jgi.p|Nanoce1779_2|602444, mRNA_8088 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|602444
Unique NamemRNA_8088
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length497
Alignment locationscaffold_25:122300..122796 -

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Properties
Property NameValue
TranscriptId602530
TrackFilteredModels2
ProteinId602444
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_25supercontigscaffold_25:122300..122796 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|602444gene_8088Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|602444mRNA_8088-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8088CDS_8088Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8088 ID=mRNA_8088|Name=jgi.p|Nanoce1779_2|602444|organism=Nannochloropsis oceanica|type=mRNA|length=497bp
GTGCGACCCTCCACGACCTTGCGTACCTTCTGCTCCAGAACGCGCTCCAT
GGCTTGCGGCTCTCTATGGCATGTGGGTTGATATTTGTGTTCAAAGTTTG
ATCGAGCTGCTTGGTGTGGGCGCGATGACACGAGGAAAAAGTGGGCGAGG
ATATGGCGACGTCCTGGACGAGGGGCATCCTCCGCGCAATGGTGGCCCAT
GCCAGTTTGCCCGGGTTGTGTATGTCCTTACAATGCATATGTATGTGTGG
TAATTGTGCCGGGGAAAGCCTTCGGGATTGGCATATGAATCGCTGGCAAG
ACAAGGATTTGTCGTCGCAATACTTTACAATCCAAACCTCCCCTCCTTCG
GCAGCATCATGGCATGCATGCTTTTCCATTTTCTCACTTGCGGGCCAACT
CTACGGCTCAGCAATGTAAGGTTGTCGGTATGGCAGACAGCTATAGCTAT
AAATGATAAGTCTGAGGCCTTGCATCTTAAAATTCCATGGAAAAACT
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protein sequence of jgi.p|Nanoce1779_2|602444

>mRNA_8088-protein ID=mRNA_8088-protein|Name=jgi.p|Nanoce1779_2|602444|organism=Nannochloropsis oceanica|type=polypeptide|length=89bp
MATSWTRGILRAMVAHASLPGLCMSLQCICMCGNCAGESLRDWHMNRWQD
KDLSSQYFTIQTSPPSAASWHACFSIFSLAGQLYGSAM*
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mRNA from alignment at scaffold_25:122300..122796-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8088 ID=mRNA_8088|Name=jgi.p|Nanoce1779_2|602444|organism=Nannochloropsis oceanica|type=mRNA|length=497bp|location=Sequence derived from alignment at scaffold_25:122300..122796- (Nannochloropsis oceanica)
GTGCGACCCTCCACGACCTTGCGTACCTTCTGCTCCAGAACGCGCTCCAT
GGCTTGCGGCTCTCTATGGCATGTGGGTTGATATTTGTGTTCAAAGTTTG
ATCGAGCTGCTTGGTGTGGGCGCGATGACACGAGGAAAAAGTGGGCGAGG
ATATGGCGACGTCCTGGACGAGGGGCATCCTCCGCGCAATGGTGGCCCAT
GCCAGTTTGCCCGGGTTGTGTATGTCCTTACAATGCATATGTATGTGTGG
TAATTGTGCCGGGGAAAGCCTTCGGGATTGGCATATGAATCGCTGGCAAG
ACAAGGATTTGTCGTCGCAATACTTTACAATCCAAACCTCCCCTCCTTCG
GCAGCATCATGGCATGCATGCTTTTCCATTTTCTCACTTGCGGGCCAACT
CTACGGCTCAGCAATGTAAGGTTGTCGGTATGGCAGACAGCTATAGCTAT
AAATGATAAGTCTGAGGCCTTGCATCTTAAAATTCCATGGAAAAACT
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Coding sequence (CDS) from alignment at scaffold_25:122300..122796-

>mRNA_8088 ID=mRNA_8088|Name=jgi.p|Nanoce1779_2|602444|organism=Nannochloropsis oceanica|type=CDS|length=267bp|location=Sequence derived from alignment at scaffold_25:122300..122796- (Nannochloropsis oceanica)
ATGGCGACGTCCTGGACGAGGGGCATCCTCCGCGCAATGGTGGCCCATGC
CAGTTTGCCCGGGTTGTGTATGTCCTTACAATGCATATGTATGTGTGGTA
ATTGTGCCGGGGAAAGCCTTCGGGATTGGCATATGAATCGCTGGCAAGAC
AAGGATTTGTCGTCGCAATACTTTACAATCCAAACCTCCCCTCCTTCGGC
AGCATCATGGCATGCATGCTTTTCCATTTTCTCACTTGCGGGCCAACTCT
ACGGCTCAGCAATGTAA
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Synonyms
Publications