jgi.p|Nanoce1779_2|602413, mRNA_8078 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|602413
Unique NamemRNA_8078
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length444
Alignment locationscaffold_25:97425..97868 -

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Properties
Property NameValue
TranscriptId602499
TrackFilteredModels2
ProteinId602413
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_25supercontigscaffold_25:97425..97868 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|602413gene_8078Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|602413mRNA_8078-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8078CDS_8078Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8078 ID=mRNA_8078|Name=jgi.p|Nanoce1779_2|602413|organism=Nannochloropsis oceanica|type=mRNA|length=444bp
CTCTGTTTTGAATTCTCGCTGTACTTGTCTTTCTCAGGCCCCTGGTCTTT
AAGTCTAGCTTGCGGCATGTGTTCTTTTGCTGCATAGCATTTTTAAAGTT
AACGCTATCGCCTTTCTCAGGCATCGCTTTGGAGAAGCTGCCTCCCACTT
CCTCCCACTCCCATCCTCGCTTCAAATCAACACATGCATATTCTTTTTGC
CGCCATTTTGGAAACACGCCTGTGCATGCGCCTGTACATCTTACCCGCAT
TGTTTCCTCCCCTCGCACACTGTGCCTTTGAATCGAAGGACCCGAAGCCT
CGCCTCGCTCCCCTTTGCTTTTTCCTCCTTCCCCCTCTGCCGCCTGTCTT
TCTCAAGCCTTCAACCCCGCGCATGTATTCAAATGCTCCTCCTCCACTTC
ACACTCAAACCCCCTCCCTCTGAATCACAACGGACACAGCACAC
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protein sequence of jgi.p|Nanoce1779_2|602413

>mRNA_8078-protein ID=mRNA_8078-protein|Name=jgi.p|Nanoce1779_2|602413|organism=Nannochloropsis oceanica|type=polypeptide|length=80bp
MHILFAAILETRLCMRLYILPALFPPLAHCAFESKDPKPRLAPLCFFLLP
PLPPVFLKPSTPRMYSNAPPPLHTQTPSL*
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mRNA from alignment at scaffold_25:97425..97868-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8078 ID=mRNA_8078|Name=jgi.p|Nanoce1779_2|602413|organism=Nannochloropsis oceanica|type=mRNA|length=444bp|location=Sequence derived from alignment at scaffold_25:97425..97868- (Nannochloropsis oceanica)
CTCTGTTTTGAATTCTCGCTGTACTTGTCTTTCTCAGGCCCCTGGTCTTT
AAGTCTAGCTTGCGGCATGTGTTCTTTTGCTGCATAGCATTTTTAAAGTT
AACGCTATCGCCTTTCTCAGGCATCGCTTTGGAGAAGCTGCCTCCCACTT
CCTCCCACTCCCATCCTCGCTTCAAATCAACACATGCATATTCTTTTTGC
CGCCATTTTGGAAACACGCCTGTGCATGCGCCTGTACATCTTACCCGCAT
TGTTTCCTCCCCTCGCACACTGTGCCTTTGAATCGAAGGACCCGAAGCCT
CGCCTCGCTCCCCTTTGCTTTTTCCTCCTTCCCCCTCTGCCGCCTGTCTT
TCTCAAGCCTTCAACCCCGCGCATGTATTCAAATGCTCCTCCTCCACTTC
ACACTCAAACCCCCTCCCTCTGAATCACAACGGACACAGCACAC
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Coding sequence (CDS) from alignment at scaffold_25:97425..97868-

>mRNA_8078 ID=mRNA_8078|Name=jgi.p|Nanoce1779_2|602413|organism=Nannochloropsis oceanica|type=CDS|length=240bp|location=Sequence derived from alignment at scaffold_25:97425..97868- (Nannochloropsis oceanica)
ATGCATATTCTTTTTGCCGCCATTTTGGAAACACGCCTGTGCATGCGCCT
GTACATCTTACCCGCATTGTTTCCTCCCCTCGCACACTGTGCCTTTGAAT
CGAAGGACCCGAAGCCTCGCCTCGCTCCCCTTTGCTTTTTCCTCCTTCCC
CCTCTGCCGCCTGTCTTTCTCAAGCCTTCAACCCCGCGCATGTATTCAAA
TGCTCCTCCTCCACTTCACACTCAAACCCCCTCCCTCTGA
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Synonyms
Publications