jgi.p|Nanoce1779_2|532502, mRNA_8102 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|532502
Unique NamemRNA_8102
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1125
Alignment locationscaffold_25:159642..160766 -

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Properties
Property NameValue
TranscriptId532588
TrackFilteredModels2
ProteinId532502
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_25supercontigscaffold_25:159642..160766 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|532502gene_8102Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8102CDS_8102Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|532502mRNA_8102-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8102 ID=mRNA_8102|Name=jgi.p|Nanoce1779_2|532502|organism=Nannochloropsis oceanica|type=mRNA|length=1125bp
ATGTTTGGCGGGCGCTTGGGAGGAAGGTTGAAGCATATCCACCACACGCA
TCACCGTGGGAGTGAGGATGCTGAGGAGGAAGAGATTTATGAGGCTGAGG
GCGGGTACATCTCTTCCTCCTCATCAGACGGCACTAAGTCCACCATGGAG
CACCTGCAGCACGACCCCAGCAGTCACCAGCAGACACACCACTCCACCCC
TCCTGCCGCCTCGGCCTTCAGCCGTCGCCACGGCCAAGGACCTAGTGCCG
CGGTTGTGGCTGCTGCGGCCGCTGCTGCCTCTAACCGTAGCCGGGGAAGT
AGCAGTATCCACAAGAAGTCGAGCTCGTCCGGCAGTGGCAGCGGCGGCAA
CAATGCCTCTCGCCCTGTCCGCACCGGAGCCGCAGCTCGCCGACACAATC
ATATTCAAGAGATGCGCCGCTCACCGCCCCCTGGTGCCATGACTGGTGGT
GGACTGCACCATCCCCAGGCTCGGGCCAGTGGAGGAGGGGCGACATCGGT
GGCGGCGGGTCCGAGGAAGTGCAACTGCCGCAAGTCGAAGTGCCTGAAGC
TATATTGCGAGTGTTTCGCCGTGGGAGCTTACTGCCAGGACGACTGCGGC
TGTCTGGACTGTAACAATACCTTGGCCTTCGAGCACGTCCGCACACAGGC
CATGGACAACATCCTTAGCCGCAATCCGCACGCCTTCACGGAAAAGATCC
AATTTATCGAGGCCGGGGCCACGGGAGCTGTGGCTGCAGGAGCTGGTCGC
CGGGTCAGCTTGGCGGGGGGGCTGCGGGGTGAGGGCGGGGAGACGACGGT
GATTGGGGGTATGCAGGGCTCGGCGGGCGGCATGCAGCCCACGGCCAAGC
ACGTGCGCGGCTGCAACTGCAAGAAGTCATTGTGCATAAAAAAATACTGC
GAGTGCTTCTTCGCGGGCGTCTACTGCGGCGAGAACTGCCAGTGTGAGGG
CTGCCAAAACAACTTGGAGGCCTCGGCCGGCGTCCACGCCTTCAAAAAAC
GCACGAGCAGCACCGCCACCAAACAAAAGCAACACCAGCAGCAGCAGATG
CAGGCCTCCCCGTCTCCGTCGGGCACGCCGAAACTTTCCCCCCCTCACGA
TATGGTGGAAGTCACTGCTCTGTAA
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protein sequence of jgi.p|Nanoce1779_2|532502

>mRNA_8102-protein ID=mRNA_8102-protein|Name=jgi.p|Nanoce1779_2|532502|organism=Nannochloropsis oceanica|type=polypeptide|length=375bp
MFGGRLGGRLKHIHHTHHRGSEDAEEEEIYEAEGGYISSSSSDGTKSTME
HLQHDPSSHQQTHHSTPPAASAFSRRHGQGPSAAVVAAAAAAASNRSRGS
SSIHKKSSSSGSGSGGNNASRPVRTGAAARRHNHIQEMRRSPPPGAMTGG
GLHHPQARASGGGATSVAAGPRKCNCRKSKCLKLYCECFAVGAYCQDDCG
CLDCNNTLAFEHVRTQAMDNILSRNPHAFTEKIQFIEAGATGAVAAGAGR
RVSLAGGLRGEGGETTVIGGMQGSAGGMQPTAKHVRGCNCKKSLCIKKYC
ECFFAGVYCGENCQCEGCQNNLEASAGVHAFKKRTSSTATKQKQHQQQQM
QASPSPSGTPKLSPPHDMVEVTAL*
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mRNA from alignment at scaffold_25:159642..160766-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8102 ID=mRNA_8102|Name=jgi.p|Nanoce1779_2|532502|organism=Nannochloropsis oceanica|type=mRNA|length=1125bp|location=Sequence derived from alignment at scaffold_25:159642..160766- (Nannochloropsis oceanica)
ATGTTTGGCGGGCGCTTGGGAGGAAGGTTGAAGCATATCCACCACACGCA
TCACCGTGGGAGTGAGGATGCTGAGGAGGAAGAGATTTATGAGGCTGAGG
GCGGGTACATCTCTTCCTCCTCATCAGACGGCACTAAGTCCACCATGGAG
CACCTGCAGCACGACCCCAGCAGTCACCAGCAGACACACCACTCCACCCC
TCCTGCCGCCTCGGCCTTCAGCCGTCGCCACGGCCAAGGACCTAGTGCCG
CGGTTGTGGCTGCTGCGGCCGCTGCTGCCTCTAACCGTAGCCGGGGAAGT
AGCAGTATCCACAAGAAGTCGAGCTCGTCCGGCAGTGGCAGCGGCGGCAA
CAATGCCTCTCGCCCTGTCCGCACCGGAGCCGCAGCTCGCCGACACAATC
ATATTCAAGAGATGCGCCGCTCACCGCCCCCTGGTGCCATGACTGGTGGT
GGACTGCACCATCCCCAGGCTCGGGCCAGTGGAGGAGGGGCGACATCGGT
GGCGGCGGGTCCGAGGAAGTGCAACTGCCGCAAGTCGAAGTGCCTGAAGC
TATATTGCGAGTGTTTCGCCGTGGGAGCTTACTGCCAGGACGACTGCGGC
TGTCTGGACTGTAACAATACCTTGGCCTTCGAGCACGTCCGCACACAGGC
CATGGACAACATCCTTAGCCGCAATCCGCACGCCTTCACGGAAAAGATCC
AATTTATCGAGGCCGGGGCCACGGGAGCTGTGGCTGCAGGAGCTGGTCGC
CGGGTCAGCTTGGCGGGGGGGCTGCGGGGTGAGGGCGGGGAGACGACGGT
GATTGGGGGTATGCAGGGCTCGGCGGGCGGCATGCAGCCCACGGCCAAGC
ACGTGCGCGGCTGCAACTGCAAGAAGTCATTGTGCATAAAAAAATACTGC
GAGTGCTTCTTCGCGGGCGTCTACTGCGGCGAGAACTGCCAGTGTGAGGG
CTGCCAAAACAACTTGGAGGCCTCGGCCGGCGTCCACGCCTTCAAAAAAC
GCACGAGCAGCACCGCCACCAAACAAAAGCAACACCAGCAGCAGCAGATG
CAGGCCTCCCCGTCTCCGTCGGGCACGCCGAAACTTTCCCCCCCTCACGA
TATGGTGGAAGTCACTGCTCTGTAA
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Coding sequence (CDS) from alignment at scaffold_25:159642..160766-

>mRNA_8102 ID=mRNA_8102|Name=jgi.p|Nanoce1779_2|532502|organism=Nannochloropsis oceanica|type=CDS|length=1125bp|location=Sequence derived from alignment at scaffold_25:159642..160766- (Nannochloropsis oceanica)
ATGTTTGGCGGGCGCTTGGGAGGAAGGTTGAAGCATATCCACCACACGCA
TCACCGTGGGAGTGAGGATGCTGAGGAGGAAGAGATTTATGAGGCTGAGG
GCGGGTACATCTCTTCCTCCTCATCAGACGGCACTAAGTCCACCATGGAG
CACCTGCAGCACGACCCCAGCAGTCACCAGCAGACACACCACTCCACCCC
TCCTGCCGCCTCGGCCTTCAGCCGTCGCCACGGCCAAGGACCTAGTGCCG
CGGTTGTGGCTGCTGCGGCCGCTGCTGCCTCTAACCGTAGCCGGGGAAGT
AGCAGTATCCACAAGAAGTCGAGCTCGTCCGGCAGTGGCAGCGGCGGCAA
CAATGCCTCTCGCCCTGTCCGCACCGGAGCCGCAGCTCGCCGACACAATC
ATATTCAAGAGATGCGCCGCTCACCGCCCCCTGGTGCCATGACTGGTGGT
GGACTGCACCATCCCCAGGCTCGGGCCAGTGGAGGAGGGGCGACATCGGT
GGCGGCGGGTCCGAGGAAGTGCAACTGCCGCAAGTCGAAGTGCCTGAAGC
TATATTGCGAGTGTTTCGCCGTGGGAGCTTACTGCCAGGACGACTGCGGC
TGTCTGGACTGTAACAATACCTTGGCCTTCGAGCACGTCCGCACACAGGC
CATGGACAACATCCTTAGCCGCAATCCGCACGCCTTCACGGAAAAGATCC
AATTTATCGAGGCCGGGGCCACGGGAGCTGTGGCTGCAGGAGCTGGTCGC
CGGGTCAGCTTGGCGGGGGGGCTGCGGGGTGAGGGCGGGGAGACGACGGT
GATTGGGGGTATGCAGGGCTCGGCGGGCGGCATGCAGCCCACGGCCAAGC
ACGTGCGCGGCTGCAACTGCAAGAAGTCATTGTGCATAAAAAAATACTGC
GAGTGCTTCTTCGCGGGCGTCTACTGCGGCGAGAACTGCCAGTGTGAGGG
CTGCCAAAACAACTTGGAGGCCTCGGCCGGCGTCCACGCCTTCAAAAAAC
GCACGAGCAGCACCGCCACCAAACAAAAGCAACACCAGCAGCAGCAGATG
CAGGCCTCCCCGTCTCCGTCGGGCACGCCGAAACTTTCCCCCCCTCACGA
TATGGTGGAAGTCACTGCTCTGTAA
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Synonyms
Publications