATGATACGATAAACAGAGATAAAAATGAAGAGAATGTGTTGGAA
ATAAAAGCGGCAAGGCAAAAAAGGGGTAAGCAGCGAAAAGAAGATGATGA
TTTCGTCTTCTTC
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protein sequence of jgi.p|Nanoce1779_2|602564

>mRNA_8121-protein ID=mRNA_8121-protein|Name=jgi.p|Nanoce1779_2|602564|organism=Nannochloropsis oceanica|type=polypeptide|length=403bp
MRRRGIIPLEPTKAVAAKHVLGLLMLKVLLQLSTPATAFQTPAPWRVRHA
PLRSVTMATPNSASQQKHDNGNEAILTIVIERAASHTILPGALATHGRLL
KSSNSQPVIFIPPNEEISFNLVAGRCAATQDPVLAFVGPSATTNKPGTEL
RVPAGAVLPRPASLSLEECALLPYHAVSLLPPLMRAGIHGGEGSSGPASS
KVCIVTGCGPAAIFAVQVLRAWGCRVVGVSRRNPEVLTMAGAEEVVDCRT
TSFSEHVPHFAAVIDTVGTDTEALAANLLKFKDAAYVSTMPSATRRMQAQ
GLFQAASTFASVFWGKPDLAPTNVHWLPEKLGLEVISYVLNLAEARHLTM
PLTPPTLDDYMDGVVWARDSETQARFGFPAPVAEEGLTDALISSFKKRMR
EE*
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mRNA from alignment at scaffold_25:214368..216130-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8121 ID=mRNA_8121|Name=jgi.p|Nanoce1779_2|602564|organism=Nannochloropsis oceanica|type=mRNA|length=1763bp|location=Sequence derived from alignment at scaffold_25:214368..216130- (Nannochloropsis oceanica)
AACAGACGGGTTGCACCCCAATCCACTGCCTGGCCGGGCCAATCGCTACC
GCCAGTGCAGGGGGAGGCTTGCGAGCACTATCCCTTCTCCTTATTGCCCC
TTGAAGTCTTCAGAGGCAGAGGCATGCGACGAAGAGGAATAATACCACTA
GAGCCTACCAAGGCCGTGGCGGCCAAGCATGTGCTCGGTTTACTCATGCT
AAAAGTGCTGCTGCAGCTCTCCACGCCAGCAACTGCCTTCCAAACCCCCG
CCCCGTGGCGAGTAAGACATGCCCCTCTGCGCTCCGTAACGATGGCCACG
CCGAACTCCGCCTCTCAGCAAAAGCATGACAACGGCAACGAGGCCATCCT
CACAATAGTAATCGAGCGGGCTGCCTCGCACACCATCTTGCCTGGCGCCT
TGGCCACCCACGGACGGCTCCTTAAAAGCAGCAACTCCCAGCCCGTAATT
TTTATCCCGCCGAACGAGGAAATCTCCTTCAACTTGGTAGCGGGCCGATG
TGCCGCGACTCAAGATCCCGTCCTAGCCTTTGTCGGACCCTCTGCTACCA
CCAATAAGCCTGGAACCGAATTGCGCGTGCCCGCCGGAGCGGTGCTCCCT
CGGCCAGCATCATTAAGTTTGGAAGAATGTGCCTTGTTGCCTTACCATGC
TGTGTCTTTGCTTCCACCACTGATGCGCGCAGGGATCCACGGAGGGGAGG
GATCTTCAGGCCCAGCCTCGTCAAAGGTTTGCATTGTCACCGGCTGTGGT
CCTGCTGCGATATTTGCCGTTCAAGTGCTGCGTGCGTGGGGTTGCAGAGT
AGTGGGTGTGTCACGACGAAATCCCGAGGTCTTGACAATGGCAGGGGCGG
AAGAGGTGGTGGACTGCCGCACCACTTCCTTCTCCGAGCACGTTCCCCAT
TTCGCAGCCGTTATCGATACGGTCGGCACAGACACGGAGGCTCTCGCGGC
CAACTTACTCAAATTCAAAGATGCTGCTTACGTATCGACCATGCCCTCAG
CCACGCGTCGAATGCAGGCTCAAGGCCTCTTCCAAGCTGCCTCCACGTTC
GCATCCGTCTTCTGGGGGAAACCCGATCTAGCCCCAACTAACGTACACTG
GCTCCCGGAAAAGTTGGGATTAGAAGTAATTTCTTATGTTCTGAACCTGG
CGGAAGCGAGGCATTTAACAATGCCTCTGACCCCTCCCACGCTTGATGAC
TACATGGATGGAGTCGTGTGGGCAAGAGATTCGGAGACCCAAGCAAGGTT
TGGGTTTCCGGCACCTGTTGCCGAGGAGGGGCTGACGGATGCGTTGATTT
CAAGTTTCAAAAAGAGAATGAGGGAGGAGTAGAATAGGAGTAGCTGTGAG
GAGTAGTAGTAGTAATTGCAGCTGTAGTGGTAGTCGTAGCCATTATATCT
TTTGCTTATCGTTGTGAGGGAGAAAAGGAATGTGTTATGTGTGAGAGAGG
GACGGAGAGAAGAAAATTACCAGTGCTTTATCTACTTTGATCCAGCCGCC
TTGATGTGTGGCTGGATTTCATTTAAATCAAAGTCGCGGCAGCCCGCAGC
AGCAATAGCAGAAGCACCCTTTGTAATTCGTCACTCTCAGCCAATTACAT
CCAGCGGCAACAGCAGCAGCAGTAAGTGAATCATCATCAACAACAATAAC
AATAACATGATACGATAAACAGAGATAAAAATGAAGAGAATGTGTTGGAA
ATAAAAGCGGCAAGGCAAAAAAGGGGTAAGCAGCGAAAAGAAGATGATGA
TTTCGTCTTCTTC
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Coding sequence (CDS) from alignment at scaffold_25:214368..216130-

>mRNA_8121 ID=mRNA_8121|Name=jgi.p|Nanoce1779_2|602564|organism=Nannochloropsis oceanica|type=CDS|length=1209bp|location=Sequence derived from alignment at scaffold_25:214368..216130- (Nannochloropsis oceanica)
ATGCGACGAAGAGGAATAATACCACTAGAGCCTACCAAGGCCGTGGCGGC
CAAGCATGTGCTCGGTTTACTCATGCTAAAAGTGCTGCTGCAGCTCTCCA
CGCCAGCAACTGCCTTCCAAACCCCCGCCCCGTGGCGAGTAAGACATGCC
CCTCTGCGCTCCGTAACGATGGCCACGCCGAACTCCGCCTCTCAGCAAAA
GCATGACAACGGCAACGAGGCCATCCTCACAATAGTAATCGAGCGGGCTG
CCTCGCACACCATCTTGCCTGGCGCCTTGGCCACCCACGGACGGCTCCTT
AAAAGCAGCAACTCCCAGCCCGTAATTTTTATCCCGCCGAACGAGGAAAT
CTCCTTCAACTTGGTAGCGGGCCGATGTGCCGCGACTCAAGATCCCGTCC
TAGCCTTTGTCGGACCCTCTGCTACCACCAATAAGCCTGGAACCGAATTG
CGCGTGCCCGCCGGAGCGGTGCTCCCTCGGCCAGCATCATTAAGTTTGGA
AGAATGTGCCTTGTTGCCTTACCATGCTGTGTCTTTGCTTCCACCACTGA
TGCGCGCAGGGATCCACGGAGGGGAGGGATCTTCAGGCCCAGCCTCGTCA
AAGGTTTGCATTGTCACCGGCTGTGGTCCTGCTGCGATATTTGCCGTTCA
AGTGCTGCGTGCGTGGGGTTGCAGAGTAGTGGGTGTGTCACGACGAAATC
CCGAGGTCTTGACAATGGCAGGGGCGGAAGAGGTGGTGGACTGCCGCACC
ACTTCCTTCTCCGAGCACGTTCCCCATTTCGCAGCCGTTATCGATACGGT
CGGCACAGACACGGAGGCTCTCGCGGCCAACTTACTCAAATTCAAAGATG
CTGCTTACGTATCGACCATGCCCTCAGCCACGCGTCGAATGCAGGCTCAA
GGCCTCTTCCAAGCTGCCTCCACGTTCGCATCCGTCTTCTGGGGGAAACC
CGATCTAGCCCCAACTAACGTACACTGGCTCCCGGAAAAGTTGGGATTAG
AAGTAATTTCTTATGTTCTGAACCTGGCGGAAGCGAGGCATTTAACAATG
CCTCTGACCCCTCCCACGCTTGATGACTACATGGATGGAGTCGTGTGGGC
AAGAGATTCGGAGACCCAAGCAAGGTTTGGGTTTCCGGCACCTGTTGCCG
AGGAGGGGCTGACGGATGCGTTGATTTCAAGTTTCAAAAAGAGAATGAGG
GAGGAGTAG
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Synonyms
Publications