jgi.p|Nanoce1779_2|602447, mRNA_8090 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|602447
Unique NamemRNA_8090
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length536
Alignment locationscaffold_25:125084..126157 -

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Properties
Property NameValue
TranscriptId602533
TrackFilteredModels2
ProteinId602447
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_25supercontigscaffold_25:125084..126157 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|602447gene_8090Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|602447mRNA_8090-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8090CDS_8090Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8090 ID=mRNA_8090|Name=jgi.p|Nanoce1779_2|602447|organism=Nannochloropsis oceanica|type=mRNA|length=536bp
AGGAGCCATGAAGGAGCCCACGGCGTACGAGAGGAACATGGAGACCCTCA
CCACTTTCCTCCTGCCCTTTGTCGTGACCATTTACCTGGGCCTGGTCTTG
AAGAAGTATTCCCTAGAAGGCTACACTGACTTAGTCACTAGTGATTATCT
CCTGCTTGGGTTTAAGGACATTGAGGCATTGCGACGGCATTTGGTCGATA
ATCTGATCGGCTCTTGCGTGTGGGGCCTGACCTTCATGTACATCCGCAAG
ATGGGCAACCCTGAGATTCGGCACACGGCCTGGAAGAACACTCAGGACGG
GTACTTTGCCACACTGACGACATTCATCACAGGCTTGCTAAAGGCCGTAT
GCAACAATTTTGCCAACAAGCTTTGAGGCAGGGAAGGGGAAAAAGAAAAA
AAGGAGAGAAGGAGGGAAAGTGGGGGAGAATTTTTACGGTGTATGTAAGG
GGAAGGAGAGTTGACGGGGGACTCAGATATTTCATGAAGAAGGAGAAGAA
AGCAAATGAATGATGGTAACGACGATGGTAACGACA
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protein sequence of jgi.p|Nanoce1779_2|602447

>mRNA_8090-protein ID=mRNA_8090-protein|Name=jgi.p|Nanoce1779_2|602447|organism=Nannochloropsis oceanica|type=polypeptide|length=123bp
MKEPTAYERNMETLTTFLLPFVVTIYLGLVLKKYSLEGYTDLVTSDYLLL
GFKDIEALRRHLVDNLIGSCVWGLTFMYIRKMGNPEIRHTAWKNTQDGYF
ATLTTFITGLLKAVCNNFANKL*
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mRNA from alignment at scaffold_25:125084..126157-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8090 ID=mRNA_8090|Name=jgi.p|Nanoce1779_2|602447|organism=Nannochloropsis oceanica|type=mRNA|length=1074bp|location=Sequence derived from alignment at scaffold_25:125084..126157- (Nannochloropsis oceanica)
AGGAGCCATGAAGGAGCCCACGGCGTACGAGAGGAACATGGAGACCCTCA
CCACTTTCCTCCTGCCCTTTGTCGTGACCATTTACCTGGGCCTGGTCTTG
AAGAAGTATTCCCTAGAAGGCTACACTGACTTAGTCACTAGTGATTATCT
CCTGCTTGGTACGTGCTGGTGGTGATGGAGTTTATGGACGGAGCGAAGGA
AGGAAGGGAGAGCGGGAGAGAGTTGCAAGAGTTCGCGGGGGAGTACGGAT
AATGAGAGTAAATGTTGTCGCTACGCCTGGTACTGCGCCCGGGTGCATGC
GCATGTGTGTTTTCATGTGCGTTTAGTTACTAAGTATCTGCTTTGTGGCT
TAAGAAGAGGAGGCTCATTGAATGGATGAGATCAGTCACTTGACTCAAAA
AAGGGAGAAACACCTCCGTGGTAGTACCCGTTGCATGGTCTCTTCCCCAT
AGGACTACTTGATCTTCGATCTTGCTTGCCAATCCCCCACTCCCTACCTC
CCTAACTTGTTTTCATAACGACAGGGTTTAAGGACATTGAGGCATTGCGA
CGGCATTTGGTCGATAATCTGATCGGCTCTTGCGTGTGGGGCCTGACCTT
CATGTACATCCGCAAGATGGGCAACCCTGAGATTCGGCACACGGCCTGGA
AGAACACTCAGGTAAGGGGAGAGCAAGGATGGGGATGAGCAAGGGAAATG
CCATGTAATCACTTTCCTGAAATTTGCTTTGTTGTCTGCATTCTTTTTCC
ACCGTGCCTCCCTCCTCTTCCCCCGGTGCGTCCAAGTGAGTCATTCAAAT
CACAGACTCAACAGAAAATACATATATAAACAGGACGGGTACTTTGCCAC
ACTGACGACATTCATCACAGGCTTGCTAAAGGCCGTATGCAACAATTTTG
CCAACAAGCTTTGAGGCAGGGAAGGGGAAAAAGAAAAAAAGGAGAGAAGG
AGGGAAAGTGGGGGAGAATTTTTACGGTGTATGTAAGGGGAAGGAGAGTT
GACGGGGGACTCAGATATTTCATGAAGAAGGAGAAGAAAGCAAATGAATG
ATGGTAACGACGATGGTAACGACA
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Coding sequence (CDS) from alignment at scaffold_25:125084..126157-

>mRNA_8090 ID=mRNA_8090|Name=jgi.p|Nanoce1779_2|602447|organism=Nannochloropsis oceanica|type=CDS|length=1107bp|location=Sequence derived from alignment at scaffold_25:125084..126157- (Nannochloropsis oceanica)
GACGGGTACTTTGCCACACTGACGACATTCATCACAGGCTTGCTAAAGGC
CGTATGCAACAATTTTGCCAACAAGCTTTGAGGTTTAAGGACATTGAGGC
ATTGCGACGGCATTTGGTCGATAATCTGATCGGCTCTTGCGTGTGGGGCC
TGACCTTCATGTACATCCGCAAGATGGGCAACCCTGAGATTCGGCACACG
GCCTGGAAGAACACTCAGATGAAGGAGCCCACGGCGTACGAGAGGAACAT
GGAGACCCTCACCACTTTCCTCCTGCCCTTTGTCGTGACCATTTACCTGG
GCCTGGTCTTGAAGAAGTATTCCCTAGAAGGCTACACTGACTTAGTCACT
AGTGATTATCTCCTGCTTGGACGGGTACTTTGCCACACTGACGACATTCA
TCACAGGCTTGCTAAAGGCCGTATGCAACAATTTTGCCAACAAGCTTTGA
GGTTTAAGGACATTGAGGCATTGCGACGGCATTTGGTCGATAATCTGATC
GGCTCTTGCGTGTGGGGCCTGACCTTCATGTACATCCGCAAGATGGGCAA
CCCTGAGATTCGGCACACGGCCTGGAAGAACACTCAGATGAAGGAGCCCA
CGGCGTACGAGAGGAACATGGAGACCCTCACCACTTTCCTCCTGCCCTTT
GTCGTGACCATTTACCTGGGCCTGGTCTTGAAGAAGTATTCCCTAGAAGG
CTACACTGACTTAGTCACTAGTGATTATCTCCTGCTTGGACGGGTACTTT
GCCACACTGACGACATTCATCACAGGCTTGCTAAAGGCCGTATGCAACAA
TTTTGCCAACAAGCTTTGAGGTTTAAGGACATTGAGGCATTGCGACGGCA
TTTGGTCGATAATCTGATCGGCTCTTGCGTGTGGGGCCTGACCTTCATGT
ACATCCGCAAGATGGGCAACCCTGAGATTCGGCACACGGCCTGGAAGAAC
ACTCAGATGAAGGAGCCCACGGCGTACGAGAGGAACATGGAGACCCTCAC
CACTTTCCTCCTGCCCTTTGTCGTGACCATTTACCTGGGCCTGGTCTTGA
AGAAGTATTCCCTAGAAGGCTACACTGACTTAGTCACTAGTGATTATCTC
CTGCTTG
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Synonyms
Publications