jgi.p|Nanoce1779_2|536396, mRNA_809 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|536396
Unique Name	mRNA_809
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1620
Alignment location	scaffold_2:480941..483196 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	536482
Track	FilteredModels2
ProteinId	536396

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_2	supercontig	scaffold_2:480941..483196 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|536396	gene_809	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|536396	mRNA_809-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_809	CDS_809	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_2:480941..483196+
coding sequence from alignment at scaffold_2:480941..483196+

mRNA sequence

>mRNA_809 ID=mRNA_809|Name=jgi.p|Nanoce1779_2|536396|organism=Nannochloropsis oceanica|type=mRNA|length=1620bp
CAGGTTGGTGGTGGGAAGACCACAGCCGCCTGCGCAGCTCACAACCCCGC
TTCTGCACAGCTCACGGATCTCTCCAACCCAGGCGGCACCATCACAGGCA
AAACCATGGGTGGCGCCCTTTCCCAACTCCTCCGTTCCACCTGGCTAGCC
AATCTCATGTGGATGAGCGGTAGCATCCTCGCCCTCGGCCTCGGCGCACT
CTATTACTTCCAAGACCAACTCCTCTACCATCCCTCCATTCCCGGCATGC
CCCAAACTCCTCGGGAGAACCCTCCTGGGTATCGCTCCCCTGCCGACCAC
GGTATTCATGACTACGAAGAGCATTTCATCAAGACCGACGACGGTGCAAC
AATACACGCCTGGCTCCTTCTCCACCCTGACTCTCTCTCTCTTCCCACGG
TCGTTTATTTCCACGGCAACGCGGGTAATATGGGATTTCGCCTCCCGCAT
GGCAGCAATCTCTTCAAGCAATGCCGTGTCAATGTCCTATTGATGGACTA
TCGGGGTTATGGTTCAAGCAAAGGCATTCCTAGTGAGCATGGTCTGCTCT
CTGATGCCCGCGCAGTGCTGGCCACCCTACAAGCCCACCCTCGAGTCGCC
TCAGATAGAATTGTTCTGTATGGCAAATCCCTAGGAGGGGCTGTCGCACT
CGCAGTCACAGAAGTAAAACCTGACGACGTTCTGGCTTTGGTCCTGGAAA
ATACGTTTTTGAGCATCCCTGCCATGGTGGACGTATTAATGCCTCTTGTC
AAAGTGTTCAAAGGTTTCATTCTGCGGATCGGGTGGCACAGCGACAGACG
CGTTGCCTTGCTGTCGCAGCCGATGCTTTTCATGTCCGGCTTGAACGACG
AATTGGTCCCTCCGGCGCACATGCGTGAGTTGAAAGAGCGGGCGACGAGT
AGTGTGTGGACGCAGCTGTACACGGTGGCAGATGGGACGCATAATGACAC
GTGGCATAAGGGAGGAATAGCGTATTATCGCACTTATCGAGATTTCATAG
GCAGGGTCATGGAGCTTCTGGAAGAGGGAAAGGTGGGGAGGAGGAGGAAA
GAAGGGGGGAAAGGTGCATGTGCAGAAACGGGACTGAGGGGCAAGGTGGA
GGAGCGGAAGGTGGTGGGAGGATCAGTTCCAATCGTACCGTCGAACAGCA
GCAGCAGCAGCAGAAGTGACGCGAAGAAAAATGAGTAAACTAGCGGTTGT
AACAGCGAGAAGCGGACAAAAAATAAGAGAGCAATCAGATGTGAATTTAC
AATCAACGTCAGCAGCAGTGACCAGGAAAACAGCAGCAGCAGCAGCAGCG
GCAACAGCAGCAGCAAAGATGATTGTAATGATGCTTGAAAATATCCTCTC
CAAAAATACTGTACAAACTTAGTTGAAACACAAAAGCTAAGCCCAAAAGA
CATTATTGTAGAAATAAGATGACACTCGATTCTTCTAGACAGATGTGCAT
TTACATTTCCTTAGTTTTTCATGCCATTTGCATTCCCTGTAGAACGAAAG
AAATGTTCCAGTGGTTTCGCTACGGGCTGTGATGCCCTCTTCTTTCCTCC
TCCCTCCCTTCCTCCCCCGGCCCCATTCCGCTTCCCCTTCTTGTAAGCCA
CTGTGGATTGCGGGGGCGCG

protein sequence of jgi.p|Nanoce1779_2|536396

>mRNA_809-protein ID=mRNA_809-protein|Name=jgi.p|Nanoce1779_2|536396|organism=Nannochloropsis oceanica|type=polypeptide|length=361bp
MGGALSQLLRSTWLANLMWMSGSILALGLGALYYFQDQLLYHPSIPGMPQ
TPRENPPGYRSPADHGIHDYEEHFIKTDDGATIHAWLLLHPDSLSLPTVV
YFHGNAGNMGFRLPHGSNLFKQCRVNVLLMDYRGYGSSKGIPSEHGLLSD
ARAVLATLQAHPRVASDRIVLYGKSLGGAVALAVTEVKPDDVLALVLENT
FLSIPAMVDVLMPLVKVFKGFILRIGWHSDRRVALLSQPMLFMSGLNDEL
VPPAHMRELKERATSSVWTQLYTVADGTHNDTWHKGGIAYYRTYRDFIGR
VMELLEEGKVGRRRKEGGKGACAETGLRGKVEERKVVGGSVPIVPSNSSS
SSRSDAKKNE*

mRNA from alignment at scaffold_2:480941..483196+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_809 ID=mRNA_809|Name=jgi.p|Nanoce1779_2|536396|organism=Nannochloropsis oceanica|type=mRNA|length=2256bp|location=Sequence derived from alignment at scaffold_2:480941..483196+ (Nannochloropsis oceanica)
CAGGTTGGTGGTGGGAAGACCACAGCCGCCTGCGCAGCTCACAACCCCGC
TTCTGCACAGCTCACGGATCTCTCCAACCCAGGCGGCACCATCACAGGTA
CGTAGCGAGAAACCAGCCATCCGATCCTCTCTCTCTCCATGGGCTGGGCT
ATCTGCCTCGTTACTCTCTTTTGTGTGTGTGGCGGTGCCGGCGGCGTTGT
CGCTTTGGCACTGACGCGATCTATTTCACCAGTCAACTAAGCCCCTGTGT
GATGTGATGTATGCGAGCACGCCGTGAAGGGTGGTTGGGCGCAGTGGATA
CGAGAGCACCTCTGCTCCAAGCTGGATCCCCCTCCCTACCTCCCTTTATT
CTTCCCTCCCTGCCCTCCCTCCCAACCTCCGTGACCCTTTTCTTCCTCAA
AATGACAAGAGCTAAGGATTAAAATATATGCATTGGAGCTGGACTGAAAG
TGTGCTGTCTTACGAGGCAATGCACGTGATGCTCTTTAGTAATTTTCAAC
ATGAAGCTTCTTGTATTGAGAATCTATTTATCTGGCCATGATGCAGATGG
TTGCGTCGGACGGGCGAGGAAAGGGTGGGCGAGTGTGTCATGTTGTCCTG
GAATATCGTGCCGTTGCCTACGCCTTTCCTTATCTTATGCTCCCTTGTGT
CACCCTCGCCTTCTTCTCTTTTTCTTCCTCCAAACCACCCACATTCCCTC
GTCCCCACCACCACCATACCTCGTCTCAAATAGGCAAAACCATGGGTGGC
GCCCTTTCCCAACTCCTCCGTTCCACCTGGCTAGCCAATCTCATGTGGAT
GAGCGGTAGCATCCTCGCCCTCGGCCTCGGCGCACTCTATTACTTCCAAG
ACCAACTCCTCTACCATCCCTCCATTCCCGGCATGCCCCAAACTCCTCGG
GAGAACCCTCCTGGGTATCGCTCCCCTGCCGACCACGGTATTCATGACTA
CGAAGAGCATTTCATCAAGACCGACGACGGTGCAACAATACACGCCTGGC
TCCTTCTCCACCCTGACTCTCTCTCTCTTCCCACGGTCGTTTATTTCCAC
GGCAACGCGGGTAATATGGGATTTCGCCTCCCGCATGGCAGCAATCTCTT
CAAGCAATGCCGTGTCAATGTCCTATTGATGGACTATCGGGGTTATGGTT
CAAGCAAAGGCATTCCTAGTGAGCATGGTCTGCTCTCTGATGCCCGCGCA
GTGCTGGCCACCCTACAAGCCCACCCTCGAGTCGCCTCAGATAGAATTGT
TCTGTATGGCAAATCCCTAGGAGGGGCTGTCGCACTCGCAGTCACAGAAG
TAAAACCTGACGACGTTCTGGCTTTGGTCCTGGAAAATACGTTTTTGAGC
ATCCCTGCCATGGTGGACGTATTAATGCCTCTTGTCAAAGTGTTCAAAGG
TTTCATTCTGCGGATCGGGTGGCACAGCGACAGACGCGTTGCCTTGCTGT
CGCAGCCGATGCTTTTCATGTCCGGCTTGAACGACGAATTGGTCCCTCCG
GCGCACATGCGTGAGTTGAAAGAGCGGGCGACGAGTAGTGTGTGGACGCA
GCTGTACACGGTGGCAGATGGGACGCATAATGACACGTGGCATAAGGGAG
GAATAGCGTATTATCGCACTTATCGAGATTTCATAGGCAGGGTCATGGAG
CTTCTGGAAGAGGGAAAGGTGGGGAGGAGGAGGAAAGAAGGGGGGAAAGG
TGCATGTGCAGAAACGGGACTGAGGGGCAAGGTGGAGGAGCGGAAGGTGG
TGGGAGGATCAGTTCCAATCGTACCGTCGAACAGCAGCAGCAGCAGCAGA
AGTGACGCGAAGAAAAATGAGTAAACTAGCGGTTGTAACAGCGAGAAGCG
GACAAAAAATAAGAGAGCAATCAGATGTGAATTTACAATCAACGTCAGCA
GCAGTGACCAGGAAAACAGCAGCAGCAGCAGCAGCGGCAACAGCAGCAGC
AAAGATGATTGTAATGATGCTTGAAAATATCCTCTCCAAAAATACTGTAC
AAACTTAGTTGAAACACAAAAGCTAAGCCCAAAAGACATTATTGTAGAAA
TAAGATGACACTCGATTCTTCTAGACAGATGTGCATTTACATTTCCTTAG
TTTTTCATGCCATTTGCATTCCCTGTAGAACGAAAGAAATGTTCCAGTGG
TTTCGCTACGGGCTGTGATGCCCTCTTCTTTCCTCCTCCCTCCCTTCCTC
CCCCGGCCCCATTCCGCTTCCCCTTCTTGTAAGCCACTGTGGATTGCGGG
GGCGCG

Coding sequence (CDS) from alignment at scaffold_2:480941..483196+

>mRNA_809 ID=mRNA_809|Name=jgi.p|Nanoce1779_2|536396|organism=Nannochloropsis oceanica|type=CDS|length=1083bp|location=Sequence derived from alignment at scaffold_2:480941..483196+ (Nannochloropsis oceanica)
ATGGGTGGCGCCCTTTCCCAACTCCTCCGTTCCACCTGGCTAGCCAATCT
CATGTGGATGAGCGGTAGCATCCTCGCCCTCGGCCTCGGCGCACTCTATT
ACTTCCAAGACCAACTCCTCTACCATCCCTCCATTCCCGGCATGCCCCAA
ACTCCTCGGGAGAACCCTCCTGGGTATCGCTCCCCTGCCGACCACGGTAT
TCATGACTACGAAGAGCATTTCATCAAGACCGACGACGGTGCAACAATAC
ACGCCTGGCTCCTTCTCCACCCTGACTCTCTCTCTCTTCCCACGGTCGTT
TATTTCCACGGCAACGCGGGTAATATGGGATTTCGCCTCCCGCATGGCAG
CAATCTCTTCAAGCAATGCCGTGTCAATGTCCTATTGATGGACTATCGGG
GTTATGGTTCAAGCAAAGGCATTCCTAGTGAGCATGGTCTGCTCTCTGAT
GCCCGCGCAGTGCTGGCCACCCTACAAGCCCACCCTCGAGTCGCCTCAGA
TAGAATTGTTCTGTATGGCAAATCCCTAGGAGGGGCTGTCGCACTCGCAG
TCACAGAAGTAAAACCTGACGACGTTCTGGCTTTGGTCCTGGAAAATACG
TTTTTGAGCATCCCTGCCATGGTGGACGTATTAATGCCTCTTGTCAAAGT
GTTCAAAGGTTTCATTCTGCGGATCGGGTGGCACAGCGACAGACGCGTTG
CCTTGCTGTCGCAGCCGATGCTTTTCATGTCCGGCTTGAACGACGAATTG
GTCCCTCCGGCGCACATGCGTGAGTTGAAAGAGCGGGCGACGAGTAGTGT
GTGGACGCAGCTGTACACGGTGGCAGATGGGACGCATAATGACACGTGGC
ATAAGGGAGGAATAGCGTATTATCGCACTTATCGAGATTTCATAGGCAGG
GTCATGGAGCTTCTGGAAGAGGGAAAGGTGGGGAGGAGGAGGAAAGAAGG
GGGGAAAGGTGCATGTGCAGAAACGGGACTGAGGGGCAAGGTGGAGGAGC
GGAAGGTGGTGGGAGGATCAGTTCCAATCGTACCGTCGAACAGCAGCAGC
AGCAGCAGAAGTGACGCGAAGAAAAATGAGTAA

Synonyms

Publications