jgi.p|Nanoce1779_2|568517, mRNA_8089 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|568517
Unique Name	mRNA_8089
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2226
Alignment location	scaffold_25:122747..124972 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	568603
Track	FilteredModels2
ProteinId	568517

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_25	supercontig	scaffold_25:122747..124972 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|568517	gene_8089	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|568517	mRNA_8089-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8089	CDS_8089	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_25:122747..124972+
coding sequence from alignment at scaffold_25:122747..124972+

mRNA sequence

>mRNA_8089 ID=mRNA_8089|Name=jgi.p|Nanoce1779_2|568517|organism=Nannochloropsis oceanica|type=mRNA|length=2226bp
ATGGAGCGCGTTCTGGAGCAGAAGGTACGCAAGGTCGTGGAGGGTCGCAC
CGACACGCCCGCCATGCTGGAAGCACTGCAAGCCATCGCCGCTTTTTATG
GGCACCGGGAGGGGGGCAACACGGCCGAGGCCCGCAAGTCCCTGCGGCAA
GATCTGGAGAAGCAAAACATGGTCCTGTGCGACCGCTTCTTGGAGTTGTT
CGAAGTGCTGCAAAAGCGGCTGGCGGTGTTGGACGCCCACACGGCCAACT
TAGAGGGTCATTGCCAGGGGATTCATGCCCGGATTGAGACGGCAGAAGAG
AGCATGAGTGCATTTCTCGCTCGGGCCCACGCCTTGAAAAAGCAACAAGC
AGACGCCGAGGCCAAAGCGGCGCAAATTACTTCTTTTCTGGACAGGTTTA
CCTTGTCGGACGCGGAAGTGGCCGCATTACGATTTGAGGCAGTGGATAAA
ATTATTGAGGGGGGACAGCGCCCCTTCTTTGCCGCCATGACACGCGTGCA
GGAAATCAGGGCAGGCTGTGGTGCCCTCGTAGGGTCACCACAGCAAAGCG
CAGGATTTGAGATGTTAGAAGCCTTGTCTGAGCATCAAGAGGCAGCTTTT
CGACGATTGCATTCGTGGATCCTGCAGCGGTGCGCGGGGTTGGAACGAGA
TGATGCTGCCGGAGATGTAGAGGAGAACGACGTGGCGTTGGGGTTGGGAT
TGAGGACGATGAGGGAACGCTCGGCGCTATTTGTTCATTGTCAAGAGTGC
TTATTGCAACGGAGAAAGGACGTGGTCCGACGGAGGTTTTTGCAGGCCCT
CTCAGGTGCTGGATTGGGTGGTAGTGGAGAAAGTGGGGGAAGGAGGGAGG
GGAGAAGCCTGAGTGGGAGTGGCGGACAGAGGCCAATTGAAATGCAGGCT
CATGACCCAGTGAGATATTTGAGTGATATCTTGGCGTGGCTTCATCAGAC
GGTTGCGTCGGAGAAGGAATTTCTGCAGAACTTGCTCGGGGCGGGGGCAG
GGGAGGGAGGGGACAAGGAGAAAGATGAGATAAGCGCGTCGTTGTCATCG
TCGTCGGGGAAGCAAGAAATGACGCAGCTAGAGATGTTGGCAGGAATCAT
GGAAGGCGTCGCACCGTTACTCAAGGCCCGCATCATGCATCTAGTGGAGC
CCAGAAGCTTCACCAACAGCAGTGTTAGCAGCAGCAACCAGCTTATCCTT
AGCTTCCGCCTACTGAATCTCCTGGCATTCTACGACGTGACCCTCCAGAC
TCTTGGCCTTGGCGGTAGCAGTAAGACTACTACCATTGACAGCAGCAGCG
GTACCACTCCCTCCTCCTCTGCGTTCGGGCAAGTCCTCAGGGACACACGT
GCCCAGGCTCATCACTTCTTCGAAGCCGGGCTGCGTCAACTGGGAGAGGC
CGCCATGGCCTCCCCCCCTGCCTATCCCATCGATTTGTCTGCTGCGGATC
TGACGAAGGATGCAGGGAGGCAGCTCACGGAAATTCTGTGGGTGCACGAG
TCGTCCTTGATCCCGACGGAGGAGTTGGGGTATGAGGTAGACGATGTGTT
GACAGCCCTGGTCGAGCCCGTGTTACGTGCGTGTAGGTTGGGTGCAGAGG
GGCTGGACCCATCGGATGCTGCTGTGTACATGTTGAACAATGCGGGGATG
TTGTATACGTGTTTGGTCGGGAGTAATAGTAGCAGCAGCAGCAGTGGTGG
TTGTGTAGGGAAGTGGGTGGAGCGATTGAAGGCGGAGATGGAGACCTGGT
TGGCCTTGTTGGTGAAGTATCAATCCGAGGCCGTGCTAGAAAGGACGGGA
CTTGGGCCACTGTTGGAGAGAGCAGTGGCAGTGGCTGCGTCTTCGTCGGG
GACCCTGTCGGCCACGGCGGGATTGGACGCAGGAACTGTAGGGGAGGTCA
TGAAGGGCTTCTATCAGGGTTTGTTCTCCTCGCCTCAATTCGAGAAATTG
GATGATCCGCGGATGAGGGCAAGAGCGAGGCAAAGGACGTCAAAGGTGAT
TGCGGAGGGGCACGAGACGGCGTACAAATTGTTCAGCAAGGGGGAAAATG
GATACCCGGAAGCGGGGAAGTTTTTGATTCACACGCCCGAGCAGGTTCGG
ATTCTATTGGACTGCGAGGAGGAGGAGGAGGAGGAGGAGGAGGGTATAGA
AAGGAGGAGTGAGGAGGAGGAGGAGGAAAGGGGGCTCACAATGAGGGTGA
ATGATGAATTTAAGCTTTGGAGGTAG

protein sequence of jgi.p|Nanoce1779_2|568517

>mRNA_8089-protein ID=mRNA_8089-protein|Name=jgi.p|Nanoce1779_2|568517|organism=Nannochloropsis oceanica|type=polypeptide|length=742bp
MERVLEQKVRKVVEGRTDTPAMLEALQAIAAFYGHREGGNTAEARKSLRQ
DLEKQNMVLCDRFLELFEVLQKRLAVLDAHTANLEGHCQGIHARIETAEE
SMSAFLARAHALKKQQADAEAKAAQITSFLDRFTLSDAEVAALRFEAVDK
IIEGGQRPFFAAMTRVQEIRAGCGALVGSPQQSAGFEMLEALSEHQEAAF
RRLHSWILQRCAGLERDDAAGDVEENDVALGLGLRTMRERSALFVHCQEC
LLQRRKDVVRRRFLQALSGAGLGGSGESGGRREGRSLSGSGGQRPIEMQA
HDPVRYLSDILAWLHQTVASEKEFLQNLLGAGAGEGGDKEKDEISASLSS
SSGKQEMTQLEMLAGIMEGVAPLLKARIMHLVEPRSFTNSSVSSSNQLIL
SFRLLNLLAFYDVTLQTLGLGGSSKTTTIDSSSGTTPSSSAFGQVLRDTR
AQAHHFFEAGLRQLGEAAMASPPAYPIDLSAADLTKDAGRQLTEILWVHE
SSLIPTEELGYEVDDVLTALVEPVLRACRLGAEGLDPSDAAVYMLNNAGM
LYTCLVGSNSSSSSSGGCVGKWVERLKAEMETWLALLVKYQSEAVLERTG
LGPLLERAVAVAASSSGTLSATAGLDAGTVGEVMKGFYQGLFSSPQFEKL
DDPRMRARARQRTSKVIAEGHETAYKLFSKGENGYPEAGKFLIHTPEQVR
ILLDCEEEEEEEEEGIERRSEEEEEERGLTMRVNDEFKLWR*

mRNA from alignment at scaffold_25:122747..124972+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8089 ID=mRNA_8089|Name=jgi.p|Nanoce1779_2|568517|organism=Nannochloropsis oceanica|type=mRNA|length=2226bp|location=Sequence derived from alignment at scaffold_25:122747..124972+ (Nannochloropsis oceanica)
ATGGAGCGCGTTCTGGAGCAGAAGGTACGCAAGGTCGTGGAGGGTCGCAC
CGACACGCCCGCCATGCTGGAAGCACTGCAAGCCATCGCCGCTTTTTATG
GGCACCGGGAGGGGGGCAACACGGCCGAGGCCCGCAAGTCCCTGCGGCAA
GATCTGGAGAAGCAAAACATGGTCCTGTGCGACCGCTTCTTGGAGTTGTT
CGAAGTGCTGCAAAAGCGGCTGGCGGTGTTGGACGCCCACACGGCCAACT
TAGAGGGTCATTGCCAGGGGATTCATGCCCGGATTGAGACGGCAGAAGAG
AGCATGAGTGCATTTCTCGCTCGGGCCCACGCCTTGAAAAAGCAACAAGC
AGACGCCGAGGCCAAAGCGGCGCAAATTACTTCTTTTCTGGACAGGTTTA
CCTTGTCGGACGCGGAAGTGGCCGCATTACGATTTGAGGCAGTGGATAAA
ATTATTGAGGGGGGACAGCGCCCCTTCTTTGCCGCCATGACACGCGTGCA
GGAAATCAGGGCAGGCTGTGGTGCCCTCGTAGGGTCACCACAGCAAAGCG
CAGGATTTGAGATGTTAGAAGCCTTGTCTGAGCATCAAGAGGCAGCTTTT
CGACGATTGCATTCGTGGATCCTGCAGCGGTGCGCGGGGTTGGAACGAGA
TGATGCTGCCGGAGATGTAGAGGAGAACGACGTGGCGTTGGGGTTGGGAT
TGAGGACGATGAGGGAACGCTCGGCGCTATTTGTTCATTGTCAAGAGTGC
TTATTGCAACGGAGAAAGGACGTGGTCCGACGGAGGTTTTTGCAGGCCCT
CTCAGGTGCTGGATTGGGTGGTAGTGGAGAAAGTGGGGGAAGGAGGGAGG
GGAGAAGCCTGAGTGGGAGTGGCGGACAGAGGCCAATTGAAATGCAGGCT
CATGACCCAGTGAGATATTTGAGTGATATCTTGGCGTGGCTTCATCAGAC
GGTTGCGTCGGAGAAGGAATTTCTGCAGAACTTGCTCGGGGCGGGGGCAG
GGGAGGGAGGGGACAAGGAGAAAGATGAGATAAGCGCGTCGTTGTCATCG
TCGTCGGGGAAGCAAGAAATGACGCAGCTAGAGATGTTGGCAGGAATCAT
GGAAGGCGTCGCACCGTTACTCAAGGCCCGCATCATGCATCTAGTGGAGC
CCAGAAGCTTCACCAACAGCAGTGTTAGCAGCAGCAACCAGCTTATCCTT
AGCTTCCGCCTACTGAATCTCCTGGCATTCTACGACGTGACCCTCCAGAC
TCTTGGCCTTGGCGGTAGCAGTAAGACTACTACCATTGACAGCAGCAGCG
GTACCACTCCCTCCTCCTCTGCGTTCGGGCAAGTCCTCAGGGACACACGT
GCCCAGGCTCATCACTTCTTCGAAGCCGGGCTGCGTCAACTGGGAGAGGC
CGCCATGGCCTCCCCCCCTGCCTATCCCATCGATTTGTCTGCTGCGGATC
TGACGAAGGATGCAGGGAGGCAGCTCACGGAAATTCTGTGGGTGCACGAG
TCGTCCTTGATCCCGACGGAGGAGTTGGGGTATGAGGTAGACGATGTGTT
GACAGCCCTGGTCGAGCCCGTGTTACGTGCGTGTAGGTTGGGTGCAGAGG
GGCTGGACCCATCGGATGCTGCTGTGTACATGTTGAACAATGCGGGGATG
TTGTATACGTGTTTGGTCGGGAGTAATAGTAGCAGCAGCAGCAGTGGTGG
TTGTGTAGGGAAGTGGGTGGAGCGATTGAAGGCGGAGATGGAGACCTGGT
TGGCCTTGTTGGTGAAGTATCAATCCGAGGCCGTGCTAGAAAGGACGGGA
CTTGGGCCACTGTTGGAGAGAGCAGTGGCAGTGGCTGCGTCTTCGTCGGG
GACCCTGTCGGCCACGGCGGGATTGGACGCAGGAACTGTAGGGGAGGTCA
TGAAGGGCTTCTATCAGGGTTTGTTCTCCTCGCCTCAATTCGAGAAATTG
GATGATCCGCGGATGAGGGCAAGAGCGAGGCAAAGGACGTCAAAGGTGAT
TGCGGAGGGGCACGAGACGGCGTACAAATTGTTCAGCAAGGGGGAAAATG
GATACCCGGAAGCGGGGAAGTTTTTGATTCACACGCCCGAGCAGGTTCGG
ATTCTATTGGACTGCGAGGAGGAGGAGGAGGAGGAGGAGGAGGGTATAGA
AAGGAGGAGTGAGGAGGAGGAGGAGGAAAGGGGGCTCACAATGAGGGTGA
ATGATGAATTTAAGCTTTGGAGGTAG

Coding sequence (CDS) from alignment at scaffold_25:122747..124972+

>mRNA_8089 ID=mRNA_8089|Name=jgi.p|Nanoce1779_2|568517|organism=Nannochloropsis oceanica|type=CDS|length=2226bp|location=Sequence derived from alignment at scaffold_25:122747..124972+ (Nannochloropsis oceanica)
ATGGAGCGCGTTCTGGAGCAGAAGGTACGCAAGGTCGTGGAGGGTCGCAC
CGACACGCCCGCCATGCTGGAAGCACTGCAAGCCATCGCCGCTTTTTATG
GGCACCGGGAGGGGGGCAACACGGCCGAGGCCCGCAAGTCCCTGCGGCAA
GATCTGGAGAAGCAAAACATGGTCCTGTGCGACCGCTTCTTGGAGTTGTT
CGAAGTGCTGCAAAAGCGGCTGGCGGTGTTGGACGCCCACACGGCCAACT
TAGAGGGTCATTGCCAGGGGATTCATGCCCGGATTGAGACGGCAGAAGAG
AGCATGAGTGCATTTCTCGCTCGGGCCCACGCCTTGAAAAAGCAACAAGC
AGACGCCGAGGCCAAAGCGGCGCAAATTACTTCTTTTCTGGACAGGTTTA
CCTTGTCGGACGCGGAAGTGGCCGCATTACGATTTGAGGCAGTGGATAAA
ATTATTGAGGGGGGACAGCGCCCCTTCTTTGCCGCCATGACACGCGTGCA
GGAAATCAGGGCAGGCTGTGGTGCCCTCGTAGGGTCACCACAGCAAAGCG
CAGGATTTGAGATGTTAGAAGCCTTGTCTGAGCATCAAGAGGCAGCTTTT
CGACGATTGCATTCGTGGATCCTGCAGCGGTGCGCGGGGTTGGAACGAGA
TGATGCTGCCGGAGATGTAGAGGAGAACGACGTGGCGTTGGGGTTGGGAT
TGAGGACGATGAGGGAACGCTCGGCGCTATTTGTTCATTGTCAAGAGTGC
TTATTGCAACGGAGAAAGGACGTGGTCCGACGGAGGTTTTTGCAGGCCCT
CTCAGGTGCTGGATTGGGTGGTAGTGGAGAAAGTGGGGGAAGGAGGGAGG
GGAGAAGCCTGAGTGGGAGTGGCGGACAGAGGCCAATTGAAATGCAGGCT
CATGACCCAGTGAGATATTTGAGTGATATCTTGGCGTGGCTTCATCAGAC
GGTTGCGTCGGAGAAGGAATTTCTGCAGAACTTGCTCGGGGCGGGGGCAG
GGGAGGGAGGGGACAAGGAGAAAGATGAGATAAGCGCGTCGTTGTCATCG
TCGTCGGGGAAGCAAGAAATGACGCAGCTAGAGATGTTGGCAGGAATCAT
GGAAGGCGTCGCACCGTTACTCAAGGCCCGCATCATGCATCTAGTGGAGC
CCAGAAGCTTCACCAACAGCAGTGTTAGCAGCAGCAACCAGCTTATCCTT
AGCTTCCGCCTACTGAATCTCCTGGCATTCTACGACGTGACCCTCCAGAC
TCTTGGCCTTGGCGGTAGCAGTAAGACTACTACCATTGACAGCAGCAGCG
GTACCACTCCCTCCTCCTCTGCGTTCGGGCAAGTCCTCAGGGACACACGT
GCCCAGGCTCATCACTTCTTCGAAGCCGGGCTGCGTCAACTGGGAGAGGC
CGCCATGGCCTCCCCCCCTGCCTATCCCATCGATTTGTCTGCTGCGGATC
TGACGAAGGATGCAGGGAGGCAGCTCACGGAAATTCTGTGGGTGCACGAG
TCGTCCTTGATCCCGACGGAGGAGTTGGGGTATGAGGTAGACGATGTGTT
GACAGCCCTGGTCGAGCCCGTGTTACGTGCGTGTAGGTTGGGTGCAGAGG
GGCTGGACCCATCGGATGCTGCTGTGTACATGTTGAACAATGCGGGGATG
TTGTATACGTGTTTGGTCGGGAGTAATAGTAGCAGCAGCAGCAGTGGTGG
TTGTGTAGGGAAGTGGGTGGAGCGATTGAAGGCGGAGATGGAGACCTGGT
TGGCCTTGTTGGTGAAGTATCAATCCGAGGCCGTGCTAGAAAGGACGGGA
CTTGGGCCACTGTTGGAGAGAGCAGTGGCAGTGGCTGCGTCTTCGTCGGG
GACCCTGTCGGCCACGGCGGGATTGGACGCAGGAACTGTAGGGGAGGTCA
TGAAGGGCTTCTATCAGGGTTTGTTCTCCTCGCCTCAATTCGAGAAATTG
GATGATCCGCGGATGAGGGCAAGAGCGAGGCAAAGGACGTCAAAGGTGAT
TGCGGAGGGGCACGAGACGGCGTACAAATTGTTCAGCAAGGGGGAAAATG
GATACCCGGAAGCGGGGAAGTTTTTGATTCACACGCCCGAGCAGGTTCGG
ATTCTATTGGACTGCGAGGAGGAGGAGGAGGAGGAGGAGGAGGGTATAGA
AAGGAGGAGTGAGGAGGAGGAGGAGGAAAGGGGGCTCACAATGAGGGTGA
ATGATGAATTTAAGCTTTGGAGGTAG

Synonyms

Publications