jgi.p|Nanoce1779_2|602467, mRNA_8095 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|602467
Unique NamemRNA_8095
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length716
Alignment locationscaffold_25:137529..138244 -

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Properties
Property NameValue
TranscriptId602553
TrackFilteredModels2
ProteinId602467
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_25supercontigscaffold_25:137529..138244 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|602467gene_8095Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|602467mRNA_8095-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8095CDS_8095Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8095 ID=mRNA_8095|Name=jgi.p|Nanoce1779_2|602467|organism=Nannochloropsis oceanica|type=mRNA|length=716bp
CAGGGAGAGTAGGTGGATGGGGGAGGGGGAGATAAATCGGGAGAACGAGG
GACGGAGGGAAGGAGGGAAGGAGAAGGGGAAAGAGCACCGGCCGCATCCG
AATGAGTATCGACGCCGGCATGACAGCGACGATGACGAGGAGGGTGACGG
GGAGGATTGGAGAGGGAAGAAGAAGCACCGGTACGGGCTGCAGACAGCTG
GGGGAAGCAGCAGCAGCAGCAGTAGCAGTAGCAAAAGCAAGAAGGACGAT
GATGGCCGACCGAGGCATTTGGGACCGGACCCTGCAGTGCTGGCGGCCAA
GGAGAGGGAGCGATTGGAGGAGGAGAGGCAGAAGAGAGAGGCTCGGCGGA
AGCGGCCTTTAACAGAGGAGGAGAAGAAACAACGCTTGTTAGCCATGCGG
ACTGATGGGAATGTGAATGAGGAGCAGCGCCGGACAAGGGTGGAACAGGG
CAAGGATAGGGAGAAGGAGGAGACAGAGAAGGAGACGGGATTGACGGTGG
AATCGCGCAGAGGGGGGGAGGAGGAAGTGAAGCCGGAATTTTTGCAGAAA
ATGGGAGCACAGGTGTATATGGGGGGGGAGGAGACGTTGGTAGAGAGGAT
AGACAGGCTGAAGCACACGCGGCAGCGGAACCGTGGGGGAGAGGCAGGGT
TTTTGTAAGTGTGACAAAGAGGAAAGACAAAGCTGAAGCAAGCGAAGAAA
TAAAATAATAATGAGC
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protein sequence of jgi.p|Nanoce1779_2|602467

>mRNA_8095-protein ID=mRNA_8095-protein|Name=jgi.p|Nanoce1779_2|602467|organism=Nannochloropsis oceanica|type=polypeptide|length=214bp
MGEGEINRENEGRREGGKEKGKEHRPHPNEYRRRHDSDDDEEGDGEDWRG
KKKHRYGLQTAGGSSSSSSSSSKSKKDDDGRPRHLGPDPAVLAAKERERL
EEERQKREARRKRPLTEEEKKQRLLAMRTDGNVNEEQRRTRVEQGKDREK
EETEKETGLTVESRRGGEEEVKPEFLQKMGAQVYMGGEETLVERIDRLKH
TRQRNRGGEAGFL*
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mRNA from alignment at scaffold_25:137529..138244-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8095 ID=mRNA_8095|Name=jgi.p|Nanoce1779_2|602467|organism=Nannochloropsis oceanica|type=mRNA|length=716bp|location=Sequence derived from alignment at scaffold_25:137529..138244- (Nannochloropsis oceanica)
CAGGGAGAGTAGGTGGATGGGGGAGGGGGAGATAAATCGGGAGAACGAGG
GACGGAGGGAAGGAGGGAAGGAGAAGGGGAAAGAGCACCGGCCGCATCCG
AATGAGTATCGACGCCGGCATGACAGCGACGATGACGAGGAGGGTGACGG
GGAGGATTGGAGAGGGAAGAAGAAGCACCGGTACGGGCTGCAGACAGCTG
GGGGAAGCAGCAGCAGCAGCAGTAGCAGTAGCAAAAGCAAGAAGGACGAT
GATGGCCGACCGAGGCATTTGGGACCGGACCCTGCAGTGCTGGCGGCCAA
GGAGAGGGAGCGATTGGAGGAGGAGAGGCAGAAGAGAGAGGCTCGGCGGA
AGCGGCCTTTAACAGAGGAGGAGAAGAAACAACGCTTGTTAGCCATGCGG
ACTGATGGGAATGTGAATGAGGAGCAGCGCCGGACAAGGGTGGAACAGGG
CAAGGATAGGGAGAAGGAGGAGACAGAGAAGGAGACGGGATTGACGGTGG
AATCGCGCAGAGGGGGGGAGGAGGAAGTGAAGCCGGAATTTTTGCAGAAA
ATGGGAGCACAGGTGTATATGGGGGGGGAGGAGACGTTGGTAGAGAGGAT
AGACAGGCTGAAGCACACGCGGCAGCGGAACCGTGGGGGAGAGGCAGGGT
TTTTGTAAGTGTGACAAAGAGGAAAGACAAAGCTGAAGCAAGCGAAGAAA
TAAAATAATAATGAGC
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Coding sequence (CDS) from alignment at scaffold_25:137529..138244-

>mRNA_8095 ID=mRNA_8095|Name=jgi.p|Nanoce1779_2|602467|organism=Nannochloropsis oceanica|type=CDS|length=642bp|location=Sequence derived from alignment at scaffold_25:137529..138244- (Nannochloropsis oceanica)
ATGGGGGAGGGGGAGATAAATCGGGAGAACGAGGGACGGAGGGAAGGAGG
GAAGGAGAAGGGGAAAGAGCACCGGCCGCATCCGAATGAGTATCGACGCC
GGCATGACAGCGACGATGACGAGGAGGGTGACGGGGAGGATTGGAGAGGG
AAGAAGAAGCACCGGTACGGGCTGCAGACAGCTGGGGGAAGCAGCAGCAG
CAGCAGTAGCAGTAGCAAAAGCAAGAAGGACGATGATGGCCGACCGAGGC
ATTTGGGACCGGACCCTGCAGTGCTGGCGGCCAAGGAGAGGGAGCGATTG
GAGGAGGAGAGGCAGAAGAGAGAGGCTCGGCGGAAGCGGCCTTTAACAGA
GGAGGAGAAGAAACAACGCTTGTTAGCCATGCGGACTGATGGGAATGTGA
ATGAGGAGCAGCGCCGGACAAGGGTGGAACAGGGCAAGGATAGGGAGAAG
GAGGAGACAGAGAAGGAGACGGGATTGACGGTGGAATCGCGCAGAGGGGG
GGAGGAGGAAGTGAAGCCGGAATTTTTGCAGAAAATGGGAGCACAGGTGT
ATATGGGGGGGGAGGAGACGTTGGTAGAGAGGATAGACAGGCTGAAGCAC
ACGCGGCAGCGGAACCGTGGGGGAGAGGCAGGGTTTTTGTAA
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Synonyms
Publications