jgi.p|Nanoce1779_2|602554, mRNA_8115 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|602554
Unique Name	mRNA_8115
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1023
Alignment location	scaffold_25:197142..198164 +

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Properties


Property Name	Value
TranscriptId	602640
Track	FilteredModels2
ProteinId	602554

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_25	supercontig	scaffold_25:197142..198164 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|602554	gene_8115	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|602554	mRNA_8115-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8115	CDS_8115	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_25:197142..198164+
coding sequence from alignment at scaffold_25:197142..198164+

mRNA sequence

>mRNA_8115 ID=mRNA_8115|Name=jgi.p|Nanoce1779_2|602554|organism=Nannochloropsis oceanica|type=mRNA|length=1023bp
GAAATATAAAGTTCCTCTGATGTGATTCAATTTTACTACTTTTCATTTAT
CCTTTGAGTATCCCTTTTTTATGTGTGTTAAAAAACATCACTTTTCGTGT
AGCTTCGTATTCCGGTCACTTTCCCTCACTCTCGTGCGTGCCCCTATTGA
TACCCTTATTACACCTTTTCTGTCCCTTGTTCACGAGACGTTTTTCTTTT
CTCGTCGTTCAAGATCTGCGGAAAGAACGCCCTACCCATAAAGGCGGGCG
CAGTGTGAGCTTCCCCCCCTCGTTCAGGTCTCTTGGCCGGCTGCCGCGTC
GGCCACACACACGCTACATACCTCGCATGCCGTCAGTCGTTCGATTCGAC
TCGACTCACGAATCCTAGGATCATAACTTGAAAGAACAAAATAAGGAGAT
CGGCTCGCTTGTGGCTAAATGACTCTAACACTGCGCCTGTATAAACACAT
GTCTCAAATCCTACGAAAGATTTATAGAAAGCATCTGCTGTTACGGGTTC
GTGTGGTAGGACATGGAAACGGGGAGATGGATGGATACAGTAAAAAGTTT
CTTTCGTGCAGAGGTCTCAAACCTTCTACGTGGATATTTAATTTCGCTCC
CACTGTCTTTTGGTGAAGCACCATCATTGTACAGCAGTTTTGTGTTGTCG
TTATTTCCTCTCTCACTTTTCACATTTCCCATTCTTTGTTTCCTCCCTAT
TTCTATTTCTCTCTTTCCCCTCATTTCCCACCCTTCATTCTCCATTCCCC
TTTTTTCTCTTTCTACGTTCTTCTTCTCGAATTTTTTCACTCGAATTTTT
TCATCTCAATAATAAATAATACTCTGCAAAGGGTGTGGTGCCCAGCCTTT
CAAAAAGAAGGAGATAGGTCGCTGCCTTCCGCTGTCTTCGGCTGGCCACC
CTTTGTTTTCTTTCTACAACCCTTCATACCCACCCTACATACTTAAAATA
CCCACTCTGTCTCAGCACTCCAATTTGCCAAAAAATGATTTCTCACTCAC
TCTCCTTTTCTTTTCAAAAACGC

protein sequence of jgi.p|Nanoce1779_2|602554

>mRNA_8115-protein ID=mRNA_8115-protein|Name=jgi.p|Nanoce1779_2|602554|organism=Nannochloropsis oceanica|type=polypeptide|length=100bp
METGRWMDTVKSFFRAEVSNLLRGYLISLPLSFGEAPSLYSSFVLSLFPL
SLFTFPILCFLPISISLFPLISHPSFSIPLFSLSTFFFSNFFTRIFSSQ*

mRNA from alignment at scaffold_25:197142..198164+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8115 ID=mRNA_8115|Name=jgi.p|Nanoce1779_2|602554|organism=Nannochloropsis oceanica|type=mRNA|length=1023bp|location=Sequence derived from alignment at scaffold_25:197142..198164+ (Nannochloropsis oceanica)
GAAATATAAAGTTCCTCTGATGTGATTCAATTTTACTACTTTTCATTTAT
CCTTTGAGTATCCCTTTTTTATGTGTGTTAAAAAACATCACTTTTCGTGT
AGCTTCGTATTCCGGTCACTTTCCCTCACTCTCGTGCGTGCCCCTATTGA
TACCCTTATTACACCTTTTCTGTCCCTTGTTCACGAGACGTTTTTCTTTT
CTCGTCGTTCAAGATCTGCGGAAAGAACGCCCTACCCATAAAGGCGGGCG
CAGTGTGAGCTTCCCCCCCTCGTTCAGGTCTCTTGGCCGGCTGCCGCGTC
GGCCACACACACGCTACATACCTCGCATGCCGTCAGTCGTTCGATTCGAC
TCGACTCACGAATCCTAGGATCATAACTTGAAAGAACAAAATAAGGAGAT
CGGCTCGCTTGTGGCTAAATGACTCTAACACTGCGCCTGTATAAACACAT
GTCTCAAATCCTACGAAAGATTTATAGAAAGCATCTGCTGTTACGGGTTC
GTGTGGTAGGACATGGAAACGGGGAGATGGATGGATACAGTAAAAAGTTT
CTTTCGTGCAGAGGTCTCAAACCTTCTACGTGGATATTTAATTTCGCTCC
CACTGTCTTTTGGTGAAGCACCATCATTGTACAGCAGTTTTGTGTTGTCG
TTATTTCCTCTCTCACTTTTCACATTTCCCATTCTTTGTTTCCTCCCTAT
TTCTATTTCTCTCTTTCCCCTCATTTCCCACCCTTCATTCTCCATTCCCC
TTTTTTCTCTTTCTACGTTCTTCTTCTCGAATTTTTTCACTCGAATTTTT
TCATCTCAATAATAAATAATACTCTGCAAAGGGTGTGGTGCCCAGCCTTT
CAAAAAGAAGGAGATAGGTCGCTGCCTTCCGCTGTCTTCGGCTGGCCACC
CTTTGTTTTCTTTCTACAACCCTTCATACCCACCCTACATACTTAAAATA
CCCACTCTGTCTCAGCACTCCAATTTGCCAAAAAATGATTTCTCACTCAC
TCTCCTTTTCTTTTCAAAAACGC

Coding sequence (CDS) from alignment at scaffold_25:197142..198164+

>mRNA_8115 ID=mRNA_8115|Name=jgi.p|Nanoce1779_2|602554|organism=Nannochloropsis oceanica|type=CDS|length=300bp|location=Sequence derived from alignment at scaffold_25:197142..198164+ (Nannochloropsis oceanica)
ATGGAAACGGGGAGATGGATGGATACAGTAAAAAGTTTCTTTCGTGCAGA
GGTCTCAAACCTTCTACGTGGATATTTAATTTCGCTCCCACTGTCTTTTG
GTGAAGCACCATCATTGTACAGCAGTTTTGTGTTGTCGTTATTTCCTCTC
TCACTTTTCACATTTCCCATTCTTTGTTTCCTCCCTATTTCTATTTCTCT
CTTTCCCCTCATTTCCCACCCTTCATTCTCCATTCCCCTTTTTTCTCTTT
CTACGTTCTTCTTCTCGAATTTTTTCACTCGAATTTTTTCATCTCAATAA

Synonyms

Publications