jgi.p|Nanoce1779_2|201398, mRNA_8081 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|201398
Unique NamemRNA_8081
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1252
Alignment locationscaffold_25:102419..103887 +

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Properties
Property NameValue
TranscriptId201484
TrackFilteredModels2
ProteinId201398
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_25supercontigscaffold_25:102419..103887 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|201398gene_8081Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|201398mRNA_8081-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8081CDS_8081Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8081 ID=mRNA_8081|Name=jgi.p|Nanoce1779_2|201398|organism=Nannochloropsis oceanica|type=mRNA|length=1252bp
AGAGGGAAGGAAAGAGGGACGGAAGGGGGGCTTACGAAGTAAAGCACAAT
CGCCTTGCCAGCATCATTACAAATGAATAACCTCATACATGCTGCCTTCA
TATATATTTAAATGCTACCATCTTCCGCAACTAATTCATTGGATTGTCGG
GCAGGCCGCGTGTGGAGGTGCGCGCTGAGCGTCTGGTTCAGCCTGTGGAT
ATTCGCGGCGTCATTTTCGACATGTAAGCGTCTAGTTTCTTTTGACTTCC
ACGTGCCTCATCACTCAAACATGCGTGTACCTCCCCTCTCTCACTTTGCT
TTCTGCCTCAGGGACGGCACGCTCACCCGACCAGGTCAGATTGATTTCAA
GCGCATCCATGCGCGGTTAAACATCCCCGACGCCGAGGATATACTTAGCT
TCATTGAAGGCATGCGATCAGCGGCCGAGAGGGAAGCTGCCTTGGCCGTG
GTGGAGGAAGAGGAAATGCGGGGTTTCATCGATGTCCAGCTGCAGGAAGG
GGCAGAGGAGGTGGTGGCTTGGCTGAGGGAGGAGAGAGGGATGCAAGTCG
CCCTGGCCACAAGAAACAACGCCAAGTGTGTGGAGAAACTTGTAGAGCTG
TGTAATTTCCACCCATCCACAATCTCCTCCTCTATGCATGATCTTTCCCT
CAATCCCGCCCTCACGCCCTCCCCCTTTTCTTCCTCCTCGTCCTTGGCCT
CGTCTGGATCATTTCATCCCATCTTGACCCGGGTGTTCAAGAGTGCGGTG
GACGTGGATAAGCTTTTGGCGGTGAGCGAGCTGTGGGGCTTAGCTCCGTC
CTCAATCCTTGTAGTAGGAGACAGTCTTGAGGACTGTCAATGGGCACATA
TGGCAGGCATGAAGTCCTGCCTAATTCATATCGGTGCATCCCACACGCTC
GATACGCTCCGGAGTGGGTATGTGCATACGGTCATTGAATCTCTGGGGGA
GCTCCAGGCGATGCTTGGCGGGCCACAAAAGCCCGAGGGAGAGGAGTAAC
AGCCGATTGGGGATGAGATTCAAGTGGTGGAAATAGAAGTGAAATGAAAA
CTGGCCAACTGCTGTGAAAGAAAGAAAGGCTTGAAGAGCTAAATGGACAA
TTTTCTAAATACATATCGGAGGAGACTATGATTTTAAAAATGTGCTCCCC
CTTGTGTGATTGATTGTTAAATTGGACAGCCCTGGGAAGGCCAGGATGGC
CCATGTGCAGGCGCTTTGCGATATTAACCTCTACAGGCATCTGGAGTTAG
AC
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protein sequence of jgi.p|Nanoce1779_2|201398

>mRNA_8081-protein ID=mRNA_8081-protein|Name=jgi.p|Nanoce1779_2|201398|organism=Nannochloropsis oceanica|type=polypeptide|length=296bp
MLPSSATNSLDCRAGRVWRCALSVWFSLWIFAASFSTCKRLVSFDFHVPH
HSNMRVPPLSHFAFCLRDGTLTRPGQIDFKRIHARLNIPDAEDILSFIEG
MRSAAEREAALAVVEEEEMRGFIDVQLQEGAEEVVAWLREERGMQVALAT
RNNAKCVEKLVELCNFHPSTISSSMHDLSLNPALTPSPFSSSSSLASSGS
FHPILTRVFKSAVDVDKLLAVSELWGLAPSSILVVGDSLEDCQWAHMAGM
KSCLIHIGASHTLDTLRSGYVHTVIESLGELQAMLGGPQKPEGEE*
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mRNA from alignment at scaffold_25:102419..103887+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8081 ID=mRNA_8081|Name=jgi.p|Nanoce1779_2|201398|organism=Nannochloropsis oceanica|type=mRNA|length=1469bp|location=Sequence derived from alignment at scaffold_25:102419..103887+ (Nannochloropsis oceanica)
AGAGGGAAGGAAAGAGGGACGGAAGGGGGGCTTACGAAGTAAAGCACAAT
CGCCTTGCCAGCATCATTACAAATGAATAACCTCATACATGCTGCCTTCA
TATATATTTAAATGCTACCATCTTCCGCAACTAATTCATTGGATTGTCGG
GCAGGCCGCGTGTGGAGGTGCGCGCTGAGCGTCTGGTTCAGCCTGTGGAT
ATTCGCGGCGTCATTTTCGACATGTAAGCGTCTAGTTTCTTTTGACTTCC
ACGTGCCTCATCACTCAAACATGCGTGTACCTCCCCTCTCTCACTTTGCT
TTCTGCCTCAGGGACGGCACGCTCACCCGACCAGGTCAGATTGATTTCAA
GCGCATCCATGCGCGGTTAAACATCCCCGACGCCGAGGATATACTTAGCT
TCATTGAAGGCATGCGATCAGCGGCCGAGAGGGAAGCTGCCTTGGCCGTG
GTGGAGGAAGAGGAAATGCGGGGTTTCATCGATGTCCAGCTGCAGGAAGG
GGCAGAGGAGGTGGTGGCTTGGCTGAGGGAGGAGAGAGGGATGCAAGTCG
CCCTGGCCACAAGAAACAACGCCAAGTGTGTGGAGAAACTTGTAGAGCTG
TGTAATTTCCACCCATCCACAATCTCCTCCTCTATGCATGATCTTTCCCT
CAATCCCGCCCTCACGCCCTCCCCCTTTTCTTCCTCCTCGTCCTTGGCCT
CGTCTGGATCATTTCATCCCATCTTGACCCGGGTGTTCAAGAGTGCGGTG
GACGTGGATAAGCTTTTGGCGGTGAGCGAGCTGTGGGGCTTAGCTCCGTC
CTCAATCCTTGTAGTAGGAGACAGTCTTGGTACGTGTGAGGGAGGAAGGG
TGCGAGGGAACGAGGGGGCAAGGGAACAAGGGGCGAGGGAAAAGGACCGT
CAAACTAGGCTTTTCGGGAGACGTCCATTCATTTGTGTTCTTGAAAGTGC
TCCACTTCCCCTCATCGATAATTTGCGGGCGACCAATACCTCATCCACTT
TCTTCCCTTCTTCCCTATTCCTCACTCCCCTCTCCCGCCAACACAGAGGA
CTGTCAATGGGCACATATGGCAGGCATGAAGTCCTGCCTAATTCATATCG
GTGCATCCCACACGCTCGATACGCTCCGGAGTGGGTATGTGCATACGGTC
ATTGAATCTCTGGGGGAGCTCCAGGCGATGCTTGGCGGGCCACAAAAGCC
CGAGGGAGAGGAGTAACAGCCGATTGGGGATGAGATTCAAGTGGTGGAAA
TAGAAGTGAAATGAAAACTGGCCAACTGCTGTGAAAGAAAGAAAGGCTTG
AAGAGCTAAATGGACAATTTTCTAAATACATATCGGAGGAGACTATGATT
TTAAAAATGTGCTCCCCCTTGTGTGATTGATTGTTAAATTGGACAGCCCT
GGGAAGGCCAGGATGGCCCATGTGCAGGCGCTTTGCGATATTAACCTCTA
CAGGCATCTGGAGTTAGAC
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Coding sequence (CDS) from alignment at scaffold_25:102419..103887+

>mRNA_8081 ID=mRNA_8081|Name=jgi.p|Nanoce1779_2|201398|organism=Nannochloropsis oceanica|type=CDS|length=1776bp|location=Sequence derived from alignment at scaffold_25:102419..103887+ (Nannochloropsis oceanica)
ATGCTACCATCTTCCGCAACTAATTCATTGGATTGTCGGGCAGGCCGCGT
GTGGAGGTGCGCGCTGAGCGTCTGGTTCAGCCTGTGGATATTCGCGGCGT
CATTTTCGACATGTAAGCGTCTAGTTTCTTTTGACTTCCACGTGCCTCAT
CACTCAAACATGCGTGTACCTCCCCTCTCTCACTTTGCTTTCTGCCTCAG
GGACGGCACGCTCACCCGACCAGGTCAGATTGATTTCAAGCGCATCCATG
CGCGGTTAAACATCCCCGACGCCGAGGATATACTTAGCTTCATTGAAGGC
ATGCGATCAGCGGCCGAGAGGGAAGCTGCCTTGGCCGTGGTGGAGGAAGA
GGAAATGCGGGGTTTCATCGATGTCCAGCTGCAGGAAGGGGCAGAGGAGG
TGGTGGCTTGGCTGAGGGAGGAGAGAGGGATGCAAGTCGCCCTGGCCACA
AGAAACAACGCCAAGTGTGTGGAGAAACTTGTAGAGCTGTGTAATTTCCA
CCCATCCACAATCTCCTCCTCTATGCATGATCTTTCCCTCAATCCCGCCC
TCACGCCCTCCCCCTTTTCTTCCTCCTCGTCCTTGGCCTCGTCTGGATCA
TTTCATCCCATCTTGACCCGGGTGTTCAAGAGTGCGGTGGACGTGGATAA
GCTTTTGGCGGTGAGCGAGCTGTGGGGCTTAGCTCCGTCCTCAATCCTTG
TAGTAGGAGACAGTCTTGAGGACTGTCAATGGGCACATATGGCAGGCATG
AAGTCCTGCCTAATTCATATCGGTGCATCCCACACGCTCGATACGCTCCG
GAGTGGGTATGTGCATACGGTCATTGAATCTCTGGGGGAGCTCCAGGCGA
TGCTTGGCGGGCCACAAAAGCCCGAGGGAGAGGAGTAAATGCTACCATCT
TCCGCAACTAATTCATTGGATTGTCGGGCAGGCCGCGTGTGGAGGTGCGC
GCTGAGCGTCTGGTTCAGCCTGTGGATATTCGCGGCGTCATTTTCGACAT
GTAAGCGTCTAGTTTCTTTTGACTTCCACGTGCCTCATCACTCAAACATG
CGTGTACCTCCCCTCTCTCACTTTGCTTTCTGCCTCAGGGACGGCACGCT
CACCCGACCAGGTCAGATTGATTTCAAGCGCATCCATGCGCGGTTAAACA
TCCCCGACGCCGAGGATATACTTAGCTTCATTGAAGGCATGCGATCAGCG
GCCGAGAGGGAAGCTGCCTTGGCCGTGGTGGAGGAAGAGGAAATGCGGGG
TTTCATCGATGTCCAGCTGCAGGAAGGGGCAGAGGAGGTGGTGGCTTGGC
TGAGGGAGGAGAGAGGGATGCAAGTCGCCCTGGCCACAAGAAACAACGCC
AAGTGTGTGGAGAAACTTGTAGAGCTGTGTAATTTCCACCCATCCACAAT
CTCCTCCTCTATGCATGATCTTTCCCTCAATCCCGCCCTCACGCCCTCCC
CCTTTTCTTCCTCCTCGTCCTTGGCCTCGTCTGGATCATTTCATCCCATC
TTGACCCGGGTGTTCAAGAGTGCGGTGGACGTGGATAAGCTTTTGGCGGT
GAGCGAGCTGTGGGGCTTAGCTCCGTCCTCAATCCTTGTAGTAGGAGACA
GTCTTGAGGACTGTCAATGGGCACATATGGCAGGCATGAAGTCCTGCCTA
ATTCATATCGGTGCATCCCACACGCTCGATACGCTCCGGAGTGGGTATGT
GCATACGGTCATTGAATCTCTGGGGGAGCTCCAGGCGATGCTTGGCGGGC
CACAAAAGCCCGAGGGAGAGGAGTAA
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Synonyms
Publications