jgi.p|Nanoce1779_2|627612, mRNA_81 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|627612
Unique Name	mRNA_81
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1196
Alignment location	scaffold_3:214184..215484 +

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Properties


Property Name	Value
TranscriptId	627698
Track	FilteredModels2
ProteinId	627612

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_3	supercontig	scaffold_3:214184..215484 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|627612	gene_81	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|627612	mRNA_81-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_81	CDS_81	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_3:214184..215484+
coding sequence from alignment at scaffold_3:214184..215484+

mRNA sequence

>mRNA_81 ID=mRNA_81|Name=jgi.p|Nanoce1779_2|627612|organism=Nannochloropsis oceanica|type=mRNA|length=1196bp
AACAGGACAATCCCTTCCTAAATATGCCTTCCAAGAAGGCGAAGAAGAAG
CTGGGGTCGACCGCCGCGTTGTCACCCAAGAGGGGCAAGGCATCGTTCCG
GCAGGCCGCCATCGATCCAAGAGAGATGGCGCAGATCGAGGCTCTGAAGG
CAAAAGCAATCCAGCTCCGCCATGAGCGGGACGCTTTAATTCAAGACACT
CAGGTGATCCGGCAAGCCACTCTTAAATATCACGCCGCCTGGATCACGGA
CAAGGAGAATTTGCGCACCACTAAGGCCGAAGTCCAGGCCCTTGGGGTGC
AATGCCACGACTTGCAACATGCCCACCACCAGCGTGTCACCGATTGCAAG
AAAGAGCTGCGCGTTCAAATTCTCGGACAACAACAAGAAGTAGCTGAGCA
CAAAATTCAGGCATATGCAGCATGCCAGGGGCAGTGGCAGGCGCAGCAGA
GGACCGTGGACGGCTTACGGCAAGAGTACCGCTTCCGTCAGATTCAAGTC
AAGGCACACGAAGCTGCGCAGGCCTCTTTGCTTGTCAGCGCCAAGAAGGA
GCACGCGTACCAGGCCACAGCGCTTATCCATGAATATGAGGTCAAAACAG
AGCGCATTTTTCAAGACCACCACCGTCAGGTCCAGGCGCTGAACGCCGCT
GCGGACGTGAAGCGGGAGGCCGAAATGGAGATGCTGGCCCGCGACAAGGC
GGCCGCACTGACCGCTGTCAAGGCGCGGCAACACGAGGAATTGCACGATC
TTAAGGAGTACTATAACAAGGCCCTCCACCGTCAGTGCCAGCTTCTAGAT
GCTGGCGAGGCCAAGCTGAATGAGCTGCGACGCAAGGCGAGGGAGGACCA
CAAATACCTTGCGCAGTTAGTGAAAAAACACGATCAGACCCTTGCCCAGC
CCTTGGCAAAAGCCACGAATACACTTGCCGGTTTAGAGAGTGCCCATGCT
TCCTACCAGGAGGAAAAGCGGTTGCTCCAGAGCCTTCGGGAGCAGGTGCA
AATGAAGGAGCGGAGGCTGCTAGCCCTGGAGAGGGAGAACGAGGAGCTCG
ACCTTCGCTTCTCAATCCTTTGTGAGGAGGCAGCGAGGCGGCGTCGTACT
CGACAAGCGACTATTCTTCAACGCCAGCAGCGGGCGGATTTGTTGGTTTT
GTTGCGGGAGCAGATTGCGCCGGCGGGAGTCGTGTGGGGGGCGTGA

protein sequence of jgi.p|Nanoce1779_2|627612

>mRNA_81-protein ID=mRNA_81-protein|Name=jgi.p|Nanoce1779_2|627612|organism=Nannochloropsis oceanica|type=polypeptide|length=391bp
MPSKKAKKKLGSTAALSPKRGKASFRQAAIDPREMAQIEALKAKAIQLRH
ERDALIQDTQVIRQATLKYHAAWITDKENLRTTKAEVQALGVQCHDLQHA
HHQRVTDCKKELRVQILGQQQEVAEHKIQAYAACQGQWQAQQRTVDGLRQ
EYRFRQIQVKAHEAAQASLLVSAKKEHAYQATALIHEYEVKTERIFQDHH
RQVQALNAAADVKREAEMEMLARDKAAALTAVKARQHEELHDLKEYYNKA
LHRQCQLLDAGEAKLNELRRKAREDHKYLAQLVKKHDQTLAQPLAKATNT
LAGLESAHASYQEEKRLLQSLREQVQMKERRLLALERENEELDLRFSILC
EEAARRRRTRQATILQRQQRADLLVLLREQIAPAGVVWGA*

mRNA from alignment at scaffold_3:214184..215484+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_81 ID=mRNA_81|Name=jgi.p|Nanoce1779_2|627612|organism=Nannochloropsis oceanica|type=mRNA|length=1301bp|location=Sequence derived from alignment at scaffold_3:214184..215484+ (Nannochloropsis oceanica)
AACAGGACAATCCCTTCCTAAATATGCCTTCCAAGAAGGCGAAGAAGAAG
CTGGGGTCGACCGCCGCGTTGTCACCCAAGAGGGGCAAGGCATCGTTCCG
GCAGGCCGCCATCGATCCAAGAGAGATGGCGCAGATCGAGGTACGCAGCG
TATACATTGATACATTTTCTACATGTCCCACTCAATGTATTTACCTATGC
AGTGCATACGTCTTTCACACATTATCCATCCTCCCTCTCTCCTAGGCTCT
GAAGGCAAAAGCAATCCAGCTCCGCCATGAGCGGGACGCTTTAATTCAAG
ACACTCAGGTGATCCGGCAAGCCACTCTTAAATATCACGCCGCCTGGATC
ACGGACAAGGAGAATTTGCGCACCACTAAGGCCGAAGTCCAGGCCCTTGG
GGTGCAATGCCACGACTTGCAACATGCCCACCACCAGCGTGTCACCGATT
GCAAGAAAGAGCTGCGCGTTCAAATTCTCGGACAACAACAAGAAGTAGCT
GAGCACAAAATTCAGGCATATGCAGCATGCCAGGGGCAGTGGCAGGCGCA
GCAGAGGACCGTGGACGGCTTACGGCAAGAGTACCGCTTCCGTCAGATTC
AAGTCAAGGCACACGAAGCTGCGCAGGCCTCTTTGCTTGTCAGCGCCAAG
AAGGAGCACGCGTACCAGGCCACAGCGCTTATCCATGAATATGAGGTCAA
AACAGAGCGCATTTTTCAAGACCACCACCGTCAGGTCCAGGCGCTGAACG
CCGCTGCGGACGTGAAGCGGGAGGCCGAAATGGAGATGCTGGCCCGCGAC
AAGGCGGCCGCACTGACCGCTGTCAAGGCGCGGCAACACGAGGAATTGCA
CGATCTTAAGGAGTACTATAACAAGGCCCTCCACCGTCAGTGCCAGCTTC
TAGATGCTGGCGAGGCCAAGCTGAATGAGCTGCGACGCAAGGCGAGGGAG
GACCACAAATACCTTGCGCAGTTAGTGAAAAAACACGATCAGACCCTTGC
CCAGCCCTTGGCAAAAGCCACGAATACACTTGCCGGTTTAGAGAGTGCCC
ATGCTTCCTACCAGGAGGAAAAGCGGTTGCTCCAGAGCCTTCGGGAGCAG
GTGCAAATGAAGGAGCGGAGGCTGCTAGCCCTGGAGAGGGAGAACGAGGA
GCTCGACCTTCGCTTCTCAATCCTTTGTGAGGAGGCAGCGAGGCGGCGTC
GTACTCGACAAGCGACTATTCTTCAACGCCAGCAGCGGGCGGATTTGTTG
GTTTTGTTGCGGGAGCAGATTGCGCCGGCGGGAGTCGTGTGGGGGGCGTG
A

Coding sequence (CDS) from alignment at scaffold_3:214184..215484+

>mRNA_81 ID=mRNA_81|Name=jgi.p|Nanoce1779_2|627612|organism=Nannochloropsis oceanica|type=CDS|length=2346bp|location=Sequence derived from alignment at scaffold_3:214184..215484+ (Nannochloropsis oceanica)
ATGCCTTCCAAGAAGGCGAAGAAGAAGCTGGGGTCGACCGCCGCGTTGTC
ACCCAAGAGGGGCAAGGCATCGTTCCGGCAGGCCGCCATCGATCCAAGAG
AGATGGCGCAGATCGAGGCTCTGAAGGCAAAAGCAATCCAGCTCCGCCAT
GAGCGGGACGCTTTAATTCAAGACACTCAGGTGATCCGGCAAGCCACTCT
TAAATATCACGCCGCCTGGATCACGGACAAGGAGAATTTGCGCACCACTA
AGGCCGAAGTCCAGGCCCTTGGGGTGCAATGCCACGACTTGCAACATGCC
CACCACCAGCGTGTCACCGATTGCAAGAAAGAGCTGCGCGTTCAAATTCT
CGGACAACAACAAGAAGTAGCTGAGCACAAAATTCAGGCATATGCAGCAT
GCCAGGGGCAGTGGCAGGCGCAGCAGAGGACCGTGGACGGCTTACGGCAA
GAGTACCGCTTCCGTCAGATTCAAGTCAAGGCACACGAAGCTGCGCAGGC
CTCTTTGCTTGTCAGCGCCAAGAAGGAGCACGCGTACCAGGCCACAGCGC
TTATCCATGAATATGAGGTCAAAACAGAGCGCATTTTTCAAGACCACCAC
CGTCAGGTCCAGGCGCTGAACGCCGCTGCGGACGTGAAGCGGGAGGCCGA
AATGGAGATGCTGGCCCGCGACAAGGCGGCCGCACTGACCGCTGTCAAGG
CGCGGCAACACGAGGAATTGCACGATCTTAAGGAGTACTATAACAAGGCC
CTCCACCGTCAGTGCCAGCTTCTAGATGCTGGCGAGGCCAAGCTGAATGA
GCTGCGACGCAAGGCGAGGGAGGACCACAAATACCTTGCGCAGTTAGTGA
AAAAACACGATCAGACCCTTGCCCAGCCCTTGGCAAAAGCCACGAATACA
CTTGCCGGTTTAGAGAGTGCCCATGCTTCCTACCAGGAGGAAAAGCGGTT
GCTCCAGAGCCTTCGGGAGCAGGTGCAAATGAAGGAGCGGAGGCTGCTAG
CCCTGGAGAGGGAGAACGAGGAGCTCGACCTTCGCTTCTCAATCCTTTGT
GAGGAGGCAGCGAGGCGGCGTCGTACTCGACAAGCGACTATTCTTCAACG
CCAGCAGCGGGCGGATTTGTTGGTTTTGTTGCGGGAGCAGATTGCGCCGG
CGGGAGTCGTGTGGGGGGCGTGAATGCCTTCCAAGAAGGCGAAGAAGAAG
CTGGGGTCGACCGCCGCGTTGTCACCCAAGAGGGGCAAGGCATCGTTCCG
GCAGGCCGCCATCGATCCAAGAGAGATGGCGCAGATCGAGGCTCTGAAGG
CAAAAGCAATCCAGCTCCGCCATGAGCGGGACGCTTTAATTCAAGACACT
CAGGTGATCCGGCAAGCCACTCTTAAATATCACGCCGCCTGGATCACGGA
CAAGGAGAATTTGCGCACCACTAAGGCCGAAGTCCAGGCCCTTGGGGTGC
AATGCCACGACTTGCAACATGCCCACCACCAGCGTGTCACCGATTGCAAG
AAAGAGCTGCGCGTTCAAATTCTCGGACAACAACAAGAAGTAGCTGAGCA
CAAAATTCAGGCATATGCAGCATGCCAGGGGCAGTGGCAGGCGCAGCAGA
GGACCGTGGACGGCTTACGGCAAGAGTACCGCTTCCGTCAGATTCAAGTC
AAGGCACACGAAGCTGCGCAGGCCTCTTTGCTTGTCAGCGCCAAGAAGGA
GCACGCGTACCAGGCCACAGCGCTTATCCATGAATATGAGGTCAAAACAG
AGCGCATTTTTCAAGACCACCACCGTCAGGTCCAGGCGCTGAACGCCGCT
GCGGACGTGAAGCGGGAGGCCGAAATGGAGATGCTGGCCCGCGACAAGGC
GGCCGCACTGACCGCTGTCAAGGCGCGGCAACACGAGGAATTGCACGATC
TTAAGGAGTACTATAACAAGGCCCTCCACCGTCAGTGCCAGCTTCTAGAT
GCTGGCGAGGCCAAGCTGAATGAGCTGCGACGCAAGGCGAGGGAGGACCA
CAAATACCTTGCGCAGTTAGTGAAAAAACACGATCAGACCCTTGCCCAGC
CCTTGGCAAAAGCCACGAATACACTTGCCGGTTTAGAGAGTGCCCATGCT
TCCTACCAGGAGGAAAAGCGGTTGCTCCAGAGCCTTCGGGAGCAGGTGCA
AATGAAGGAGCGGAGGCTGCTAGCCCTGGAGAGGGAGAACGAGGAGCTCG
ACCTTCGCTTCTCAATCCTTTGTGAGGAGGCAGCGAGGCGGCGTCGTACT
CGACAAGCGACTATTCTTCAACGCCAGCAGCGGGCGGATTTGTTGGTTTT
GTTGCGGGAGCAGATTGCGCCGGCGGGAGTCGTGTGGGGGGCGTGA

Synonyms

Publications