jgi.p|Nanoce1779_2|602442, mRNA_8087 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|602442
Unique NamemRNA_8087
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1365
Alignment locationscaffold_25:120935..122299 +

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Properties
Property NameValue
TranscriptId602528
TrackFilteredModels2
ProteinId602442
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_25supercontigscaffold_25:120935..122299 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|602442gene_8087Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|602442mRNA_8087-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8087CDS_8087Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8087 ID=mRNA_8087|Name=jgi.p|Nanoce1779_2|602442|organism=Nannochloropsis oceanica|type=mRNA|length=1365bp
ACAGGCAGCTCGGGAGAGGACCCCATGCGCACCTGGACTTTGATGATGGT
CACCGTCTTGTCCTTGGTTGGGCGTGGGGTCCGTGGGTTTAAAACATTGC
TCAACGACAAACGCGCCCTCCCACCAACACGACAACGCTTCGCCGCCTCA
GCAACACCATCAGGCGCGGGCGCGGTGGTCAGAGGCCCTATCCAATTCTT
TTACAATGATATTTTCCAAGTGGATATGCCCGAAGGGCACAGATTTCCGA
TGGAAAAATATGCAGCTTTTAGACGGCAAGCCCAACAACGTCTCTACTCC
TTGCCCAGCGTCAGCTTCCACCCTTCGCCCCTGGCCAGCCTGGCGGACCT
AGAAACCACCCACGACCCCACTTACATTCAACGGTATCTTACGGGGCACA
TCACAGCACAAGAAAAACGCGAGTCGGGATTCGATTGGAACGAGCAGCAT
GTAAACCGAACCCTGTCTTCGGTGGGTGGATCAGTCGCAGCAACTCATGC
AGTACTTCGACAAGATAACGCTCGCGGGCTGGCGCCGCAAGTAGGTGCGC
ATTTAGCAGGGGGCACCCACCATGCGTTCAAAGCCAAGATGGAGGGGTTC
TGTATTTTTAGTGACATTGCAGTCGCGGCTAATGTGGCTCTGAGGGACTA
CCCCAACCAAGTCCGCAAAATTTTGATTGTTGACTTGGATGTCCACCAAG
GGAATGGCAACGCCGTCCTCTTTCAAGATGACGATCGTGTCTATACCTTT
TCTATGCATTGTAAAGGGAACTATTTCTCTGACAAAGAACAGTCCGACCA
CGACGTAGAAGTCGAGGCGAACACAGGCGATGCTGGCTACCTCGCCCTCC
TTGAACAACACCTTCCTCTCGCCTTCGAGCAGTCAAAGCCGGATCTCGTC
TTCTTTCAAGCTGGGATCGATCCCCACATAAGTGACCGGCTCGGGAAACT
CTCTTTGACACGCGCTGGGTTGCAAAGACGAAATCTACGCGTTTTTCAGT
TTGCCGAAGCTTACCGAAGCAAGTGCGTGGTGGTAGCCGGAGGTGGTTAC
CCGTCGGATAGCGACCCTTCGTCGGGTCCATATGGGGATGTAATTGCAGC
ACACGCTGACGTGTATGTAGGAGCAGCGGAGTTTTTTGGTGGGGGAAGTA
AGATGGTGCCCCTGTTGAGGTAGTGTATGAAAGGAAAGAGGACGGGAGAG
AGCCAGGGAAAGAGTGGAGGGAAGGAGGTTTAGAGGATACAGGAAGAAGT
CGAAGACAATCAAAGTTTAAACCTTAGGTGATTAAGTCGAAGTACACACA
AATAAAAATAAATCACGTCCATCGTCTTCTACTCCCTCCACCACTGGTTA
GGTTCAGTGGTTTGT
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protein sequence of jgi.p|Nanoce1779_2|602442

>mRNA_8087-protein ID=mRNA_8087-protein|Name=jgi.p|Nanoce1779_2|602442|organism=Nannochloropsis oceanica|type=polypeptide|length=383bp
MRTWTLMMVTVLSLVGRGVRGFKTLLNDKRALPPTRQRFAASATPSGAGA
VVRGPIQFFYNDIFQVDMPEGHRFPMEKYAAFRRQAQQRLYSLPSVSFHP
SPLASLADLETTHDPTYIQRYLTGHITAQEKRESGFDWNEQHVNRTLSSV
GGSVAATHAVLRQDNARGLAPQVGAHLAGGTHHAFKAKMEGFCIFSDIAV
AANVALRDYPNQVRKILIVDLDVHQGNGNAVLFQDDDRVYTFSMHCKGNY
FSDKEQSDHDVEVEANTGDAGYLALLEQHLPLAFEQSKPDLVFFQAGIDP
HISDRLGKLSLTRAGLQRRNLRVFQFAEAYRSKCVVVAGGGYPSDSDPSS
GPYGDVIAAHADVYVGAAEFFGGGSKMVPLLR*
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mRNA from alignment at scaffold_25:120935..122299+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8087 ID=mRNA_8087|Name=jgi.p|Nanoce1779_2|602442|organism=Nannochloropsis oceanica|type=mRNA|length=1365bp|location=Sequence derived from alignment at scaffold_25:120935..122299+ (Nannochloropsis oceanica)
ACAGGCAGCTCGGGAGAGGACCCCATGCGCACCTGGACTTTGATGATGGT
CACCGTCTTGTCCTTGGTTGGGCGTGGGGTCCGTGGGTTTAAAACATTGC
TCAACGACAAACGCGCCCTCCCACCAACACGACAACGCTTCGCCGCCTCA
GCAACACCATCAGGCGCGGGCGCGGTGGTCAGAGGCCCTATCCAATTCTT
TTACAATGATATTTTCCAAGTGGATATGCCCGAAGGGCACAGATTTCCGA
TGGAAAAATATGCAGCTTTTAGACGGCAAGCCCAACAACGTCTCTACTCC
TTGCCCAGCGTCAGCTTCCACCCTTCGCCCCTGGCCAGCCTGGCGGACCT
AGAAACCACCCACGACCCCACTTACATTCAACGGTATCTTACGGGGCACA
TCACAGCACAAGAAAAACGCGAGTCGGGATTCGATTGGAACGAGCAGCAT
GTAAACCGAACCCTGTCTTCGGTGGGTGGATCAGTCGCAGCAACTCATGC
AGTACTTCGACAAGATAACGCTCGCGGGCTGGCGCCGCAAGTAGGTGCGC
ATTTAGCAGGGGGCACCCACCATGCGTTCAAAGCCAAGATGGAGGGGTTC
TGTATTTTTAGTGACATTGCAGTCGCGGCTAATGTGGCTCTGAGGGACTA
CCCCAACCAAGTCCGCAAAATTTTGATTGTTGACTTGGATGTCCACCAAG
GGAATGGCAACGCCGTCCTCTTTCAAGATGACGATCGTGTCTATACCTTT
TCTATGCATTGTAAAGGGAACTATTTCTCTGACAAAGAACAGTCCGACCA
CGACGTAGAAGTCGAGGCGAACACAGGCGATGCTGGCTACCTCGCCCTCC
TTGAACAACACCTTCCTCTCGCCTTCGAGCAGTCAAAGCCGGATCTCGTC
TTCTTTCAAGCTGGGATCGATCCCCACATAAGTGACCGGCTCGGGAAACT
CTCTTTGACACGCGCTGGGTTGCAAAGACGAAATCTACGCGTTTTTCAGT
TTGCCGAAGCTTACCGAAGCAAGTGCGTGGTGGTAGCCGGAGGTGGTTAC
CCGTCGGATAGCGACCCTTCGTCGGGTCCATATGGGGATGTAATTGCAGC
ACACGCTGACGTGTATGTAGGAGCAGCGGAGTTTTTTGGTGGGGGAAGTA
AGATGGTGCCCCTGTTGAGGTAGTGTATGAAAGGAAAGAGGACGGGAGAG
AGCCAGGGAAAGAGTGGAGGGAAGGAGGTTTAGAGGATACAGGAAGAAGT
CGAAGACAATCAAAGTTTAAACCTTAGGTGATTAAGTCGAAGTACACACA
AATAAAAATAAATCACGTCCATCGTCTTCTACTCCCTCCACCACTGGTTA
GGTTCAGTGGTTTGT
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Coding sequence (CDS) from alignment at scaffold_25:120935..122299+

>mRNA_8087 ID=mRNA_8087|Name=jgi.p|Nanoce1779_2|602442|organism=Nannochloropsis oceanica|type=CDS|length=1149bp|location=Sequence derived from alignment at scaffold_25:120935..122299+ (Nannochloropsis oceanica)
ATGCGCACCTGGACTTTGATGATGGTCACCGTCTTGTCCTTGGTTGGGCG
TGGGGTCCGTGGGTTTAAAACATTGCTCAACGACAAACGCGCCCTCCCAC
CAACACGACAACGCTTCGCCGCCTCAGCAACACCATCAGGCGCGGGCGCG
GTGGTCAGAGGCCCTATCCAATTCTTTTACAATGATATTTTCCAAGTGGA
TATGCCCGAAGGGCACAGATTTCCGATGGAAAAATATGCAGCTTTTAGAC
GGCAAGCCCAACAACGTCTCTACTCCTTGCCCAGCGTCAGCTTCCACCCT
TCGCCCCTGGCCAGCCTGGCGGACCTAGAAACCACCCACGACCCCACTTA
CATTCAACGGTATCTTACGGGGCACATCACAGCACAAGAAAAACGCGAGT
CGGGATTCGATTGGAACGAGCAGCATGTAAACCGAACCCTGTCTTCGGTG
GGTGGATCAGTCGCAGCAACTCATGCAGTACTTCGACAAGATAACGCTCG
CGGGCTGGCGCCGCAAGTAGGTGCGCATTTAGCAGGGGGCACCCACCATG
CGTTCAAAGCCAAGATGGAGGGGTTCTGTATTTTTAGTGACATTGCAGTC
GCGGCTAATGTGGCTCTGAGGGACTACCCCAACCAAGTCCGCAAAATTTT
GATTGTTGACTTGGATGTCCACCAAGGGAATGGCAACGCCGTCCTCTTTC
AAGATGACGATCGTGTCTATACCTTTTCTATGCATTGTAAAGGGAACTAT
TTCTCTGACAAAGAACAGTCCGACCACGACGTAGAAGTCGAGGCGAACAC
AGGCGATGCTGGCTACCTCGCCCTCCTTGAACAACACCTTCCTCTCGCCT
TCGAGCAGTCAAAGCCGGATCTCGTCTTCTTTCAAGCTGGGATCGATCCC
CACATAAGTGACCGGCTCGGGAAACTCTCTTTGACACGCGCTGGGTTGCA
AAGACGAAATCTACGCGTTTTTCAGTTTGCCGAAGCTTACCGAAGCAAGT
GCGTGGTGGTAGCCGGAGGTGGTTACCCGTCGGATAGCGACCCTTCGTCG
GGTCCATATGGGGATGTAATTGCAGCACACGCTGACGTGTATGTAGGAGC
AGCGGAGTTTTTTGGTGGGGGAAGTAAGATGGTGCCCCTGTTGAGGTAG
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Synonyms
Publications