jgi.p|Nanoce1779_2|532531, mRNA_8114 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|532531
Unique Name	mRNA_8114
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	981
Alignment location	scaffold_25:195573..196763 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	532617
Track	FilteredModels2
ProteinId	532531

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_25	supercontig	scaffold_25:195573..196763 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|532531	gene_8114	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|532531	mRNA_8114-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8114	CDS_8114	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_25:195573..196763+
coding sequence from alignment at scaffold_25:195573..196763+

mRNA sequence

>mRNA_8114 ID=mRNA_8114|Name=jgi.p|Nanoce1779_2|532531|organism=Nannochloropsis oceanica|type=mRNA|length=981bp
ATGCCATTGCAGGCACCACCCGCTCTGGTGGGTGGTTTGTTGAATGCCCG
AGATGTGAGGCGGTTGGTAAGTGGGTTGGACACGGAGAGTGTGAAGAGTA
AAGAGATGAGTATTGCCGTGCGTAGGCATACGATCGTGCTAAGTTTAGAT
ATCATACGTTGTCTCATTTTGTGGGATCGGATAATTGTCGTCGTGCCGGA
CGGCGCTGAATCGAATTGCTTCGGAGAGCTGGAGAGAAATTTGCGTTGGT
TGAGAGTGCAGCAGCGGGCGTTCGACATGGGTGAGGGAGGGGAGGAGGAG
GAGGAGTTTGAATTCTTGGCGTTGGAAGCAGTGTTGATGACGATTAATAA
CCATTTTAGGAATCGCTTGAAGGATATACGGCCGCACATTATCAAGAATA
GCAAGGCATTGTTAGGAAACGGAACGCTAAACACCCAGCTTCAAGATACT
CTCCGGCAGCTAAAGAGTCAAGTCGCCAATCACCAAGCTAAAGTCCGCTC
TCTCCACAAGGCTATTTTTGCTCTTCTCGACGACGAGGAACACCTCCAAA
TGCTGCACCTCACCCTGTTGCTTCAGCTCATCTCAACATGGCTGCCTTTG
GAAGCGGAGGACAACGACGAAGCTGAGATTTTGTTGGAAAGCTTTTTGGG
GGACTTTAATGAGTTGATAATAAAGTGGGAGTTGGTGAAGGAGGATATGC
AGAATACTGAGAACTATGTGACAGTAAAGTTGGACATGGCCCGCAACAAG
CTTTTGACGATCGGAACGTTGTTCGCGTTGGTTAACCTGTGTTTTGCATT
TGGTGCGCTTGTATCGGGAATTTTCGGGATGAATCTTTATAATGGGGTGA
GTGAGGGGAGTGGGAGTGAAGATAGCTTTCCTTTTTTCGTGGGAACGATT
TCGTTTATTGTTTTCATGATGACGGTGATCACTGGGAGTGTATTGGCTTA
CATGTACATGTCACGGATAATTGTCACTTGA

protein sequence of jgi.p|Nanoce1779_2|532531

>mRNA_8114-protein ID=mRNA_8114-protein|Name=jgi.p|Nanoce1779_2|532531|organism=Nannochloropsis oceanica|type=polypeptide|length=327bp
MPLQAPPALVGGLLNARDVRRLVSGLDTESVKSKEMSIAVRRHTIVLSLD
IIRCLILWDRIIVVVPDGAESNCFGELERNLRWLRVQQRAFDMGEGGEEE
EEFEFLALEAVLMTINNHFRNRLKDIRPHIIKNSKALLGNGTLNTQLQDT
LRQLKSQVANHQAKVRSLHKAIFALLDDEEHLQMLHLTLLLQLISTWLPL
EAEDNDEAEILLESFLGDFNELIIKWELVKEDMQNTENYVTVKLDMARNK
LLTIGTLFALVNLCFAFGALVSGIFGMNLYNGVSEGSGSEDSFPFFVGTI
SFIVFMMTVITGSVLAYMYMSRIIVT*

mRNA from alignment at scaffold_25:195573..196763+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8114 ID=mRNA_8114|Name=jgi.p|Nanoce1779_2|532531|organism=Nannochloropsis oceanica|type=mRNA|length=1191bp|location=Sequence derived from alignment at scaffold_25:195573..196763+ (Nannochloropsis oceanica)
ATGCCATTGCAGGCACCACCCGCTCTGGTGGGTGGTTTGTTGAATGCCCG
AGATGTGAGGCGGTTGGTAAGTGGGTTGGACACGGAGAGTGTGAAGAGTA
AAGAGATGAGTATTGCCGTGCGTAGGCATACGATCGTGCTAAGTTTAGAT
ATCATACGTTGTCTCATTTTGTGGGATCGGATAATTGTCGTCGTGCCGGA
CGGCGCTGAATCGAATTGCTTCGGAGAGCTGGAGAGAAATTTGCGTTGGT
TGAGAGTGCAGCAGCGGGCGTTCGACATGGGTGAGGGAGGGGAGGAGGAG
GAGGAGTTTGAATTCTTGGCGTTGGAAGCAGTGTTGATGACGATTAATAA
CCATTTTAGGAATCGCTTGAAGGATATACGGCCGCACATTATCAAGAATA
GCAAGGCATTGTTAGGAAACGGAACGCTAAACACCCAGCTTCAAGATACT
CTCCGGCAGCTAAAGAGTCAAGTCGCCAATCACCAAGCTAAAGTCCGCTC
TCTCCACAAGGCTATTTTTGCTCTTCTCGACGACGAGGAACACCTCCAAA
TGCTGCACCTCACCCGTATTATCACCAATAATCAGAACCACCAGCAACAG
CAGCAACAGCACTTTTTCCTGCAGAATGGGGGACTGGAAAGTGTTAACAC
TGATGCTGGCATGGCGCTAGGTGCCAGTGAAGGGAGAGCAGGAGGTGGGA
GCAGGATGGGAGGCAGAAACAGCAGTGTTGCTTGTGGTGGTGATAGTGGA
AACGGGGAGAGCAATAGCAACTACGAACAGCAGCAGCTCATCTCAACATG
GCTGCCTTTGGAAGCGGAGGACAACGACGAAGCTGAGATTTTGTTGGAAA
GCTTTTTGGGGGACTTTAATGAGTTGATAATAAAGTGGGAGTTGGTGAAG
GAGGATATGCAGAATACTGAGAACTATGTGACAGTAAAGTTGGACATGGC
CCGCAACAAGCTTTTGACGATCGGAACGTTGTTCGCGTTGGTTAACCTGT
GTTTTGCATTTGGTGCGCTTGTATCGGGAATTTTCGGGATGAATCTTTAT
AATGGGGTGAGTGAGGGGAGTGGGAGTGAAGATAGCTTTCCTTTTTTCGT
GGGAACGATTTCGTTTATTGTTTTCATGATGACGGTGATCACTGGGAGTG
TATTGGCTTACATGTACATGTCACGGATAATTGTCACTTGA

Coding sequence (CDS) from alignment at scaffold_25:195573..196763+

>mRNA_8114 ID=mRNA_8114|Name=jgi.p|Nanoce1779_2|532531|organism=Nannochloropsis oceanica|type=CDS|length=2943bp|location=Sequence derived from alignment at scaffold_25:195573..196763+ (Nannochloropsis oceanica)
ATGCCATTGCAGGCACCACCCGCTCTGGTGGGTGGTTTGTTGAATGCCCG
AGATGTGAGGCGGTTGGTAAGTGGGTTGGACACGGAGAGTGTGAAGAGTA
AAGAGATGAGTATTGCCGTGCGTAGGCATACGATCGTGCTAAGTTTAGAT
ATCATACGTTGTCTCATTTTGTGGGATCGGATAATTGTCGTCGTGCCGGA
CGGCGCTGAATCGAATTGCTTCGGAGAGCTGGAGAGAAATTTGCGTTGGT
TGAGAGTGCAGCAGCGGGCGTTCGACATGGGTGAGGGAGGGGAGGAGGAG
GAGGAGTTTGAATTCTTGGCGTTGGAAGCAGTGTTGATGACGATTAATAA
CCATTTTAGGAATCGCTTGAAGGATATACGGCCGCACATTATCAAGAATA
GCAAGGCATTGTTAGGAAACGGAACGCTAAACACCCAGCTTCAAGATACT
CTCCGGCAGCTAAAGAGTCAAGTCGCCAATCACCAAGCTAAAGTCCGCTC
TCTCCACAAGGCTATTTTTGCTCTTCTCGACGACGAGGAACACCTCCAAA
TGCTGCACCTCACCCTGTTGCTTCAGCTCATCTCAACATGGCTGCCTTTG
GAAGCGGAGGACAACGACGAAGCTGAGATTTTGTTGGAAAGCTTTTTGGG
GGACTTTAATGAGTTGATAATAAAGTGGGAGTTGGTGAAGGAGGATATGC
AGAATACTGAGAACTATGTGACAGTAAAGTTGGACATGGCCCGCAACAAG
CTTTTGACGATCGGAACGTTGTTCGCGTTGGTTAACCTGTGTTTTGCATT
TGGTGCGCTTGTATCGGGAATTTTCGGGATGAATCTTTATAATGGGGTGA
GTGAGGGGAGTGGGAGTGAAGATAGCTTTCCTTTTTTCGTGGGAACGATT
TCGTTTATTGTTTTCATGATGACGGTGATCACTGGGAGTGTATTGGCTTA
CATGTACATGTCACGGATAATTGTCACTTGAATGCCATTGCAGGCACCAC
CCGCTCTGGTGGGTGGTTTGTTGAATGCCCGAGATGTGAGGCGGTTGGTA
AGTGGGTTGGACACGGAGAGTGTGAAGAGTAAAGAGATGAGTATTGCCGT
GCGTAGGCATACGATCGTGCTAAGTTTAGATATCATACGTTGTCTCATTT
TGTGGGATCGGATAATTGTCGTCGTGCCGGACGGCGCTGAATCGAATTGC
TTCGGAGAGCTGGAGAGAAATTTGCGTTGGTTGAGAGTGCAGCAGCGGGC
GTTCGACATGGGTGAGGGAGGGGAGGAGGAGGAGGAGTTTGAATTCTTGG
CGTTGGAAGCAGTGTTGATGACGATTAATAACCATTTTAGGAATCGCTTG
AAGGATATACGGCCGCACATTATCAAGAATAGCAAGGCATTGTTAGGAAA
CGGAACGCTAAACACCCAGCTTCAAGATACTCTCCGGCAGCTAAAGAGTC
AAGTCGCCAATCACCAAGCTAAAGTCCGCTCTCTCCACAAGGCTATTTTT
GCTCTTCTCGACGACGAGGAACACCTCCAAATGCTGCACCTCACCCTGTT
GCTTCAGCTCATCTCAACATGGCTGCCTTTGGAAGCGGAGGACAACGACG
AAGCTGAGATTTTGTTGGAAAGCTTTTTGGGGGACTTTAATGAGTTGATA
ATAAAGTGGGAGTTGGTGAAGGAGGATATGCAGAATACTGAGAACTATGT
GACAGTAAAGTTGGACATGGCCCGCAACAAGCTTTTGACGATCGGAACGT
TGTTCGCGTTGGTTAACCTGTGTTTTGCATTTGGTGCGCTTGTATCGGGA
ATTTTCGGGATGAATCTTTATAATGGGGTGAGTGAGGGGAGTGGGAGTGA
AGATAGCTTTCCTTTTTTCGTGGGAACGATTTCGTTTATTGTTTTCATGA
TGACGGTGATCACTGGGAGTGTATTGGCTTACATGTACATGTCACGGATA
ATTGTCACTTGAATGCCATTGCAGGCACCACCCGCTCTGGTGGGTGGTTT
GTTGAATGCCCGAGATGTGAGGCGGTTGGTAAGTGGGTTGGACACGGAGA
GTGTGAAGAGTAAAGAGATGAGTATTGCCGTGCGTAGGCATACGATCGTG
CTAAGTTTAGATATCATACGTTGTCTCATTTTGTGGGATCGGATAATTGT
CGTCGTGCCGGACGGCGCTGAATCGAATTGCTTCGGAGAGCTGGAGAGAA
ATTTGCGTTGGTTGAGAGTGCAGCAGCGGGCGTTCGACATGGGTGAGGGA
GGGGAGGAGGAGGAGGAGTTTGAATTCTTGGCGTTGGAAGCAGTGTTGAT
GACGATTAATAACCATTTTAGGAATCGCTTGAAGGATATACGGCCGCACA
TTATCAAGAATAGCAAGGCATTGTTAGGAAACGGAACGCTAAACACCCAG
CTTCAAGATACTCTCCGGCAGCTAAAGAGTCAAGTCGCCAATCACCAAGC
TAAAGTCCGCTCTCTCCACAAGGCTATTTTTGCTCTTCTCGACGACGAGG
AACACCTCCAAATGCTGCACCTCACCCTGTTGCTTCAGCTCATCTCAACA
TGGCTGCCTTTGGAAGCGGAGGACAACGACGAAGCTGAGATTTTGTTGGA
AAGCTTTTTGGGGGACTTTAATGAGTTGATAATAAAGTGGGAGTTGGTGA
AGGAGGATATGCAGAATACTGAGAACTATGTGACAGTAAAGTTGGACATG
GCCCGCAACAAGCTTTTGACGATCGGAACGTTGTTCGCGTTGGTTAACCT
GTGTTTTGCATTTGGTGCGCTTGTATCGGGAATTTTCGGGATGAATCTTT
ATAATGGGGTGAGTGAGGGGAGTGGGAGTGAAGATAGCTTTCCTTTTTTC
GTGGGAACGATTTCGTTTATTGTTTTCATGATGACGGTGATCACTGGGAG
TGTATTGGCTTACATGTACATGTCACGGATAATTGTCACTTGA

Synonyms

Publications