jgi.p|Nanoce1779_2|559583, mRNA_8106 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|559583
Unique NamemRNA_8106
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1054
Alignment locationscaffold_25:173124..174177 -

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Properties
Property NameValue
TranscriptId559669
TrackFilteredModels2
ProteinId559583
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_25supercontigscaffold_25:173124..174177 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|559583gene_8106Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|559583mRNA_8106-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8106CDS_8106Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8106 ID=mRNA_8106|Name=jgi.p|Nanoce1779_2|559583|organism=Nannochloropsis oceanica|type=mRNA|length=1054bp
AACAGAACACAAGCAGAGAATCTCCTCCTATCTCCTCTACTTCTCCTCCC
CTACTATTTTCTACAATGCACGGCATTGGTACCGAGATTTTGGACCTGGG
CAAGTCCCTCAAGGCTGCGGCAGAGCCCGGGTCCGCCATGCCCCCTCAGG
CCAAGGCGGAAGAGGGTGGCTTTTTGCTGCCGGCAGTGGAGGACCCTGCT
GCATTCTGCAAGGCCAACTTTGGGGTGGGGTACGGCATAGACAATCACCA
AGAGCTCAAATTTGCGAAGGGTACAACCACCCTGGCTTTCAAATTTGATC
ATGGCATCATCGTTGCGGTGGATTCCCGGTCGACGCAAGGTGCTTATGTG
GCCTCGGGCACGGTCAAAAAGGTGATTGAGATCAACCCTTACTTGCTAGG
GACCATGGCGGGCGGCGCCGCGGACTGCTCTTTCTGGGAGCGGAACTTAG
GCATTCAGTGCCGGCTTTATGAGCTGCGTCACAAGGAGCGTATCTCTGTG
GCGGCTGCGAGCAAGCTGCTGGCTAACACGGTGATGCAATACCGAGGCTA
TGGGCTGTCAATGGGGACTATGATTACGGGGTGGGACAAGACCGGCCCCC
AGCTTTACTATGTCGACAACGACGGCATGCGCCTCAAGGGTGACCTCTTC
TCGGTGGGTTCTGGGTCAACCTATGCCTATGGTGTGTTAGACGCAAACTA
CCGCAAGGACTTGAGTGCAGAGGATGCGATTGAGTTGGGACGGCGCGCCA
TTTATCACGCCACCCACCGGGATGCGTACTCAGGAGGGGTCATCAATGTG
TACCACGTGCAGGAGCAGGGGTGGGTGAAGGTGTTTTCTGGTGACTGTGT
AGATCTGCATTACAAGTACCAAGAGGAGAAGGTCACAAGGATGGTTATGT
AAACAAATATCGAAGAGGAGGAGGGAGGGAGGCGGGGAGGGAGGCAGAAA
TGGCGTGATGGAACAAAAAGGAGAAAGTAGAGAATCCAGTAGGTTCCAGA
GCAAACGCGCTATTGGATGGACCAGGTAGGAAAGAAGGAAACATGAAAAT
GGTT
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protein sequence of jgi.p|Nanoce1779_2|559583

>mRNA_8106-protein ID=mRNA_8106-protein|Name=jgi.p|Nanoce1779_2|559583|organism=Nannochloropsis oceanica|type=polypeptide|length=279bp
MHGIGTEILDLGKSLKAAAEPGSAMPPQAKAEEGGFLLPAVEDPAAFCKA
NFGVGYGIDNHQELKFAKGTTTLAFKFDHGIIVAVDSRSTQGAYVASGTV
KKVIEINPYLLGTMAGGAADCSFWERNLGIQCRLYELRHKERISVAAASK
LLANTVMQYRGYGLSMGTMITGWDKTGPQLYYVDNDGMRLKGDLFSVGSG
STYAYGVLDANYRKDLSAEDAIELGRRAIYHATHRDAYSGGVINVYHVQE
QGWVKVFSGDCVDLHYKYQEEKVTRMVM*
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mRNA from alignment at scaffold_25:173124..174177-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8106 ID=mRNA_8106|Name=jgi.p|Nanoce1779_2|559583|organism=Nannochloropsis oceanica|type=mRNA|length=1054bp|location=Sequence derived from alignment at scaffold_25:173124..174177- (Nannochloropsis oceanica)
AACAGAACACAAGCAGAGAATCTCCTCCTATCTCCTCTACTTCTCCTCCC
CTACTATTTTCTACAATGCACGGCATTGGTACCGAGATTTTGGACCTGGG
CAAGTCCCTCAAGGCTGCGGCAGAGCCCGGGTCCGCCATGCCCCCTCAGG
CCAAGGCGGAAGAGGGTGGCTTTTTGCTGCCGGCAGTGGAGGACCCTGCT
GCATTCTGCAAGGCCAACTTTGGGGTGGGGTACGGCATAGACAATCACCA
AGAGCTCAAATTTGCGAAGGGTACAACCACCCTGGCTTTCAAATTTGATC
ATGGCATCATCGTTGCGGTGGATTCCCGGTCGACGCAAGGTGCTTATGTG
GCCTCGGGCACGGTCAAAAAGGTGATTGAGATCAACCCTTACTTGCTAGG
GACCATGGCGGGCGGCGCCGCGGACTGCTCTTTCTGGGAGCGGAACTTAG
GCATTCAGTGCCGGCTTTATGAGCTGCGTCACAAGGAGCGTATCTCTGTG
GCGGCTGCGAGCAAGCTGCTGGCTAACACGGTGATGCAATACCGAGGCTA
TGGGCTGTCAATGGGGACTATGATTACGGGGTGGGACAAGACCGGCCCCC
AGCTTTACTATGTCGACAACGACGGCATGCGCCTCAAGGGTGACCTCTTC
TCGGTGGGTTCTGGGTCAACCTATGCCTATGGTGTGTTAGACGCAAACTA
CCGCAAGGACTTGAGTGCAGAGGATGCGATTGAGTTGGGACGGCGCGCCA
TTTATCACGCCACCCACCGGGATGCGTACTCAGGAGGGGTCATCAATGTG
TACCACGTGCAGGAGCAGGGGTGGGTGAAGGTGTTTTCTGGTGACTGTGT
AGATCTGCATTACAAGTACCAAGAGGAGAAGGTCACAAGGATGGTTATGT
AAACAAATATCGAAGAGGAGGAGGGAGGGAGGCGGGGAGGGAGGCAGAAA
TGGCGTGATGGAACAAAAAGGAGAAAGTAGAGAATCCAGTAGGTTCCAGA
GCAAACGCGCTATTGGATGGACCAGGTAGGAAAGAAGGAAACATGAAAAT
GGTT
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Coding sequence (CDS) from alignment at scaffold_25:173124..174177-

>mRNA_8106 ID=mRNA_8106|Name=jgi.p|Nanoce1779_2|559583|organism=Nannochloropsis oceanica|type=CDS|length=837bp|location=Sequence derived from alignment at scaffold_25:173124..174177- (Nannochloropsis oceanica)
ATGCACGGCATTGGTACCGAGATTTTGGACCTGGGCAAGTCCCTCAAGGC
TGCGGCAGAGCCCGGGTCCGCCATGCCCCCTCAGGCCAAGGCGGAAGAGG
GTGGCTTTTTGCTGCCGGCAGTGGAGGACCCTGCTGCATTCTGCAAGGCC
AACTTTGGGGTGGGGTACGGCATAGACAATCACCAAGAGCTCAAATTTGC
GAAGGGTACAACCACCCTGGCTTTCAAATTTGATCATGGCATCATCGTTG
CGGTGGATTCCCGGTCGACGCAAGGTGCTTATGTGGCCTCGGGCACGGTC
AAAAAGGTGATTGAGATCAACCCTTACTTGCTAGGGACCATGGCGGGCGG
CGCCGCGGACTGCTCTTTCTGGGAGCGGAACTTAGGCATTCAGTGCCGGC
TTTATGAGCTGCGTCACAAGGAGCGTATCTCTGTGGCGGCTGCGAGCAAG
CTGCTGGCTAACACGGTGATGCAATACCGAGGCTATGGGCTGTCAATGGG
GACTATGATTACGGGGTGGGACAAGACCGGCCCCCAGCTTTACTATGTCG
ACAACGACGGCATGCGCCTCAAGGGTGACCTCTTCTCGGTGGGTTCTGGG
TCAACCTATGCCTATGGTGTGTTAGACGCAAACTACCGCAAGGACTTGAG
TGCAGAGGATGCGATTGAGTTGGGACGGCGCGCCATTTATCACGCCACCC
ACCGGGATGCGTACTCAGGAGGGGTCATCAATGTGTACCACGTGCAGGAG
CAGGGGTGGGTGAAGGTGTTTTCTGGTGACTGTGTAGATCTGCATTACAA
GTACCAAGAGGAGAAGGTCACAAGGATGGTTATGTAA
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Synonyms
Publications