jgi.p|Nanoce1779_2|201348, mRNA_8083 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|201348
Unique NamemRNA_8083
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1146
Alignment locationscaffold_25:105935..107080 +

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Properties
Property NameValue
TranscriptId201434
TrackFilteredModels2
ProteinId201348
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_25supercontigscaffold_25:105935..107080 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|201348gene_8083Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|201348mRNA_8083-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8083CDS_8083Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8083 ID=mRNA_8083|Name=jgi.p|Nanoce1779_2|201348|organism=Nannochloropsis oceanica|type=mRNA|length=1146bp
AGGAGGAGGAGGAGGAGGAGGAGGAGGAGATGGAATATTTGTAAGACCAC
GGCATATTCTTGCTCAACCCCAGCTGTGGCAGCAGCAGCAGCAGCAGCTA
CAACAATACCAACAGCAGCAGCAACAACAACAACCACCTCAGCAGCAGTA
TCTGCAGCAGCATCAGCAGCAGATCCAGCAACAGCAGCCGGGGCAGCAGC
AGCAGCATCAAGGAGACAGTAATCCTTTAGGCAGGCAGGGGGGAATCGAT
ATGAGCATTAAGAGTCTGGAAATTTGTCGCAGTAGCAGCGGCAGCCGGGG
CACAACCAATGGTGTTGAGAGCGCCGAGTGTCGGAAACGGGCACGTGGAC
CCGACCTTGATGATCAGCAACAGCAGTACCAGCAGCAGCAGTACCATCTG
CAACACCACCACTACCGCTGTCAGGGTGAAGTAGAAGGAGGATATGTAGG
AAGTGAGAAATGTTTGATGACTGCTAGACCTTTCAACGTTGCTTGCCCTC
CTCTTCCTGCTGCTGCTGCTGCGGTAACTTCTGCTGCTGCTGCTGCTCCT
CCTCCTCCTCTTCCAACGATGGCAGCCTCGTGCCTACAACTGCCGCCAGC
AGGAAGGGCACTAAACGAGGGAGGAATGACTGGAATCCATGACAGCGACA
GTAGCACCAGCAGCACTAACCACAGCAAGGCCTTTCGGAAGAGCTGTGAC
TTCTGTACGAGCACCAAGATCAGGTGTGATGGGCACAAGCCCTCTTGTAG
CAACTGTGAGAAGAGAAGCATCACATGTCACTACTCTCAGCGGAAACGAC
CAGGCCCTAAACTAAGTGTTTCGTATTTGAGTGGTCGAGAAATGTTTCAT
GCAAAGTGGGCGCGTGATAACTCTCTTTCTGCTTTACCAGGGGCAGGGAG
AGGAGGAGGAGGAGGAGGAGAAGTTGCAGCAGCAGCAGAAGCAGCTGGAT
CAGGAGGAGGGGGCCCACCGCATTACGTGGCGCAAGTGATGCGCTTTCCA
CAGCTTCCTGTCCCTTGTCGACCGCAACCGCAACAGCAACAGCAACAGCA
ACCGCAACAACAACAGCAACAGCAGCAACAACAACAGCCGTTACCACCAC
CACCACCACCATAACGACAATTAGAACCATCTTTTCCGCATCACAG
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protein sequence of jgi.p|Nanoce1779_2|201348

>mRNA_8083-protein ID=mRNA_8083-protein|Name=jgi.p|Nanoce1779_2|201348|organism=Nannochloropsis oceanica|type=polypeptide|length=288bp
MSIKSLEICRSSSGSRGTTNGVESAECRKRARGPDLDDQQQQYQQQQYHL
QHHHYRCQGEVEGGYVGSEKCLMTARPFNVACPPLPAAAAAVTSAAAAAP
PPPLPTMAASCLQLPPAGRALNEGGMTGIHDSDSSTSSTNHSKAFRKSCD
FCTSTKIRCDGHKPSCSNCEKRSITCHYSQRKRPGPKLSVSYLSGREMFH
AKWARDNSLSALPGAGRGGGGGGEVAAAAEAAGSGGGGPPHYVAQVMRFP
QLPVPCRPQPQQQQQQQPQQQQQQQQQQQPLPPPPPP*
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mRNA from alignment at scaffold_25:105935..107080+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8083 ID=mRNA_8083|Name=jgi.p|Nanoce1779_2|201348|organism=Nannochloropsis oceanica|type=mRNA|length=1146bp|location=Sequence derived from alignment at scaffold_25:105935..107080+ (Nannochloropsis oceanica)
AGGAGGAGGAGGAGGAGGAGGAGGAGGAGATGGAATATTTGTAAGACCAC
GGCATATTCTTGCTCAACCCCAGCTGTGGCAGCAGCAGCAGCAGCAGCTA
CAACAATACCAACAGCAGCAGCAACAACAACAACCACCTCAGCAGCAGTA
TCTGCAGCAGCATCAGCAGCAGATCCAGCAACAGCAGCCGGGGCAGCAGC
AGCAGCATCAAGGAGACAGTAATCCTTTAGGCAGGCAGGGGGGAATCGAT
ATGAGCATTAAGAGTCTGGAAATTTGTCGCAGTAGCAGCGGCAGCCGGGG
CACAACCAATGGTGTTGAGAGCGCCGAGTGTCGGAAACGGGCACGTGGAC
CCGACCTTGATGATCAGCAACAGCAGTACCAGCAGCAGCAGTACCATCTG
CAACACCACCACTACCGCTGTCAGGGTGAAGTAGAAGGAGGATATGTAGG
AAGTGAGAAATGTTTGATGACTGCTAGACCTTTCAACGTTGCTTGCCCTC
CTCTTCCTGCTGCTGCTGCTGCGGTAACTTCTGCTGCTGCTGCTGCTCCT
CCTCCTCCTCTTCCAACGATGGCAGCCTCGTGCCTACAACTGCCGCCAGC
AGGAAGGGCACTAAACGAGGGAGGAATGACTGGAATCCATGACAGCGACA
GTAGCACCAGCAGCACTAACCACAGCAAGGCCTTTCGGAAGAGCTGTGAC
TTCTGTACGAGCACCAAGATCAGGTGTGATGGGCACAAGCCCTCTTGTAG
CAACTGTGAGAAGAGAAGCATCACATGTCACTACTCTCAGCGGAAACGAC
CAGGCCCTAAACTAAGTGTTTCGTATTTGAGTGGTCGAGAAATGTTTCAT
GCAAAGTGGGCGCGTGATAACTCTCTTTCTGCTTTACCAGGGGCAGGGAG
AGGAGGAGGAGGAGGAGGAGAAGTTGCAGCAGCAGCAGAAGCAGCTGGAT
CAGGAGGAGGGGGCCCACCGCATTACGTGGCGCAAGTGATGCGCTTTCCA
CAGCTTCCTGTCCCTTGTCGACCGCAACCGCAACAGCAACAGCAACAGCA
ACCGCAACAACAACAGCAACAGCAGCAACAACAACAGCCGTTACCACCAC
CACCACCACCATAACGACAATTAGAACCATCTTTTCCGCATCACAG
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Coding sequence (CDS) from alignment at scaffold_25:105935..107080+

>mRNA_8083 ID=mRNA_8083|Name=jgi.p|Nanoce1779_2|201348|organism=Nannochloropsis oceanica|type=CDS|length=864bp|location=Sequence derived from alignment at scaffold_25:105935..107080+ (Nannochloropsis oceanica)
ATGAGCATTAAGAGTCTGGAAATTTGTCGCAGTAGCAGCGGCAGCCGGGG
CACAACCAATGGTGTTGAGAGCGCCGAGTGTCGGAAACGGGCACGTGGAC
CCGACCTTGATGATCAGCAACAGCAGTACCAGCAGCAGCAGTACCATCTG
CAACACCACCACTACCGCTGTCAGGGTGAAGTAGAAGGAGGATATGTAGG
AAGTGAGAAATGTTTGATGACTGCTAGACCTTTCAACGTTGCTTGCCCTC
CTCTTCCTGCTGCTGCTGCTGCGGTAACTTCTGCTGCTGCTGCTGCTCCT
CCTCCTCCTCTTCCAACGATGGCAGCCTCGTGCCTACAACTGCCGCCAGC
AGGAAGGGCACTAAACGAGGGAGGAATGACTGGAATCCATGACAGCGACA
GTAGCACCAGCAGCACTAACCACAGCAAGGCCTTTCGGAAGAGCTGTGAC
TTCTGTACGAGCACCAAGATCAGGTGTGATGGGCACAAGCCCTCTTGTAG
CAACTGTGAGAAGAGAAGCATCACATGTCACTACTCTCAGCGGAAACGAC
CAGGCCCTAAACTAAGTGTTTCGTATTTGAGTGGTCGAGAAATGTTTCAT
GCAAAGTGGGCGCGTGATAACTCTCTTTCTGCTTTACCAGGGGCAGGGAG
AGGAGGAGGAGGAGGAGGAGAAGTTGCAGCAGCAGCAGAAGCAGCTGGAT
CAGGAGGAGGGGGCCCACCGCATTACGTGGCGCAAGTGATGCGCTTTCCA
CAGCTTCCTGTCCCTTGTCGACCGCAACCGCAACAGCAACAGCAACAGCA
ACCGCAACAACAACAGCAACAGCAGCAACAACAACAGCCGTTACCACCAC
CACCACCACCATAA
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Synonyms
Publications