jgi.p|Nanoce1779_2|602455, mRNA_8092 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|602455
Unique NamemRNA_8092
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1057
Alignment locationscaffold_25:129355..130770 -

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Properties
Property NameValue
TranscriptId602541
TrackFilteredModels2
ProteinId602455
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_25supercontigscaffold_25:129355..130770 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|602455gene_8092Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|602455mRNA_8092-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8092CDS_8092Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8092 ID=mRNA_8092|Name=jgi.p|Nanoce1779_2|602455|organism=Nannochloropsis oceanica|type=mRNA|length=1057bp
GCCGAGGCGGAGGGATGCGGTTGGTCACGCCGAAGGGGCAAATGTCGGGA
AGCAATATGCCGCCGGCCATCACAGGGTTGCCTGCAAACATGCGCGCCAT
GTTTGAGCCTCGTCCACCTGTTGAATTCAACCGTCTCTCCACCAAGCCCC
CTCCCCAACCATACACGGGCATCAGTCAATACCCCCCCCCCCCCCCCCGC
GAGAAATACATTTCCTATGCCGAACGAAAAGCCGCCGAAAGAGCAGCTTT
GATGAAGGTCCACGCGGAGAAGGTCGAGTTGGAGAAAGAGGATTGGGACC
CGAAGAAGGATAAGAAAGCCACTGAGGATCCATACAGGACATTGATGGTT
GCTAGGTTATCATTTGACACGACTGAGAAGAAATTACGCAGAGAATTTGA
GCAGTATGGCCCGATTGAGAGCCTTAGAGTGGTGATGGATGGTGAGGGCA
AGCCAAGAGGGTATGCCTTTATTGAGTTCGAAAAGGAGGGGGACATGAAG
AATGCATATAAGCGCGCGGATGGGAAGAAGATTGACGGGAGGCGGGTCCT
GGTTGATGTGGAGAGGGGGAGGACGGTGAAGGGATGGGTGCCTCGGAGGC
TTGGTGGTGGCTTGGGCGGGACGAGAAAGGGCCCCGGGGAGGAGAACACG
GGACGAAGCGCAGGAGGGAGTGCGCGGGAGGAGATGAGCCGGGGAGGAGG
GAGCGGAAGAGGACGAAGTCGCAGTCCAGAGAGGCGGATGGACAGGGAGA
GTCGTGATCGGGGTCATCGTGGGGATAGAGGAGATAGGGGGGGGGATAGA
GACAGAGGTGACAGGGGGCGACGCTCTCGCAGTCGATCGCCTCCGCGTGG
ACGAAGGGATGATCGTGGCTGGGACCGTGACCGAGGAGATAGGAGGGATA
GAGGGGATAAGCGGAGGCGAAGCCGTAGCAGTGATAATCGATACGGGCCT
GCAAGTGATGGCGATAGCCGATATGGGCCCAGTGGAGGAGATAAACGAAG
GCGGTAGCTTTGAGAGGTGTGCGTGTCTAGTGGTGGTGGTGGTTGGGTGT
GGGAGGG
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protein sequence of jgi.p|Nanoce1779_2|602455

>mRNA_8092-protein ID=mRNA_8092-protein|Name=jgi.p|Nanoce1779_2|602455|organism=Nannochloropsis oceanica|type=polypeptide|length=331bp
MRLVTPKGQMSGSNMPPAITGLPANMRAMFEPRPPVEFNRLSTKPPPQPY
TGISQYPPPPPREKYISYAERKAAERAALMKVHAEKVELEKEDWDPKKDK
KATEDPYRTLMVARLSFDTTEKKLRREFEQYGPIESLRVVMDGEGKPRGY
AFIEFEKEGDMKNAYKRADGKKIDGRRVLVDVERGRTVKGWVPRRLGGGL
GGTRKGPGEENTGRSAGGSAREEMSRGGGSGRGRSRSPERRMDRESRDRG
HRGDRGDRGGDRDRGDRGRRSRSRSPPRGRRDDRGWDRDRGDRRDRGDKR
RRSRSSDNRYGPASDGDSRYGPSGGDKRRR*
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mRNA from alignment at scaffold_25:129355..130770-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8092 ID=mRNA_8092|Name=jgi.p|Nanoce1779_2|602455|organism=Nannochloropsis oceanica|type=mRNA|length=1416bp|location=Sequence derived from alignment at scaffold_25:129355..130770- (Nannochloropsis oceanica)
GCCGAGGCGGAGGGATGCGGTTGGTCACGCCGAAGGGGCAAATGTCGGGA
AGCAATATGCCGCCGGCCATCACAGGGTTGCCTGCAAGTAAGTGTTAGAC
GTGTTTTGTGTTGCACTTTGATGCTACGCTTGTGTATATAGAGGAAGAAG
GAGAGAGAGTGAGCGGAGGAGAGAAGAGCGGCAGGCCGAACAGAAAGAGT
GTGAGAAGGATTGCTGCAGTATGTCTGGCATGTAGATGTATGTTAAGTAG
GCTACGACAATGAGCGCACGTGACTGATTGGGATGGTCAACAGAGAAGCT
CGTGTGCGGATGGATACACTTCCAGGTGCTTTGCTCCGTCTTTTTATTTC
CCCCTCCTTCCCTACTGCTCGACCCCAACCCCGTAGCTCACCGTCCCCTC
CCTCTCTCTTACTTTATACCTACGTAGACATGCGCGCCATGTTTGAGCCT
CGTCCACCTGTTGAATTCAACCGTCTCTCCACCAAGCCCCCTCCCCAACC
ATACACGGGCATCAGTCAATACGTCGGCCTCTTCGAGACAGCCCCCCCCC
CCCCCCCGCGAGAAATACATTTCCTATGCCGAACGAAAAGCCGCCGAAAG
AGCAGCTTTGATGAAGGTCCACGCGGAGAAGGTCGAGTTGGAGAAAGAGG
ATTGGGACCCGAAGAAGGATAAGAAAGCCACTGAGGATCCATACAGGACA
TTGATGGTTGCTAGGTTATCATTTGACACGACTGAGAAGAAATTACGCAG
AGAATTTGAGCAGTATGGCCCGATTGAGAGCCTTAGAGTGGTGATGGATG
GTGAGGGCAAGCCAAGAGGGTATGCCTTTATTGAGTTCGAAAAGGAGGGG
GACATGAAGAATGCATATAAGCGCGCGGATGGGAAGAAGATTGACGGGAG
GCGGGTCCTGGTTGATGTGGAGAGGGGGAGGACGGTGAAGGGATGGGTGC
CTCGGAGGCTTGGTGGTGGCTTGGGCGGGACGAGAAAGGGCCCCGGGGAG
GAGAACACGGGACGAAGCGCAGGAGGGAGTGCGCGGGAGGAGATGAGCCG
GGGAGGAGGGAGCGGAAGAGGACGAAGTCGCAGTCCAGAGAGGCGGATGG
ACAGGGAGAGTCGTGATCGGGGTCATCGTGGGGATAGAGGAGATAGGGGG
GGGGATAGAGACAGAGGTGACAGGGGGCGACGCTCTCGCAGTCGATCGCC
TCCGCGTGGACGAAGGGATGATCGTGGCTGGGACCGTGACCGAGGAGATA
GGAGGGATAGAGGGGATAAGCGGAGGCGAAGCCGTAGCAGTGATAATCGA
TACGGGCCTGCAAGTGATGGCGATAGCCGATATGGGCCCAGTGGAGGAGA
TAAACGAAGGCGGTAGCTTTGAGAGGTGTGCGTGTCTAGTGGTGGTGGTG
GTTGGGTGTGGGAGGG
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Coding sequence (CDS) from alignment at scaffold_25:129355..130770-

>mRNA_8092 ID=mRNA_8092|Name=jgi.p|Nanoce1779_2|602455|organism=Nannochloropsis oceanica|type=CDS|length=2979bp|location=Sequence derived from alignment at scaffold_25:129355..130770- (Nannochloropsis oceanica)
CCCCCCCCCCCCCCCCGCGAGAAATACATTTCCTATGCCGAACGAAAAGC
CGCCGAAAGAGCAGCTTTGATGAAGGTCCACGCGGAGAAGGTCGAGTTGG
AGAAAGAGGATTGGGACCCGAAGAAGGATAAGAAAGCCACTGAGGATCCA
TACAGGACATTGATGGTTGCTAGGTTATCATTTGACACGACTGAGAAGAA
ATTACGCAGAGAATTTGAGCAGTATGGCCCGATTGAGAGCCTTAGAGTGG
TGATGGATGGTGAGGGCAAGCCAAGAGGGTATGCCTTTATTGAGTTCGAA
AAGGAGGGGGACATGAAGAATGCATATAAGCGCGCGGATGGGAAGAAGAT
TGACGGGAGGCGGGTCCTGGTTGATGTGGAGAGGGGGAGGACGGTGAAGG
GATGGGTGCCTCGGAGGCTTGGTGGTGGCTTGGGCGGGACGAGAAAGGGC
CCCGGGGAGGAGAACACGGGACGAAGCGCAGGAGGGAGTGCGCGGGAGGA
GATGAGCCGGGGAGGAGGGAGCGGAAGAGGACGAAGTCGCAGTCCAGAGA
GGCGGATGGACAGGGAGAGTCGTGATCGGGGTCATCGTGGGGATAGAGGA
GATAGGGGGGGGGATAGAGACAGAGGTGACAGGGGGCGACGCTCTCGCAG
TCGATCGCCTCCGCGTGGACGAAGGGATGATCGTGGCTGGGACCGTGACC
GAGGAGATAGGAGGGATAGAGGGGATAAGCGGAGGCGAAGCCGTAGCAGT
GATAATCGATACGGGCCTGCAAGTGATGGCGATAGCCGATATGGGCCCAG
TGGAGGAGATAAACGAAGGCGGTAGACATGCGCGCCATGTTTGAGCCTCG
TCCACCTGTTGAATTCAACCGTCTCTCCACCAAGCCCCCTCCCCAACCAT
ACACGGGCATCAGTCAATACATGCGGTTGGTCACGCCGAAGGGGCAAATG
TCGGGAAGCAATATGCCGCCGGCCATCACAGGGTTGCCTGCAACCCCCCC
CCCCCCCCCGCGAGAAATACATTTCCTATGCCGAACGAAAAGCCGCCGAA
AGAGCAGCTTTGATGAAGGTCCACGCGGAGAAGGTCGAGTTGGAGAAAGA
GGATTGGGACCCGAAGAAGGATAAGAAAGCCACTGAGGATCCATACAGGA
CATTGATGGTTGCTAGGTTATCATTTGACACGACTGAGAAGAAATTACGC
AGAGAATTTGAGCAGTATGGCCCGATTGAGAGCCTTAGAGTGGTGATGGA
TGGTGAGGGCAAGCCAAGAGGGTATGCCTTTATTGAGTTCGAAAAGGAGG
GGGACATGAAGAATGCATATAAGCGCGCGGATGGGAAGAAGATTGACGGG
AGGCGGGTCCTGGTTGATGTGGAGAGGGGGAGGACGGTGAAGGGATGGGT
GCCTCGGAGGCTTGGTGGTGGCTTGGGCGGGACGAGAAAGGGCCCCGGGG
AGGAGAACACGGGACGAAGCGCAGGAGGGAGTGCGCGGGAGGAGATGAGC
CGGGGAGGAGGGAGCGGAAGAGGACGAAGTCGCAGTCCAGAGAGGCGGAT
GGACAGGGAGAGTCGTGATCGGGGTCATCGTGGGGATAGAGGAGATAGGG
GGGGGGATAGAGACAGAGGTGACAGGGGGCGACGCTCTCGCAGTCGATCG
CCTCCGCGTGGACGAAGGGATGATCGTGGCTGGGACCGTGACCGAGGAGA
TAGGAGGGATAGAGGGGATAAGCGGAGGCGAAGCCGTAGCAGTGATAATC
GATACGGGCCTGCAAGTGATGGCGATAGCCGATATGGGCCCAGTGGAGGA
GATAAACGAAGGCGGTAGACATGCGCGCCATGTTTGAGCCTCGTCCACCT
GTTGAATTCAACCGTCTCTCCACCAAGCCCCCTCCCCAACCATACACGGG
CATCAGTCAATACATGCGGTTGGTCACGCCGAAGGGGCAAATGTCGGGAA
GCAATATGCCGCCGGCCATCACAGGGTTGCCTGCAACCCCCCCCCCCCCC
CCGCGAGAAATACATTTCCTATGCCGAACGAAAAGCCGCCGAAAGAGCAG
CTTTGATGAAGGTCCACGCGGAGAAGGTCGAGTTGGAGAAAGAGGATTGG
GACCCGAAGAAGGATAAGAAAGCCACTGAGGATCCATACAGGACATTGAT
GGTTGCTAGGTTATCATTTGACACGACTGAGAAGAAATTACGCAGAGAAT
TTGAGCAGTATGGCCCGATTGAGAGCCTTAGAGTGGTGATGGATGGTGAG
GGCAAGCCAAGAGGGTATGCCTTTATTGAGTTCGAAAAGGAGGGGGACAT
GAAGAATGCATATAAGCGCGCGGATGGGAAGAAGATTGACGGGAGGCGGG
TCCTGGTTGATGTGGAGAGGGGGAGGACGGTGAAGGGATGGGTGCCTCGG
AGGCTTGGTGGTGGCTTGGGCGGGACGAGAAAGGGCCCCGGGGAGGAGAA
CACGGGACGAAGCGCAGGAGGGAGTGCGCGGGAGGAGATGAGCCGGGGAG
GAGGGAGCGGAAGAGGACGAAGTCGCAGTCCAGAGAGGCGGATGGACAGG
GAGAGTCGTGATCGGGGTCATCGTGGGGATAGAGGAGATAGGGGGGGGGA
TAGAGACAGAGGTGACAGGGGGCGACGCTCTCGCAGTCGATCGCCTCCGC
GTGGACGAAGGGATGATCGTGGCTGGGACCGTGACCGAGGAGATAGGAGG
GATAGAGGGGATAAGCGGAGGCGAAGCCGTAGCAGTGATAATCGATACGG
GCCTGCAAGTGATGGCGATAGCCGATATGGGCCCAGTGGAGGAGATAAAC
GAAGGCGGTAGACATGCGCGCCATGTTTGAGCCTCGTCCACCTGTTGAAT
TCAACCGTCTCTCCACCAAGCCCCCTCCCCAACCATACACGGGCATCAGT
CAATACATGCGGTTGGTCACGCCGAAGGGGCAAATGTCGGGAAGCAATAT
GCCGCCGGCCATCACAGGGTTGCCTGCAA
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Synonyms
Publications