jgi.p|Nanoce1779_2|602556, mRNA_8117 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|602556
Unique Name	mRNA_8117
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1811
Alignment location	scaffold_25:201495..203305 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	602642
Track	FilteredModels2
ProteinId	602556

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_25	supercontig	scaffold_25:201495..203305 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|602556	gene_8117	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|602556	mRNA_8117-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8117	CDS_8117	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_25:201495..203305+
coding sequence from alignment at scaffold_25:201495..203305+

mRNA sequence

>mRNA_8117 ID=mRNA_8117|Name=jgi.p|Nanoce1779_2|602556|organism=Nannochloropsis oceanica|type=mRNA|length=1811bp
ACAGGCTAAGAGCTTGGCACCCTGCGTCCTTTTTCCCCGTGCCAATCGTC
ATCCTCATCATTCTGCGTCATCCGTCCTAGCAGCGCCCAAGCTTTCTCCT
CAGTTCTTGCAGCCAAACCCTTAATATCGTGATGCCCAGGAGGGACCCAC
ATACATTTAGTATACCATCATTACAGCCAGGCATCGACGATGTTACCACA
GCAAAGAGGAGCGGCAGACGCACAACATCAATCAGGATGGCTTTTTCGGC
ATCGAAGCTCGTGATTGTCCTTCTCATCTTCGTAGCCCAAGCAAAAACTG
GGGCGACCGCCGCGAGACTGACGACGACGACAAGAAGTTCCGCAGCAGCA
GCTTTGACGACGGGTTACGTAGCGCCACCACCTCCATCACTGTTCTTTCG
CCCTGCCGGACGCTCTCTCCTTCGAGAAATGCCCGTCGACGACACCTCAT
CCATTTCTTCCTTGTACTCCGTGTCCTCTTCTCATGGACTACCATCGCCA
ATACCACCGATCAACGATGACAATGACGACCAATACCAAGACGATGACAG
CAGCGGGATCGAGATCCGCGGAGGGATGATTGCAAACTGGCGGAAATCCA
CTCCCTTGCGCCCTTGCTACGGTTGCACCCCCGGGGCACCCATGGCTTTT
TCTAACCTCTTTTCAGAGTGTTCTTTCGTCACCTTGGGGGCACATATGGG
TGTCGCCCCCGTATTCACCAACCTCACACTAAAAACAAACGACACGGTGT
TGGTGCACCTCGTCGGGTCCCGTTTTTTCTTCCCCGAGGCCAGTGAGTTG
TTTTCATTTCTGACTAGTACTTTGGGTGGCACTTGCCCGGAAGGTAATCG
ACTGCAAAATCTTACGTCAGTTTGTACGCTGGGTGGGCAGGCAGCACCTG
TTGGATCTGACGGGCCAGCGTTGTGCACGATTTATAGTGTGAATGCTACC
AAGGTTCATGGCTTTGGGAAGGAAGGTGTTGGGGAAGGGAGGGAGGAAGT
GCATGTGCAAGCTCATGGATTGTATGGTCCTGGAGAGTATCGTTTTAATT
TTCAAGACTTCAACAACGTGGGATTCCCCTATGCTTTTTGGGTTTTACAG
TATTTGAATATAGAGGCACCGGGGGAGGGAAGAAGGGAGAACACGGCAAA
CGTCACTGTCTCTGGTCAATTTAATAATCAACCTCCTCGCGTGCCACCTG
CGAGGCTATGGACGGTTACCTTCGTGGTAGCATTAGTTGTGTTCGTAGTA
TTTGCAGCCATATTCAACCCTTGGGTAGGCCCGCGAGCGATTGACCTTGG
GGCAAGAATTCCTTTGGTGAGACGCAATGTCCTGGAGGAACGACAGACAG
GCCCGACGGTACTGCCTCCTTCATCTGCATCTGTCTCGAGTCTTCAAGGG
CGGCGGTCCACTTTGATGGCGATGGGACATGGGAGTGGGAGTAGTGGGAT
GGGAGGGTCAGGGAGAGGTTTTGATTTGCGTTCGATGGCCTCGAGCGAGG
ATTACCAGTTGATGGGGAAATCAACATCTCGTCATCCGCTTACCAGATGA
TAGATACGCACAGAGGAGTCATTAATGTAGCCTTGTGTTAATTTTATAGC
GGTATGAGTCGACAGAAACTGAGGTGATATAGTTTTTCTTGTTTCAGACG
GGAGTGGTGTGGGTGGGGAACGGTAAGGGGAGGGTAGGAGGACCGGGGAG
AGGCGTTTGGATGGGCATATATTTTGCAGTCAACATCTGTACATATAAAG
CAAGTCGAGACTCGAATGAACAGACACTTGGAAAGAAAAATGAAGAAGCG
AGAGGACAGTA

protein sequence of jgi.p|Nanoce1779_2|602556

>mRNA_8117-protein ID=mRNA_8117-protein|Name=jgi.p|Nanoce1779_2|602556|organism=Nannochloropsis oceanica|type=polypeptide|length=473bp
MPRRDPHTFSIPSLQPGIDDVTTAKRSGRRTTSIRMAFSASKLVIVLLIF
VAQAKTGATAARLTTTTRSSAAAALTTGYVAPPPPSLFFRPAGRSLLREM
PVDDTSSISSLYSVSSSHGLPSPIPPINDDNDDQYQDDDSSGIEIRGGMI
ANWRKSTPLRPCYGCTPGAPMAFSNLFSECSFVTLGAHMGVAPVFTNLTL
KTNDTVLVHLVGSRFFFPEASELFSFLTSTLGGTCPEGNRLQNLTSVCTL
GGQAAPVGSDGPALCTIYSVNATKVHGFGKEGVGEGREEVHVQAHGLYGP
GEYRFNFQDFNNVGFPYAFWVLQYLNIEAPGEGRRENTANVTVSGQFNNQ
PPRVPPARLWTVTFVVALVVFVVFAAIFNPWVGPRAIDLGARIPLVRRNV
LEERQTGPTVLPPSSASVSSLQGRRSTLMAMGHGSGSSGMGGSGRGFDLR
SMASSEDYQLMGKSTSRHPLTR*

mRNA from alignment at scaffold_25:201495..203305+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8117 ID=mRNA_8117|Name=jgi.p|Nanoce1779_2|602556|organism=Nannochloropsis oceanica|type=mRNA|length=1811bp|location=Sequence derived from alignment at scaffold_25:201495..203305+ (Nannochloropsis oceanica)
ACAGGCTAAGAGCTTGGCACCCTGCGTCCTTTTTCCCCGTGCCAATCGTC
ATCCTCATCATTCTGCGTCATCCGTCCTAGCAGCGCCCAAGCTTTCTCCT
CAGTTCTTGCAGCCAAACCCTTAATATCGTGATGCCCAGGAGGGACCCAC
ATACATTTAGTATACCATCATTACAGCCAGGCATCGACGATGTTACCACA
GCAAAGAGGAGCGGCAGACGCACAACATCAATCAGGATGGCTTTTTCGGC
ATCGAAGCTCGTGATTGTCCTTCTCATCTTCGTAGCCCAAGCAAAAACTG
GGGCGACCGCCGCGAGACTGACGACGACGACAAGAAGTTCCGCAGCAGCA
GCTTTGACGACGGGTTACGTAGCGCCACCACCTCCATCACTGTTCTTTCG
CCCTGCCGGACGCTCTCTCCTTCGAGAAATGCCCGTCGACGACACCTCAT
CCATTTCTTCCTTGTACTCCGTGTCCTCTTCTCATGGACTACCATCGCCA
ATACCACCGATCAACGATGACAATGACGACCAATACCAAGACGATGACAG
CAGCGGGATCGAGATCCGCGGAGGGATGATTGCAAACTGGCGGAAATCCA
CTCCCTTGCGCCCTTGCTACGGTTGCACCCCCGGGGCACCCATGGCTTTT
TCTAACCTCTTTTCAGAGTGTTCTTTCGTCACCTTGGGGGCACATATGGG
TGTCGCCCCCGTATTCACCAACCTCACACTAAAAACAAACGACACGGTGT
TGGTGCACCTCGTCGGGTCCCGTTTTTTCTTCCCCGAGGCCAGTGAGTTG
TTTTCATTTCTGACTAGTACTTTGGGTGGCACTTGCCCGGAAGGTAATCG
ACTGCAAAATCTTACGTCAGTTTGTACGCTGGGTGGGCAGGCAGCACCTG
TTGGATCTGACGGGCCAGCGTTGTGCACGATTTATAGTGTGAATGCTACC
AAGGTTCATGGCTTTGGGAAGGAAGGTGTTGGGGAAGGGAGGGAGGAAGT
GCATGTGCAAGCTCATGGATTGTATGGTCCTGGAGAGTATCGTTTTAATT
TTCAAGACTTCAACAACGTGGGATTCCCCTATGCTTTTTGGGTTTTACAG
TATTTGAATATAGAGGCACCGGGGGAGGGAAGAAGGGAGAACACGGCAAA
CGTCACTGTCTCTGGTCAATTTAATAATCAACCTCCTCGCGTGCCACCTG
CGAGGCTATGGACGGTTACCTTCGTGGTAGCATTAGTTGTGTTCGTAGTA
TTTGCAGCCATATTCAACCCTTGGGTAGGCCCGCGAGCGATTGACCTTGG
GGCAAGAATTCCTTTGGTGAGACGCAATGTCCTGGAGGAACGACAGACAG
GCCCGACGGTACTGCCTCCTTCATCTGCATCTGTCTCGAGTCTTCAAGGG
CGGCGGTCCACTTTGATGGCGATGGGACATGGGAGTGGGAGTAGTGGGAT
GGGAGGGTCAGGGAGAGGTTTTGATTTGCGTTCGATGGCCTCGAGCGAGG
ATTACCAGTTGATGGGGAAATCAACATCTCGTCATCCGCTTACCAGATGA
TAGATACGCACAGAGGAGTCATTAATGTAGCCTTGTGTTAATTTTATAGC
GGTATGAGTCGACAGAAACTGAGGTGATATAGTTTTTCTTGTTTCAGACG
GGAGTGGTGTGGGTGGGGAACGGTAAGGGGAGGGTAGGAGGACCGGGGAG
AGGCGTTTGGATGGGCATATATTTTGCAGTCAACATCTGTACATATAAAG
CAAGTCGAGACTCGAATGAACAGACACTTGGAAAGAAAAATGAAGAAGCG
AGAGGACAGTA

Coding sequence (CDS) from alignment at scaffold_25:201495..203305+

>mRNA_8117 ID=mRNA_8117|Name=jgi.p|Nanoce1779_2|602556|organism=Nannochloropsis oceanica|type=CDS|length=1419bp|location=Sequence derived from alignment at scaffold_25:201495..203305+ (Nannochloropsis oceanica)
ATGCCCAGGAGGGACCCACATACATTTAGTATACCATCATTACAGCCAGG
CATCGACGATGTTACCACAGCAAAGAGGAGCGGCAGACGCACAACATCAA
TCAGGATGGCTTTTTCGGCATCGAAGCTCGTGATTGTCCTTCTCATCTTC
GTAGCCCAAGCAAAAACTGGGGCGACCGCCGCGAGACTGACGACGACGAC
AAGAAGTTCCGCAGCAGCAGCTTTGACGACGGGTTACGTAGCGCCACCAC
CTCCATCACTGTTCTTTCGCCCTGCCGGACGCTCTCTCCTTCGAGAAATG
CCCGTCGACGACACCTCATCCATTTCTTCCTTGTACTCCGTGTCCTCTTC
TCATGGACTACCATCGCCAATACCACCGATCAACGATGACAATGACGACC
AATACCAAGACGATGACAGCAGCGGGATCGAGATCCGCGGAGGGATGATT
GCAAACTGGCGGAAATCCACTCCCTTGCGCCCTTGCTACGGTTGCACCCC
CGGGGCACCCATGGCTTTTTCTAACCTCTTTTCAGAGTGTTCTTTCGTCA
CCTTGGGGGCACATATGGGTGTCGCCCCCGTATTCACCAACCTCACACTA
AAAACAAACGACACGGTGTTGGTGCACCTCGTCGGGTCCCGTTTTTTCTT
CCCCGAGGCCAGTGAGTTGTTTTCATTTCTGACTAGTACTTTGGGTGGCA
CTTGCCCGGAAGGTAATCGACTGCAAAATCTTACGTCAGTTTGTACGCTG
GGTGGGCAGGCAGCACCTGTTGGATCTGACGGGCCAGCGTTGTGCACGAT
TTATAGTGTGAATGCTACCAAGGTTCATGGCTTTGGGAAGGAAGGTGTTG
GGGAAGGGAGGGAGGAAGTGCATGTGCAAGCTCATGGATTGTATGGTCCT
GGAGAGTATCGTTTTAATTTTCAAGACTTCAACAACGTGGGATTCCCCTA
TGCTTTTTGGGTTTTACAGTATTTGAATATAGAGGCACCGGGGGAGGGAA
GAAGGGAGAACACGGCAAACGTCACTGTCTCTGGTCAATTTAATAATCAA
CCTCCTCGCGTGCCACCTGCGAGGCTATGGACGGTTACCTTCGTGGTAGC
ATTAGTTGTGTTCGTAGTATTTGCAGCCATATTCAACCCTTGGGTAGGCC
CGCGAGCGATTGACCTTGGGGCAAGAATTCCTTTGGTGAGACGCAATGTC
CTGGAGGAACGACAGACAGGCCCGACGGTACTGCCTCCTTCATCTGCATC
TGTCTCGAGTCTTCAAGGGCGGCGGTCCACTTTGATGGCGATGGGACATG
GGAGTGGGAGTAGTGGGATGGGAGGGTCAGGGAGAGGTTTTGATTTGCGT
TCGATGGCCTCGAGCGAGGATTACCAGTTGATGGGGAAATCAACATCTCG
TCATCCGCTTACCAGATGA

Synonyms

Publications