jgi.p|Nanoce1779_2|602561, mRNA_8120 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|602561
Unique Name	mRNA_8120
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1611
Alignment location	scaffold_25:212496..214386 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	602647
Track	FilteredModels2
ProteinId	602561

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_25	supercontig	scaffold_25:212496..214386 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|602561	gene_8120	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|602561	mRNA_8120-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8120	CDS_8120	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_25:212496..214386+
coding sequence from alignment at scaffold_25:212496..214386+

mRNA sequence

>mRNA_8120 ID=mRNA_8120|Name=jgi.p|Nanoce1779_2|602561|organism=Nannochloropsis oceanica|type=mRNA|length=1611bp
AGTGATAACAACGCCGATCATCCAGTGACCAAGGCCTTTTCCATGGCGGC
ATGATCCTCCGCGCCTTCTCCCTTCCTGCAATCCTCCTCCTCGTCTTCCT
CTGCAACTGCCTTCTATTAATGGTCCTCGCCTCAGCAGCCTCAGCAGCCA
CTACAACCATTTTCATCGTGAACAAAATCCTCCTTGGCCCTGTGTGCCCT
CGCTTATTCCTACAGCGCTTGTACTCGTGTCACCTTACCGACAGATTCCG
CGTCGCCAGTATGTCTACCTCCTCCACCTCTCCCTCACGACCCAAAGTCA
TTGTCATCACAGGCCCTACGGCCGTGGGCAAATCCAACCTAGCTTTGACA
CTTTGTCGAAATGCCTCCCAGTCTGTGACAGGGGAGATAATTACGGTGGA
CTCCGTTCAAGTCTATCGAGCGTTGGATATTGGGTCGAACAAACCCTCAA
AGGAAGAACAGGCTGAGGTCCCCCACCACTTACTCGATGTCCTGGAGCCC
AATGCCCCCGAGGCCTTCACCGCGGGTGATTTCGTCCGGAAAGCAGAGGA
AGCGATTGATGACGCTTTGGCACGCGGAAGAATACCGGTGGTGGTAGGCG
GGACGTCTATGTATACGCAGTGGCTGGTGCAGGGACGGCCGGACGCCCCC
AAGTCGGACCCTGAGGTGGAGTTAAAGGCAAGAGGGATACTGGCACCTTT
TCAGAACAAAAATGATTGGGAGGGCGGCCTGGCTCTCTTAGCCGCCCGGA
ACCCCGATCGCGCCAGCAAGCTACATGCTAACGATTGGTACCGCCTTGAA
CGTGCCCTAGAGGTCACTTTCATGACTTCCCCCCCTTCCTCTTTCTCCTC
CTCCTCTTCCTGCTCCTCTTTTAATGGCGTCCGCTCCCAATCGCTAACCA
GCAAATACGACTTTCGCTGTTTTTTCCTCATAGCCCCGCGGGAAGAACTC
TGCCACGTCATAGATCAACGCTGTCTTCAAATGGTCGAAAAAGGGCTCCT
GGAAGAAACTGCCTCTCTGTTATCTGCAGGCGTCCTAGACCCTTCATCAC
CCCCAGGGCGCGCCATTGGCTATAGACAAGCAATTGAGTATTTGAGCAAG
GAAGGAGTGAAGAATAAGGAGGAGGAAGCTGTAGCATTGAAGCTCTTCCT
CAAGGATTTTGCCACGGCCACCCGTCGCTACGCCAAGCAACAAATGGTGT
GGTATCGAGCGCAGCCTGAGTTCATCTGGTTGAGATGGAACCTGCTCGAC
CTCGCTCCCGCTCTCGCCTCCCTTCATGCCTCCTTTAAGGAGGACGAGAT
GAGTCATTTCGAGAGGAGGAGGGGGGGCGCGCAAGAAGCATTGAGGAAGG
AGAACATGATGGAAGGAAAGAGAATGAAGGCGTACACGTCAAAGATATTG
GAAGGACTGACAGGGGACAAGTTGGAAACGTTGGTTAGGAGAGCGACAGA
TTGCAGAGCGCAGGTGCTGGCAGCAGCAGCAGCTGCAGATAAAAGATAGG
GACAACGCGTCCATAGAGAGAGGAACAAGGGAGACCTAGAAAGGAGTTTG
GAAAAAAATGTGTACAGTAGGCCTTAACAAAGAGAGGCTAAAGAAGAAGA
CGAAATCATCA

protein sequence of jgi.p|Nanoce1779_2|602561

>mRNA_8120-protein ID=mRNA_8120-protein|Name=jgi.p|Nanoce1779_2|602561|organism=Nannochloropsis oceanica|type=polypeptide|length=483bp
MILRAFSLPAILLLVFLCNCLLLMVLASAASAATTTIFIVNKILLGPVCP
RLFLQRLYSCHLTDRFRVASMSTSSTSPSRPKVIVITGPTAVGKSNLALT
LCRNASQSVTGEIITVDSVQVYRALDIGSNKPSKEEQAEVPHHLLDVLEP
NAPEAFTAGDFVRKAEEAIDDALARGRIPVVVGGTSMYTQWLVQGRPDAP
KSDPEVELKARGILAPFQNKNDWEGGLALLAARNPDRASKLHANDWYRLE
RALEVTFMTSPPSSFSSSSSCSSFNGVRSQSLTSKYDFRCFFLIAPREEL
CHVIDQRCLQMVEKGLLEETASLLSAGVLDPSSPPGRAIGYRQAIEYLSK
EGVKNKEEEAVALKLFLKDFATATRRYAKQQMVWYRAQPEFIWLRWNLLD
LAPALASLHASFKEDEMSHFERRRGGAQEALRKENMMEGKRMKAYTSKIL
EGLTGDKLETLVRRATDCRAQVLAAAAAADKR*

mRNA from alignment at scaffold_25:212496..214386+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8120 ID=mRNA_8120|Name=jgi.p|Nanoce1779_2|602561|organism=Nannochloropsis oceanica|type=mRNA|length=1891bp|location=Sequence derived from alignment at scaffold_25:212496..214386+ (Nannochloropsis oceanica)
AGTGATAACAACGCCGATCATCCAGTGACCAAGGCCTTTTCCATGGCGGC
ATGATCCTCCGCGCCTTCTCCCTTCCTGCAATCCTCCTCCTCGTCTTCCT
CTGCAACTGCCTTCTATTAATGGTCCTCGCCTCAGCAGCCTCAGCAGCCA
CTACAACCATTTTCATCGTGAACAAAATCCTCCTTGGCCCTGTGTGCCCT
CGCTTATTCCTACAGCGCTTGTACTCGTGTCACCTTACCGACAGATTCCG
CGTCGCCAGTATGTCTACCTCCTCCACCTCTCCCTCACGACCCAAAGTCA
TTGTCATCACAGGCCCTACGGCCGTGGGCAAATCCAACCTAGCTTTGACA
CTTTGTCGAAATGCCTCCCAGTCTGTGACAGGGGAGATAATTACGGTGGA
CTCCGTTCAAGTCTATCGAGCGTTGGATATTGGGTCGAACAAACCCTCAA
AGGAAGAACAGGCTGAGGTCCCCCACCACTTACTCGATGTCCTGGAGCCC
AATGCCCCCGAGGCCTTCACCGCGGGTGATTTCGTCCGGAAAGCAGAGGA
AGCGATTGATGACGCTTTGGCACGCGGAAGAATACCGGTGGTGGTAGGCG
GGACGTCTATGTATACGCAGTGGCTGGTGCAGGGACGGCCGGACGCCCCC
AAGTCGGACCCTGAGGTGGAGTTAAAGGCAAGAGGGATACTGGCACCTTT
TCAGAACAAAAATGATTGGGAGGTTAGTGATGTGATATGTGGGGGGAAGC
ATAGGCTGTTGAGTGCCTTTTCTGAAGATACAGGAAGTGGCCTACAAATT
ATTCCTTTTCCCCTTCTCTCCCCCCCCCTTCCCACTTTTATCAACACACA
GGGCGGCCTGGCTCTCTTAGCCGCCCGGAACCCCGATCGCGCCAGCAAGC
TACATGCTAACGATTGGTACCGCCTTGAACGTGCCCTAGAGGTCACTTTC
ATGACTTCCCCCCCTTCCTCTTTCTCCTCCTCCTCTTCCTGCTCCTCTTT
TAATGGCGTCCGCTCCCAATCGCTAACCAGCAAATACGACTTTCGCTGTT
TTTTCCTCATAGCCCCGCGGGAAGAACTCTGCCACGTCATAGATCAACGC
TGTCTTCAAATGGTCGAAAAAGGGCTCCTGGAAGAAACTGCCTCTCTGTT
ATCTGCAGGCGTCCTAGACCCTTCATCACCCCCAGGGCGCGCCATTGGCT
ATAGACAAGCAATTGAGTATTTGAGCAAGGAAGGAGTGAAGAATAAGGAG
GAGGAAGCTGTAGCATTGAAGGTAAGTAGGCAGGAAAGGAGGTTAGAGAG
GTTTCTTTTCCAACTACCGGCCTGAAATTTTTTCCATCCCTGACTGAATT
TTTATTTCATCCCCATATATCGTTTTACCCCTTTCCTCCCTTCCTCCCTC
CCACCCTCCCCCCCTCCCTCAGCTCTTCCTCAAGGATTTTGCCACGGCCA
CCCGTCGCTACGCCAAGCAACAAATGGTGTGGTATCGAGCGCAGCCTGAG
TTCATCTGGTTGAGATGGAACCTGCTCGACCTCGCTCCCGCTCTCGCCTC
CCTTCATGCCTCCTTTAAGGAGGACGAGATGAGTCATTTCGAGAGGAGGA
GGGGGGGCGCGCAAGAAGCATTGAGGAAGGAGAACATGATGGAAGGAAAG
AGAATGAAGGCGTACACGTCAAAGATATTGGAAGGACTGACAGGGGACAA
GTTGGAAACGTTGGTTAGGAGAGCGACAGATTGCAGAGCGCAGGTGCTGG
CAGCAGCAGCAGCTGCAGATAAAAGATAGGGACAACGCGTCCATAGAGAG
AGGAACAAGGGAGACCTAGAAAGGAGTTTGGAAAAAAATGTGTACAGTAG
GCCTTAACAAAGAGAGGCTAAAGAAGAAGACGAAATCATCA

Coding sequence (CDS) from alignment at scaffold_25:212496..214386+

>mRNA_8120 ID=mRNA_8120|Name=jgi.p|Nanoce1779_2|602561|organism=Nannochloropsis oceanica|type=CDS|length=4347bp|location=Sequence derived from alignment at scaffold_25:212496..214386+ (Nannochloropsis oceanica)
ATGATCCTCCGCGCCTTCTCCCTTCCTGCAATCCTCCTCCTCGTCTTCCT
CTGCAACTGCCTTCTATTAATGGTCCTCGCCTCAGCAGCCTCAGCAGCCA
CTACAACCATTTTCATCGTGAACAAAATCCTCCTTGGCCCTGTGTGCCCT
CGCTTATTCCTACAGCGCTTGTACTCGTGTCACCTTACCGACAGATTCCG
CGTCGCCAGTATGTCTACCTCCTCCACCTCTCCCTCACGACCCAAAGTCA
TTGTCATCACAGGCCCTACGGCCGTGGGCAAATCCAACCTAGCTTTGACA
CTTTGTCGAAATGCCTCCCAGTCTGTGACAGGGGAGATAATTACGGTGGA
CTCCGTTCAAGTCTATCGAGCGTTGGATATTGGGTCGAACAAACCCTCAA
AGGAAGAACAGGCTGAGGTCCCCCACCACTTACTCGATGTCCTGGAGCCC
AATGCCCCCGAGGCCTTCACCGCGGGTGATTTCGTCCGGAAAGCAGAGGA
AGCGATTGATGACGCTTTGGCACGCGGAAGAATACCGGTGGTGGTAGGCG
GGACGTCTATGTATACGCAGTGGCTGGTGCAGGGACGGCCGGACGCCCCC
AAGTCGGACCCTGAGGTGGAGTTAAAGGCAAGAGGGATACTGGCACCTTT
TCAGAACAAAAATGATTGGGAGGGCGGCCTGGCTCTCTTAGCCGCCCGGA
ACCCCGATCGCGCCAGCAAGCTACATGCTAACGATTGGTACCGCCTTGAA
CGTGCCCTAGAGGTCACTTTCATGACTTCCCCCCCTTCCTCTTTCTCCTC
CTCCTCTTCCTGCTCCTCTTTTAATGGCGTCCGCTCCCAATCGCTAACCA
GCAAATACGACTTTCGCTGTTTTTTCCTCATAGCCCCGCGGGAAGAACTC
TGCCACGTCATAGATCAACGCTGTCTTCAAATGGTCGAAAAAGGGCTCCT
GGAAGAAACTGCCTCTCTGTTATCTGCAGGCGTCCTAGACCCTTCATCAC
CCCCAGGGCGCGCCATTGGCTATAGACAAGCAATTGAGTATTTGAGCAAG
GAAGGAGTGAAGAATAAGGAGGAGGAAGCTGTAGCATTGAAGCTCTTCCT
CAAGGATTTTGCCACGGCCACCCGTCGCTACGCCAAGCAACAAATGGTGT
GGTATCGAGCGCAGCCTGAGTTCATCTGGTTGAGATGGAACCTGCTCGAC
CTCGCTCCCGCTCTCGCCTCCCTTCATGCCTCCTTTAAGGAGGACGAGAT
GAGTCATTTCGAGAGGAGGAGGGGGGGCGCGCAAGAAGCATTGAGGAAGG
AGAACATGATGGAAGGAAAGAGAATGAAGGCGTACACGTCAAAGATATTG
GAAGGACTGACAGGGGACAAGTTGGAAACGTTGGTTAGGAGAGCGACAGA
TTGCAGAGCGCAGGTGCTGGCAGCAGCAGCAGCTGCAGATAAAAGATAGA
TGATCCTCCGCGCCTTCTCCCTTCCTGCAATCCTCCTCCTCGTCTTCCTC
TGCAACTGCCTTCTATTAATGGTCCTCGCCTCAGCAGCCTCAGCAGCCAC
TACAACCATTTTCATCGTGAACAAAATCCTCCTTGGCCCTGTGTGCCCTC
GCTTATTCCTACAGCGCTTGTACTCGTGTCACCTTACCGACAGATTCCGC
GTCGCCAGTATGTCTACCTCCTCCACCTCTCCCTCACGACCCAAAGTCAT
TGTCATCACAGGCCCTACGGCCGTGGGCAAATCCAACCTAGCTTTGACAC
TTTGTCGAAATGCCTCCCAGTCTGTGACAGGGGAGATAATTACGGTGGAC
TCCGTTCAAGTCTATCGAGCGTTGGATATTGGGTCGAACAAACCCTCAAA
GGAAGAACAGGCTGAGGTCCCCCACCACTTACTCGATGTCCTGGAGCCCA
ATGCCCCCGAGGCCTTCACCGCGGGTGATTTCGTCCGGAAAGCAGAGGAA
GCGATTGATGACGCTTTGGCACGCGGAAGAATACCGGTGGTGGTAGGCGG
GACGTCTATGTATACGCAGTGGCTGGTGCAGGGACGGCCGGACGCCCCCA
AGTCGGACCCTGAGGTGGAGTTAAAGGCAAGAGGGATACTGGCACCTTTT
CAGAACAAAAATGATTGGGAGGGCGGCCTGGCTCTCTTAGCCGCCCGGAA
CCCCGATCGCGCCAGCAAGCTACATGCTAACGATTGGTACCGCCTTGAAC
GTGCCCTAGAGGTCACTTTCATGACTTCCCCCCCTTCCTCTTTCTCCTCC
TCCTCTTCCTGCTCCTCTTTTAATGGCGTCCGCTCCCAATCGCTAACCAG
CAAATACGACTTTCGCTGTTTTTTCCTCATAGCCCCGCGGGAAGAACTCT
GCCACGTCATAGATCAACGCTGTCTTCAAATGGTCGAAAAAGGGCTCCTG
GAAGAAACTGCCTCTCTGTTATCTGCAGGCGTCCTAGACCCTTCATCACC
CCCAGGGCGCGCCATTGGCTATAGACAAGCAATTGAGTATTTGAGCAAGG
AAGGAGTGAAGAATAAGGAGGAGGAAGCTGTAGCATTGAAGCTCTTCCTC
AAGGATTTTGCCACGGCCACCCGTCGCTACGCCAAGCAACAAATGGTGTG
GTATCGAGCGCAGCCTGAGTTCATCTGGTTGAGATGGAACCTGCTCGACC
TCGCTCCCGCTCTCGCCTCCCTTCATGCCTCCTTTAAGGAGGACGAGATG
AGTCATTTCGAGAGGAGGAGGGGGGGCGCGCAAGAAGCATTGAGGAAGGA
GAACATGATGGAAGGAAAGAGAATGAAGGCGTACACGTCAAAGATATTGG
AAGGACTGACAGGGGACAAGTTGGAAACGTTGGTTAGGAGAGCGACAGAT
TGCAGAGCGCAGGTGCTGGCAGCAGCAGCAGCTGCAGATAAAAGATAGAT
GATCCTCCGCGCCTTCTCCCTTCCTGCAATCCTCCTCCTCGTCTTCCTCT
GCAACTGCCTTCTATTAATGGTCCTCGCCTCAGCAGCCTCAGCAGCCACT
ACAACCATTTTCATCGTGAACAAAATCCTCCTTGGCCCTGTGTGCCCTCG
CTTATTCCTACAGCGCTTGTACTCGTGTCACCTTACCGACAGATTCCGCG
TCGCCAGTATGTCTACCTCCTCCACCTCTCCCTCACGACCCAAAGTCATT
GTCATCACAGGCCCTACGGCCGTGGGCAAATCCAACCTAGCTTTGACACT
TTGTCGAAATGCCTCCCAGTCTGTGACAGGGGAGATAATTACGGTGGACT
CCGTTCAAGTCTATCGAGCGTTGGATATTGGGTCGAACAAACCCTCAAAG
GAAGAACAGGCTGAGGTCCCCCACCACTTACTCGATGTCCTGGAGCCCAA
TGCCCCCGAGGCCTTCACCGCGGGTGATTTCGTCCGGAAAGCAGAGGAAG
CGATTGATGACGCTTTGGCACGCGGAAGAATACCGGTGGTGGTAGGCGGG
ACGTCTATGTATACGCAGTGGCTGGTGCAGGGACGGCCGGACGCCCCCAA
GTCGGACCCTGAGGTGGAGTTAAAGGCAAGAGGGATACTGGCACCTTTTC
AGAACAAAAATGATTGGGAGGGCGGCCTGGCTCTCTTAGCCGCCCGGAAC
CCCGATCGCGCCAGCAAGCTACATGCTAACGATTGGTACCGCCTTGAACG
TGCCCTAGAGGTCACTTTCATGACTTCCCCCCCTTCCTCTTTCTCCTCCT
CCTCTTCCTGCTCCTCTTTTAATGGCGTCCGCTCCCAATCGCTAACCAGC
AAATACGACTTTCGCTGTTTTTTCCTCATAGCCCCGCGGGAAGAACTCTG
CCACGTCATAGATCAACGCTGTCTTCAAATGGTCGAAAAAGGGCTCCTGG
AAGAAACTGCCTCTCTGTTATCTGCAGGCGTCCTAGACCCTTCATCACCC
CCAGGGCGCGCCATTGGCTATAGACAAGCAATTGAGTATTTGAGCAAGGA
AGGAGTGAAGAATAAGGAGGAGGAAGCTGTAGCATTGAAGCTCTTCCTCA
AGGATTTTGCCACGGCCACCCGTCGCTACGCCAAGCAACAAATGGTGTGG
TATCGAGCGCAGCCTGAGTTCATCTGGTTGAGATGGAACCTGCTCGACCT
CGCTCCCGCTCTCGCCTCCCTTCATGCCTCCTTTAAGGAGGACGAGATGA
GTCATTTCGAGAGGAGGAGGGGGGGCGCGCAAGAAGCATTGAGGAAGGAG
AACATGATGGAAGGAAAGAGAATGAAGGCGTACACGTCAAAGATATTGGA
AGGACTGACAGGGGACAAGTTGGAAACGTTGGTTAGGAGAGCGACAGATT
GCAGAGCGCAGGTGCTGGCAGCAGCAGCAGCTGCAGATAAAAGATAG

Synonyms

Publications