jgi.p|Nanoce1779_2|602528, mRNA_8112 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|602528
Unique NamemRNA_8112
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length755
Alignment locationscaffold_25:186808..187691 -

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Properties
Property NameValue
TranscriptId602614
TrackFilteredModels2
ProteinId602528
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_25supercontigscaffold_25:186808..187691 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|602528gene_8112Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|602528mRNA_8112-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8112CDS_8112Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8112 ID=mRNA_8112|Name=jgi.p|Nanoce1779_2|602528|organism=Nannochloropsis oceanica|type=mRNA|length=755bp
CAACAGGAACCATGGCTGACGCACTCGAGGGTCTGTCCCCTGAGGAGATT
GCCCGCATTGCGGAGTCTCGTAAAAAGCGCTCTTTCAAGAAGTTTACCTT
CCGTGGCATCGACCTGGACAAGCTGCTGGACCTGAAGCCTGAGGAGCTCC
TGCCACTCTTCACCTCCCGTATCCGCCGCCGCCTCCAACGGCCTATTAAG
CGCAAGCACAAGGCCCTGGTGAAGAAGCTGAAGAACGCGAAGAAGAACAC
GGGCCCCCTGGAGAAGCCTGCCATCATCAAGACCCACCTTCGTGACTTGA
TCATCACCCCCGAGCTGATTGGCTCCATCGTGGCAATCTACAACGGCAAG
CTTTTCAACCCCGTCGAGATCAAGCCCGAGATGGTGGGCATGTACACTGG
CGAGTTTTCTATGTCTTATCGACCCGTGAAGCACGGTCGACCCGGCATTG
GCTCTACCAATTCCTCCCGTTTTATCCCTCTCCATTAAGCAAAATGAGCC
TTATGGCGTGCTAGTGCATGGTACCTGATCCCTGAGTTGCTCTGCGGGGG
GAAAGAAGGAGGGGACTTTTTATCTCGTCTCCTTCCTCCCGTCGCTGTAT
GGCATGAGTGGATGTGGCCAGGTCAGAGTGAGTTCTCCTGGGGGTGACAT
TGGGGTGGGGAGAATAGGACACGAAGACAGACGAGGGAAAGCGTGAAGGA
AGACGGCGAGACAAGGGCAAGGAGAAAGAAACAAAATCGAACCCTTATTT
CAGAA
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protein sequence of jgi.p|Nanoce1779_2|602528

>mRNA_8112-protein ID=mRNA_8112-protein|Name=jgi.p|Nanoce1779_2|602528|organism=Nannochloropsis oceanica|type=polypeptide|length=159bp
MADALEGLSPEEIARIAESRKKRSFKKFTFRGIDLDKLLDLKPEELLPLF
TSRIRRRLQRPIKRKHKALVKKLKNAKKNTGPLEKPAIIKTHLRDLIITP
ELIGSIVAIYNGKLFNPVEIKPEMVGMYTGEFSMSYRPVKHGRPGIGSTN
SSRFIPLH*
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mRNA from alignment at scaffold_25:186808..187691-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8112 ID=mRNA_8112|Name=jgi.p|Nanoce1779_2|602528|organism=Nannochloropsis oceanica|type=mRNA|length=884bp|location=Sequence derived from alignment at scaffold_25:186808..187691- (Nannochloropsis oceanica)
CAACAGGAACCATGGCTGACGCACTCGAGGGTCTGTCCCCTGAGGAGATT
GCCCGCATTGCGGAGTCTCGTAAAAAGCGCTCTTTCAAGAAGTTTACCTT
CCGTGGCATCGACCTGGACAAGCTGCTGGACCTGAAGCCTGAGGAGCTCC
TGCCACTCTTCACCTCCCGTATCCGCCGCCGCCTCCAACGGCCTATTAAG
CGCAAGCACAAGGCCCTGGTGAAGAAGCTGAAGAACGCGAAGAAGAACAC
GGGCCCCCTGGAGAAGCCTGCCATCATCAAGACCCACCTTCGTGACTTGA
TCATCACCCCCGAGCTGATTGGCTCCATCGTGGCAATCTACAACGGCAAG
CTTTTCAACCCCGTCGAGATCAAGCCCGAGATGGTGGGCATGTACACTGG
CGAGTTTTCTATGTCTTATCGGTACGTGTTGTGGCATGTGCGTTGGTTGG
AAGGACTGAAGCTTAATCAGGAAGGAGATAGAAGTGCCCCCGTGCACGAT
TATTATATGACAAAAAGGTCTCACATTTCTTTGCTATTCCTCCAACACAG
ACCCGTGAAGCACGGTCGACCCGGCATTGGCTCTACCAATTCCTCCCGTT
TTATCCCTCTCCATTAAGCAAAATGAGCCTTATGGCGTGCTAGTGCATGG
TACCTGATCCCTGAGTTGCTCTGCGGGGGGAAAGAAGGAGGGGACTTTTT
ATCTCGTCTCCTTCCTCCCGTCGCTGTATGGCATGAGTGGATGTGGCCAG
GTCAGAGTGAGTTCTCCTGGGGGTGACATTGGGGTGGGGAGAATAGGACA
CGAAGACAGACGAGGGAAAGCGTGAAGGAAGACGGCGAGACAAGGGCAAG
GAGAAAGAAACAAAATCGAACCCTTATTTCAGAA
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Coding sequence (CDS) from alignment at scaffold_25:186808..187691-

>mRNA_8112 ID=mRNA_8112|Name=jgi.p|Nanoce1779_2|602528|organism=Nannochloropsis oceanica|type=CDS|length=954bp|location=Sequence derived from alignment at scaffold_25:186808..187691- (Nannochloropsis oceanica)
ACCCGTGAAGCACGGTCGACCCGGCATTGGCTCTACCAATTCCTCCCGTT
TTATCCCTCTCCATTAAATGGCTGACGCACTCGAGGGTCTGTCCCCTGAG
GAGATTGCCCGCATTGCGGAGTCTCGTAAAAAGCGCTCTTTCAAGAAGTT
TACCTTCCGTGGCATCGACCTGGACAAGCTGCTGGACCTGAAGCCTGAGG
AGCTCCTGCCACTCTTCACCTCCCGTATCCGCCGCCGCCTCCAACGGCCT
ATTAAGCGCAAGCACAAGGCCCTGGTGAAGAAGCTGAAGAACGCGAAGAA
GAACACGGGCCCCCTGGAGAAGCCTGCCATCATCAAGACCCACCTTCGTG
ACTTGATCATCACCCCCGAGCTGATTGGCTCCATCGTGGCAATCTACAAC
GGCAAGCTTTTCAACCCCGTCGAGATCAAGCCCGAGATGGTGGGCATGTA
CACTGGCGAGTTTTCTATGTCTTATCGACCCGTGAAGCACGGTCGACCCG
GCATTGGCTCTACCAATTCCTCCCGTTTTATCCCTCTCCATTAAATGGCT
GACGCACTCGAGGGTCTGTCCCCTGAGGAGATTGCCCGCATTGCGGAGTC
TCGTAAAAAGCGCTCTTTCAAGAAGTTTACCTTCCGTGGCATCGACCTGG
ACAAGCTGCTGGACCTGAAGCCTGAGGAGCTCCTGCCACTCTTCACCTCC
CGTATCCGCCGCCGCCTCCAACGGCCTATTAAGCGCAAGCACAAGGCCCT
GGTGAAGAAGCTGAAGAACGCGAAGAAGAACACGGGCCCCCTGGAGAAGC
CTGCCATCATCAAGACCCACCTTCGTGACTTGATCATCACCCCCGAGCTG
ATTGGCTCCATCGTGGCAATCTACAACGGCAAGCTTTTCAACCCCGTCGA
GATCAAGCCCGAGATGGTGGGCATGTACACTGGCGAGTTTTCTATGTCTT
ATCG
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Synonyms
Publications