jgi.p|Nanoce1779_2|602557, mRNA_8118 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|602557
Unique NamemRNA_8118
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length989
Alignment locationscaffold_25:203549..204537 -

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Properties
Property NameValue
TranscriptId602643
TrackFilteredModels2
ProteinId602557
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_25supercontigscaffold_25:203549..204537 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|602557gene_8118Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|602557mRNA_8118-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8118CDS_8118Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8118 ID=mRNA_8118|Name=jgi.p|Nanoce1779_2|602557|organism=Nannochloropsis oceanica|type=mRNA|length=989bp
GGGGGACGAGCTAGTTTCGGAATCAGAAGGTCAATTTGATGAGGAAGAGG
AGGCGGAGGAGGAGGAGGAGGAGGAGAGGGAGGAAGAGAAAGAAGAGCAC
CCGCTGGCGCAAATACTGTCACCGCACCTGCAGCAACAGCAAATGCAGCA
CCAGCGGCTGCAGCAGGCGCTCCGCCCACCCCAATACTTCTCTACTCCCT
TTCTCTCCGTCTTAGACGGGCTGATGGCCGGACACGACGGTGTAACCTAC
CATGGAGTGCCCGTGAATGAATCAGGGAGGAGTCTGCCCCTCTATGACCT
TTCTCATTTTGGGATGACTGACGACCTTGTCCTCCGCCTTGTCAATCTTC
CTCCGCACTATACCCAGCTTTACGGAATTGTCAAACAGCACACGCGACCG
ACCACAGTCTCAGGGACTGGCAGCCTTGCTGCTGATACTGCAGCTGCTTC
TGGTCCTCCTCGTCCACCTGCTGGCGGTAGTACTGCTGTTTCTGCTGCGT
TGAGACGTGATATTGAAGATCCTGCCATTTGTCTTATCTGTGGTGAAATC
GTTCCAGCTGGTCCCAATGTCCCCGGCCGAACGAGATTTGGGGCTCCGGG
TGGGTGTACCTTGCATGCGCGGGCGTGTGGGGCGGGGTCAGGGATGATGC
TGCTGGTTAATAAAGGCACGGTGTTATTGTTCAGAGACGACCGCGCGACG
TTCTACCCGAGTCCTTATCTGGACCAGTATGGGGAGGAGGATGTGAATCT
GAGGAGGGGGAGGCCATTGATGCTGAGTGAAGGGAGGTTCGAAGGATTGT
TGAGTCTGTATCGCGAGCATGCAGTAGGGCGGACAGTGGCGAGCCGACGG
TTGAATGCTGAGAGGGTGATTAGGGAAGGGTACTACTAAAGGGAGGGGAG
GGAAAACAGAGAGGAAGGGAGGGAGGGAGGATGAAGGGTTGTGCTATTTT
GAGATCAAAGAGTGTACATAAATAAAACAAAGACGTCAG
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protein sequence of jgi.p|Nanoce1779_2|602557

>mRNA_8118-protein ID=mRNA_8118-protein|Name=jgi.p|Nanoce1779_2|602557|organism=Nannochloropsis oceanica|type=polypeptide|length=249bp
MQHQRLQQALRPPQYFSTPFLSVLDGLMAGHDGVTYHGVPVNESGRSLPL
YDLSHFGMTDDLVLRLVNLPPHYTQLYGIVKQHTRPTTVSGTGSLAADTA
AASGPPRPPAGGSTAVSAALRRDIEDPAICLICGEIVPAGPNVPGRTRFG
APGGCTLHARACGAGSGMMLLVNKGTVLLFRDDRATFYPSPYLDQYGEED
VNLRRGRPLMLSEGRFEGLLSLYREHAVGRTVASRRLNAERVIREGYY*
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mRNA from alignment at scaffold_25:203549..204537-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8118 ID=mRNA_8118|Name=jgi.p|Nanoce1779_2|602557|organism=Nannochloropsis oceanica|type=mRNA|length=989bp|location=Sequence derived from alignment at scaffold_25:203549..204537- (Nannochloropsis oceanica)
GGGGGACGAGCTAGTTTCGGAATCAGAAGGTCAATTTGATGAGGAAGAGG
AGGCGGAGGAGGAGGAGGAGGAGGAGAGGGAGGAAGAGAAAGAAGAGCAC
CCGCTGGCGCAAATACTGTCACCGCACCTGCAGCAACAGCAAATGCAGCA
CCAGCGGCTGCAGCAGGCGCTCCGCCCACCCCAATACTTCTCTACTCCCT
TTCTCTCCGTCTTAGACGGGCTGATGGCCGGACACGACGGTGTAACCTAC
CATGGAGTGCCCGTGAATGAATCAGGGAGGAGTCTGCCCCTCTATGACCT
TTCTCATTTTGGGATGACTGACGACCTTGTCCTCCGCCTTGTCAATCTTC
CTCCGCACTATACCCAGCTTTACGGAATTGTCAAACAGCACACGCGACCG
ACCACAGTCTCAGGGACTGGCAGCCTTGCTGCTGATACTGCAGCTGCTTC
TGGTCCTCCTCGTCCACCTGCTGGCGGTAGTACTGCTGTTTCTGCTGCGT
TGAGACGTGATATTGAAGATCCTGCCATTTGTCTTATCTGTGGTGAAATC
GTTCCAGCTGGTCCCAATGTCCCCGGCCGAACGAGATTTGGGGCTCCGGG
TGGGTGTACCTTGCATGCGCGGGCGTGTGGGGCGGGGTCAGGGATGATGC
TGCTGGTTAATAAAGGCACGGTGTTATTGTTCAGAGACGACCGCGCGACG
TTCTACCCGAGTCCTTATCTGGACCAGTATGGGGAGGAGGATGTGAATCT
GAGGAGGGGGAGGCCATTGATGCTGAGTGAAGGGAGGTTCGAAGGATTGT
TGAGTCTGTATCGCGAGCATGCAGTAGGGCGGACAGTGGCGAGCCGACGG
TTGAATGCTGAGAGGGTGATTAGGGAAGGGTACTACTAAAGGGAGGGGAG
GGAAAACAGAGAGGAAGGGAGGGAGGGAGGATGAAGGGTTGTGCTATTTT
GAGATCAAAGAGTGTACATAAATAAAACAAAGACGTCAG
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Coding sequence (CDS) from alignment at scaffold_25:203549..204537-

>mRNA_8118 ID=mRNA_8118|Name=jgi.p|Nanoce1779_2|602557|organism=Nannochloropsis oceanica|type=CDS|length=747bp|location=Sequence derived from alignment at scaffold_25:203549..204537- (Nannochloropsis oceanica)
ATGCAGCACCAGCGGCTGCAGCAGGCGCTCCGCCCACCCCAATACTTCTC
TACTCCCTTTCTCTCCGTCTTAGACGGGCTGATGGCCGGACACGACGGTG
TAACCTACCATGGAGTGCCCGTGAATGAATCAGGGAGGAGTCTGCCCCTC
TATGACCTTTCTCATTTTGGGATGACTGACGACCTTGTCCTCCGCCTTGT
CAATCTTCCTCCGCACTATACCCAGCTTTACGGAATTGTCAAACAGCACA
CGCGACCGACCACAGTCTCAGGGACTGGCAGCCTTGCTGCTGATACTGCA
GCTGCTTCTGGTCCTCCTCGTCCACCTGCTGGCGGTAGTACTGCTGTTTC
TGCTGCGTTGAGACGTGATATTGAAGATCCTGCCATTTGTCTTATCTGTG
GTGAAATCGTTCCAGCTGGTCCCAATGTCCCCGGCCGAACGAGATTTGGG
GCTCCGGGTGGGTGTACCTTGCATGCGCGGGCGTGTGGGGCGGGGTCAGG
GATGATGCTGCTGGTTAATAAAGGCACGGTGTTATTGTTCAGAGACGACC
GCGCGACGTTCTACCCGAGTCCTTATCTGGACCAGTATGGGGAGGAGGAT
GTGAATCTGAGGAGGGGGAGGCCATTGATGCTGAGTGAAGGGAGGTTCGA
AGGATTGTTGAGTCTGTATCGCGAGCATGCAGTAGGGCGGACAGTGGCGA
GCCGACGGTTGAATGCTGAGAGGGTGATTAGGGAAGGGTACTACTAA
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Synonyms
Publications