jgi.p|Nanoce1779_2|201269, mRNA_8074 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|201269
Unique Name	mRNA_8074
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1780
Alignment location	scaffold_25:90774..92655 -

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Properties


Property Name	Value
TranscriptId	201355
Track	FilteredModels2
ProteinId	201269

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_25	supercontig	scaffold_25:90774..92655 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|201269	gene_8074	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|201269	mRNA_8074-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8074	CDS_8074	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_25:90774..92655-
coding sequence from alignment at scaffold_25:90774..92655-

mRNA sequence

>mRNA_8074 ID=mRNA_8074|Name=jgi.p|Nanoce1779_2|201269|organism=Nannochloropsis oceanica|type=mRNA|length=1780bp
CCTGCCCTGGCCCTTGCTTATCCTCTTCCCTCCTTAACTTTTATATGAGC
AGGCTACAGGAGGACGACGACGCCGGCACGTGGGACTCAAGAAGCCGCCA
ACATTCCGTTCTAGAGCTTGCATGCGCGTCTTCTCCTACCTGTCCACGTC
CACCACCCGCGGTTCCTGGGCCCAGTGCCTTGAGCGAGTGGCTTTTTTGT
TATTGCTTCGGGACATCAGCGCCGGCTCTCTCCCCAACGGCGGCTGGGTG
CGTTCTAGCATGTCCACATGCAACGCTTCTGCCTCCTTTTCATCCTTGTC
CGCCGCCTCGTCCGCCACATCCACCCCAAATTCGACTTCTTACGCCCACC
ACACCTACCGCCCCCGCCGAGATCTCTACACTCCTCCACCCGCCCATCTG
AGCCTTAAGCAAGTCGTCATCATCGCACGCCACGGCGACCGCGCACCCAT
CGCTCGGAACGTCGGCCAAGCCGTCCAAGACTCGCCCTCCAGTCAGGAAT
TATGGCAATCCAAACTCCCCTCCCTCCAAGAATTGCAGCAGTGGTCAGCA
ACTTACCCCCTCTCCGACCCGTCGCTCAAACCCGTCGATCAGCACGAGCA
CCCTTACGCGCAACTCACCAGGAGGGGGGCCGAGGAGTTGAGGGCCTTAG
GGAAGCATCTCAGGGAGCGTTATGTATGTCACTTGAAGTGGTTGCCCGCC
CAACTTCACTCAGCCGCCACCGCTACTACCGGCGGTGAGAGCGAGAACCT
AGACGTTTTTACTTCCTCTGGCTCTTCCTCCTCTGACTTTGCAACCAAGC
CTCGTCTAATTTACGCTCGAGCCACCAACATCCGCCGCACGCAACAGTCC
TGTCAAAATCTCCTGTTGGGTCTCTACCCACCTCCTTCCTCGCCCAGCTC
CGTCCCCCCGTTGACAATTGACGTGCGTCCCACCCACCTAGAGACGTTGT
ACCCCAACGCCGACCGCTCCTGCTGCCGACAAGGAGAGATCATCGCCGAG
CTGCGGCAGCAACACTACCGCCTCCCTCCCTCCCTCGTCCGCAGCATCAC
CGAGGAAGCTCATGTTCGTCTCGGTCTGACTCCTTCCTTGACCTCCGCTA
CCCCTGCGCTGGTTCCATGGAATCAGGTGCGAGAAGTGTGGACATGCCAT
GCCGTGCATGGATTGCCATTTCCCTCTTCTGTGGAGGGAGGAGGGGTGGA
AGGGGGGGAAGAGGAATGGTTTGAAAGGGTCGAGCAATTTACCTGTCGGA
TGTGGGGGTCTTGGTTTCGGGAGGAGGAGATGACGAGACTGGCCATTGGC
CCCTTCCTGAAAGAGGTCCTGGAGGGGATAGAGGGGAAGGCGAGTGGGAG
GAAGGGTCAGAGGGAAGGTATGGGGGAGGGCGGGAAGGTGGAACATGTGG
TGGTGTACGCGGGGCATGACTCGTCCATCGTGCCTGTGTTGGCTGCACTT
GGGATCTGGGAGGATGTCTGGCCCCCCTATGCTGCAAACATTGTCTTGGA
GCTTGCAGAGAAGGAGGGAGGGGAGGTGTGGTATCCCTTAGAGGTGTTTT
CGGAGAAGATAAAGCGGTTTCTGCCGACGGATTATGAGAAGGAGTGTCGG
TGTCGAAATGACGAAGAGGGGAAGGATGGCGGGGAGGAGGACGAGGTCGC
GTCGTCGATCAAGTGAGCGAGGAGGGAGATTGAGATGTCTGGATCTAAAC
GTTTGAGGAAAAGGTGCCCAACGGATAAACCGAGAATGAACGCGGCTATA
AATAGCCAGTATTGTAAGCATCAGGAGGTC

protein sequence of jgi.p|Nanoce1779_2|201269

>mRNA_8074-protein ID=mRNA_8074-protein|Name=jgi.p|Nanoce1779_2|201269|organism=Nannochloropsis oceanica|type=polypeptide|length=515bp
MRVFSYLSTSTTRGSWAQCLERVAFLLLLRDISAGSLPNGGWVRSSMSTC
NASASFSSLSAASSATSTPNSTSYAHHTYRPRRDLYTPPPAHLSLKQVVI
IARHGDRAPIARNVGQAVQDSPSSQELWQSKLPSLQELQQWSATYPLSDP
SLKPVDQHEHPYAQLTRRGAEELRALGKHLRERYVCHLKWLPAQLHSAAT
ATTGGESENLDVFTSSGSSSSDFATKPRLIYARATNIRRTQQSCQNLLLG
LYPPPSSPSSVPPLTIDVRPTHLETLYPNADRSCCRQGEIIAELRQQHYR
LPPSLVRSITEEAHVRLGLTPSLTSATPALVPWNQVREVWTCHAVHGLPF
PSSVEGGGVEGGEEEWFERVEQFTCRMWGSWFREEEMTRLAIGPFLKEVL
EGIEGKASGRKGQREGMGEGGKVEHVVVYAGHDSSIVPVLAALGIWEDVW
PPYAANIVLELAEKEGGEVWYPLEVFSEKIKRFLPTDYEKECRCRNDEEG
KDGGEEDEVASSIK*

mRNA from alignment at scaffold_25:90774..92655-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8074 ID=mRNA_8074|Name=jgi.p|Nanoce1779_2|201269|organism=Nannochloropsis oceanica|type=mRNA|length=1882bp|location=Sequence derived from alignment at scaffold_25:90774..92655- (Nannochloropsis oceanica)
CCTGCCCTGGCCCTTGCTTATCCTCTTCCCTCCTTAACTTTTATATGAGC
AGGCTACAGGAGGACGACGACGCCGGCACGTGGGACTCAAGAAGCCGCCA
ACATTCCGTTCTAGAGCTTGCATGCGCGTCTTCTCCTACCTGTCCACGTC
CACCACCCGCGGTTCCTGGGCCCAGTGCCTTGAGCGAGTGGCTTTTTTGT
TATTGCTTCGGGACATCAGCGCCGGCTCTCTCCCCAACGGCGGCTGGGTG
CGTTCTAGCATGTCCACATGCAACGCTTCTGCCTCCTTTTCATCCTTGTC
CGCCGCCTCGTCCGCCACATCCACCCCAAATTCGACTTCTTACGCCCACC
ACACCTACCGCCCCCGCCGAGATCTCTACACTCCTCCACCCGCCCATCTG
AGCCTTAAGCAAGTCGTCATCATCGCACGCCACGGCGACCGCGCACCCAT
CGCTCGGAACGTCGGCCAAGCCGTCCAAGACTCGCCCTCCAGTCAGGAAT
TATGGCAATCCAAACTCCCCTCCCTCCAAGAATTGCAGCAGTGGTCAGCA
ACTTACCCCCTCTCCGACCCGTCGCTCAAACCCGTCGATCAGCACGAGCA
CCCTTACGCGCAACTCACCAGGAGGGGGGCCGAGGAGTTGAGGGCCTTAG
GGAAGCATCTCAGGGAGCGTTATGTATGTCACTTGAAGTGGTTGCCCGCC
CAACTTCACTCAGCCGCCACCGCTACTACCGGCGGTGAGAGCGAGAACCT
AGACGTTTTTACTTCCTCTGGCTCTTCCTCCTCTGACTTTGCAACCAAGC
CTCGTCTAATTTACGCTCGAGCCACCAACATCCGCCGCACGCAACAGTCC
TGTCAAAATCTCCTGTTGGGTCTCTACCCACCTCCTTCCTCGCCCAGCTC
CGTCCCCCCGTTGACAATTGACGTGCGTCCCACCCACCTAGAGACGTTGT
ACCCCAACGCCGACCGCTCCTGCTGCCGACAAGGAGAGATCATCGCCGAG
CTGCGGCAGCAACACTACCGCCTCCCTCCCTCCCTCGTCCGCAGCATCAC
CGAGGAAGCTCATGTTCGTCTCGGTCTGACTCCTTCCTTGACCTCCGCTA
CCCCTGCGCTGGTTCCATGGAATCAGGTGCGAGAAGTGTGGACATGCCAT
GCCGTGCATGGATTGCCATTTCCCTCTTCTGTGGAGGGAGGAGGGGTGGA
AGGGGGGGAAGAGGAATGGTTTGAAAGGGTCGAGCAATTTACCTGTCGGA
TGTGGGGGTCTTGGTTTCGGGAGGAGGAGATGACGAGACTGGCCATTGGC
CCCTTCCTGAAAGAGGTCCTGGAGGGGATAGAGGGGAAGGCGAGTGGGAG
GAAGGGTCAGAGGGAAGGTATGGGGGAGGGCGGGAAGGTGGAACATGTGG
TGGTGTACGCGGGGCATGACTCGTCCATCGTGCCTGTGTTGGCTGCACTT
GGGATCTGGGAGGATGTCTGGCCCCCCTATGCTGCAAACATTGTCTTGGA
GCTTGCAGAGAAGGAGGGAGGGAGGGAAGGAGGAAGGGTGGGAGAGCATT
TTGTGCGGATATTGTATAATGATGAGGAGAGGGTGTTGTTTGGAGAAGAA
GGGGAGGGATGGAGGGAGGGAGGGGAGGTGTGGTATCCCTTAGAGGTGTT
TTCGGAGAAGATAAAGCGGTTTCTGCCGACGGATTATGAGAAGGAGTGTC
GGTGTCGAAATGACGAAGAGGGGAAGGATGGCGGGGAGGAGGACGAGGTC
GCGTCGTCGATCAAGTGAGCGAGGAGGGAGATTGAGATGTCTGGATCTAA
ACGTTTGAGGAAAAGGTGCCCAACGGATAAACCGAGAATGAACGCGGCTA
TAAATAGCCAGTATTGTAAGCATCAGGAGGTC

Coding sequence (CDS) from alignment at scaffold_25:90774..92655-

>mRNA_8074 ID=mRNA_8074|Name=jgi.p|Nanoce1779_2|201269|organism=Nannochloropsis oceanica|type=CDS|length=3090bp|location=Sequence derived from alignment at scaffold_25:90774..92655- (Nannochloropsis oceanica)
GGAGGGAGGGGAGGTGTGGTATCCCTTAGAGGTGTTTTCGGAGAAGATAA
AGCGGTTTCTGCCGACGGATTATGAGAAGGAGTGTCGGTGTCGAAATGAC
GAAGAGGGGAAGGATGGCGGGGAGGAGGACGAGGTCGCGTCGTCGATCAA
GTGAATGCGCGTCTTCTCCTACCTGTCCACGTCCACCACCCGCGGTTCCT
GGGCCCAGTGCCTTGAGCGAGTGGCTTTTTTGTTATTGCTTCGGGACATC
AGCGCCGGCTCTCTCCCCAACGGCGGCTGGGTGCGTTCTAGCATGTCCAC
ATGCAACGCTTCTGCCTCCTTTTCATCCTTGTCCGCCGCCTCGTCCGCCA
CATCCACCCCAAATTCGACTTCTTACGCCCACCACACCTACCGCCCCCGC
CGAGATCTCTACACTCCTCCACCCGCCCATCTGAGCCTTAAGCAAGTCGT
CATCATCGCACGCCACGGCGACCGCGCACCCATCGCTCGGAACGTCGGCC
AAGCCGTCCAAGACTCGCCCTCCAGTCAGGAATTATGGCAATCCAAACTC
CCCTCCCTCCAAGAATTGCAGCAGTGGTCAGCAACTTACCCCCTCTCCGA
CCCGTCGCTCAAACCCGTCGATCAGCACGAGCACCCTTACGCGCAACTCA
CCAGGAGGGGGGCCGAGGAGTTGAGGGCCTTAGGGAAGCATCTCAGGGAG
CGTTATGTATGTCACTTGAAGTGGTTGCCCGCCCAACTTCACTCAGCCGC
CACCGCTACTACCGGCGGTGAGAGCGAGAACCTAGACGTTTTTACTTCCT
CTGGCTCTTCCTCCTCTGACTTTGCAACCAAGCCTCGTCTAATTTACGCT
CGAGCCACCAACATCCGCCGCACGCAACAGTCCTGTCAAAATCTCCTGTT
GGGTCTCTACCCACCTCCTTCCTCGCCCAGCTCCGTCCCCCCGTTGACAA
TTGACGTGCGTCCCACCCACCTAGAGACGTTGTACCCCAACGCCGACCGC
TCCTGCTGCCGACAAGGAGAGATCATCGCCGAGCTGCGGCAGCAACACTA
CCGCCTCCCTCCCTCCCTCGTCCGCAGCATCACCGAGGAAGCTCATGTTC
GTCTCGGTCTGACTCCTTCCTTGACCTCCGCTACCCCTGCGCTGGTTCCA
TGGAATCAGGTGCGAGAAGTGTGGACATGCCATGCCGTGCATGGATTGCC
ATTTCCCTCTTCTGTGGAGGGAGGAGGGGTGGAAGGGGGGGAAGAGGAAT
GGTTTGAAAGGGTCGAGCAATTTACCTGTCGGATGTGGGGGTCTTGGTTT
CGGGAGGAGGAGATGACGAGACTGGCCATTGGCCCCTTCCTGAAAGAGGT
CCTGGAGGGGATAGAGGGGAAGGCGAGTGGGAGGAAGGGTCAGAGGGAAG
GTATGGGGGAGGGCGGGAAGGTGGAACATGTGGTGGTGTACGCGGGGCAT
GACTCGTCCATCGTGCCTGTGTTGGCTGCACTTGGGATCTGGGAGGATGT
CTGGCCCCCCTATGCTGCAAACATTGTCTTGGAGCTTGCAGAGAAGGAGG
GAGGGGAGGTGTGGTATCCCTTAGAGGTGTTTTCGGAGAAGATAAAGCGG
TTTCTGCCGACGGATTATGAGAAGGAGTGTCGGTGTCGAAATGACGAAGA
GGGGAAGGATGGCGGGGAGGAGGACGAGGTCGCGTCGTCGATCAAGTGAA
TGCGCGTCTTCTCCTACCTGTCCACGTCCACCACCCGCGGTTCCTGGGCC
CAGTGCCTTGAGCGAGTGGCTTTTTTGTTATTGCTTCGGGACATCAGCGC
CGGCTCTCTCCCCAACGGCGGCTGGGTGCGTTCTAGCATGTCCACATGCA
ACGCTTCTGCCTCCTTTTCATCCTTGTCCGCCGCCTCGTCCGCCACATCC
ACCCCAAATTCGACTTCTTACGCCCACCACACCTACCGCCCCCGCCGAGA
TCTCTACACTCCTCCACCCGCCCATCTGAGCCTTAAGCAAGTCGTCATCA
TCGCACGCCACGGCGACCGCGCACCCATCGCTCGGAACGTCGGCCAAGCC
GTCCAAGACTCGCCCTCCAGTCAGGAATTATGGCAATCCAAACTCCCCTC
CCTCCAAGAATTGCAGCAGTGGTCAGCAACTTACCCCCTCTCCGACCCGT
CGCTCAAACCCGTCGATCAGCACGAGCACCCTTACGCGCAACTCACCAGG
AGGGGGGCCGAGGAGTTGAGGGCCTTAGGGAAGCATCTCAGGGAGCGTTA
TGTATGTCACTTGAAGTGGTTGCCCGCCCAACTTCACTCAGCCGCCACCG
CTACTACCGGCGGTGAGAGCGAGAACCTAGACGTTTTTACTTCCTCTGGC
TCTTCCTCCTCTGACTTTGCAACCAAGCCTCGTCTAATTTACGCTCGAGC
CACCAACATCCGCCGCACGCAACAGTCCTGTCAAAATCTCCTGTTGGGTC
TCTACCCACCTCCTTCCTCGCCCAGCTCCGTCCCCCCGTTGACAATTGAC
GTGCGTCCCACCCACCTAGAGACGTTGTACCCCAACGCCGACCGCTCCTG
CTGCCGACAAGGAGAGATCATCGCCGAGCTGCGGCAGCAACACTACCGCC
TCCCTCCCTCCCTCGTCCGCAGCATCACCGAGGAAGCTCATGTTCGTCTC
GGTCTGACTCCTTCCTTGACCTCCGCTACCCCTGCGCTGGTTCCATGGAA
TCAGGTGCGAGAAGTGTGGACATGCCATGCCGTGCATGGATTGCCATTTC
CCTCTTCTGTGGAGGGAGGAGGGGTGGAAGGGGGGGAAGAGGAATGGTTT
GAAAGGGTCGAGCAATTTACCTGTCGGATGTGGGGGTCTTGGTTTCGGGA
GGAGGAGATGACGAGACTGGCCATTGGCCCCTTCCTGAAAGAGGTCCTGG
AGGGGATAGAGGGGAAGGCGAGTGGGAGGAAGGGTCAGAGGGAAGGTATG
GGGGAGGGCGGGAAGGTGGAACATGTGGTGGTGTACGCGGGGCATGACTC
GTCCATCGTGCCTGTGTTGGCTGCACTTGGGATCTGGGAGGATGTCTGGC
CCCCCTATGCTGCAAACATTGTCTTGGAGCTTGCAGAGAA

Synonyms

Publications