jgi.p|Nanoce1779_2|602398, mRNA_8071 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|602398
Unique NamemRNA_8071
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length926
Alignment locationscaffold_25:83926..84851 +

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Properties
Property NameValue
TranscriptId602484
TrackFilteredModels2
ProteinId602398
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_25supercontigscaffold_25:83926..84851 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|602398gene_8071Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|602398mRNA_8071-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8071CDS_8071Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8071 ID=mRNA_8071|Name=jgi.p|Nanoce1779_2|602398|organism=Nannochloropsis oceanica|type=mRNA|length=926bp
CTCTTTCTCTTTCTCTTTCTCCTCCTTCTCTACCTCCTCCTCCACCACCA
CCACCGTTACCACCGCCGCCTCCTGTACTTTTCCCTCCTTTCTTCTTTTT
CTGCTGCTGCGACTGTTGCTGCCGTCCCTCCTGCTGCTGCTGCGGAAGCG
GCTGCTGCTCTTGATTCCTATTTCCTTTCGGAGGACCAGAAGCTTCCGGC
GGCAAAAGCCCAGGAGGGGCTTTACCTCTCAAGTAGTCTTCAAGGGCGGG
CGCAACGGTAGCCACATCCAAGCCGTGCTGCCGACAAAATGCCTTCACAG
CAGGGGCCAGACGCTGCCCTTCCCTCAGTTCCAAGTTCTCGGTCTGGGTG
GAAGAAATGTCAATCTCGAAGACTAGAACGACGGGATTATCGCGCCAGGC
GAAGGGATTGTTTTTTGCCTTCTTAAGCTGCTTCTTGCTCTTTGCTCCTC
CAGTGGAGGGGAGAACGGCAGATTCTCCTCTTTCTTCTCCTCCTGCTCCT
CCTGCCGCTGCTGCTGCATCAGGACCAGCTCCCGTCTTCCTCTCGTGTGT
GCCCTTCTCCTTCTTATTGTTGTTATCATTTTTCTTCTTATTCTTATTTT
TATTGTTGGTGGTTGTAGACTTTGAAGTCAAAGAGGGAGGGGCGGTCAGA
GGACCGGACATGTTCCCATTCCCAACAGGGTGAATTTCTGGCACTATATC
TCCTGATTCCTCCGGCATGGACGATGGAGAAGGCGAGAAAGCTTTAGCTT
TAGCTATCTTTGTGGTCGTCGAGGAAGAAGAGGATGCAGAAAAGGATGAC
GGAGGAGGAAGGGTCGAAGAAGAGGAGGAGGCGGGCTTACAGCTGCTGCT
GCTGCTGCCTTTTTCCACAGCAGAGAAGGTGGAGGGACTAGTGGTACCAG
GTTTACCTACTGCCGTAGCTGCTGAT
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protein sequence of jgi.p|Nanoce1779_2|602398

>mRNA_8071-protein ID=mRNA_8071-protein|Name=jgi.p|Nanoce1779_2|602398|organism=Nannochloropsis oceanica|type=polypeptide|length=109bp
MSISKTRTTGLSRQAKGLFFAFLSCFLLFAPPVEGRTADSPLSSPPAPPA
AAAASGPAPVFLSCVPFSFLLLLSFFFLFLFLLLVVVDFEVKEGGAVRGP
DMFPFPTG*
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mRNA from alignment at scaffold_25:83926..84851+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8071 ID=mRNA_8071|Name=jgi.p|Nanoce1779_2|602398|organism=Nannochloropsis oceanica|type=mRNA|length=926bp|location=Sequence derived from alignment at scaffold_25:83926..84851+ (Nannochloropsis oceanica)
CTCTTTCTCTTTCTCTTTCTCCTCCTTCTCTACCTCCTCCTCCACCACCA
CCACCGTTACCACCGCCGCCTCCTGTACTTTTCCCTCCTTTCTTCTTTTT
CTGCTGCTGCGACTGTTGCTGCCGTCCCTCCTGCTGCTGCTGCGGAAGCG
GCTGCTGCTCTTGATTCCTATTTCCTTTCGGAGGACCAGAAGCTTCCGGC
GGCAAAAGCCCAGGAGGGGCTTTACCTCTCAAGTAGTCTTCAAGGGCGGG
CGCAACGGTAGCCACATCCAAGCCGTGCTGCCGACAAAATGCCTTCACAG
CAGGGGCCAGACGCTGCCCTTCCCTCAGTTCCAAGTTCTCGGTCTGGGTG
GAAGAAATGTCAATCTCGAAGACTAGAACGACGGGATTATCGCGCCAGGC
GAAGGGATTGTTTTTTGCCTTCTTAAGCTGCTTCTTGCTCTTTGCTCCTC
CAGTGGAGGGGAGAACGGCAGATTCTCCTCTTTCTTCTCCTCCTGCTCCT
CCTGCCGCTGCTGCTGCATCAGGACCAGCTCCCGTCTTCCTCTCGTGTGT
GCCCTTCTCCTTCTTATTGTTGTTATCATTTTTCTTCTTATTCTTATTTT
TATTGTTGGTGGTTGTAGACTTTGAAGTCAAAGAGGGAGGGGCGGTCAGA
GGACCGGACATGTTCCCATTCCCAACAGGGTGAATTTCTGGCACTATATC
TCCTGATTCCTCCGGCATGGACGATGGAGAAGGCGAGAAAGCTTTAGCTT
TAGCTATCTTTGTGGTCGTCGAGGAAGAAGAGGATGCAGAAAAGGATGAC
GGAGGAGGAAGGGTCGAAGAAGAGGAGGAGGCGGGCTTACAGCTGCTGCT
GCTGCTGCCTTTTTCCACAGCAGAGAAGGTGGAGGGACTAGTGGTACCAG
GTTTACCTACTGCCGTAGCTGCTGAT
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Coding sequence (CDS) from alignment at scaffold_25:83926..84851+

>mRNA_8071 ID=mRNA_8071|Name=jgi.p|Nanoce1779_2|602398|organism=Nannochloropsis oceanica|type=CDS|length=327bp|location=Sequence derived from alignment at scaffold_25:83926..84851+ (Nannochloropsis oceanica)
ATGTCAATCTCGAAGACTAGAACGACGGGATTATCGCGCCAGGCGAAGGG
ATTGTTTTTTGCCTTCTTAAGCTGCTTCTTGCTCTTTGCTCCTCCAGTGG
AGGGGAGAACGGCAGATTCTCCTCTTTCTTCTCCTCCTGCTCCTCCTGCC
GCTGCTGCTGCATCAGGACCAGCTCCCGTCTTCCTCTCGTGTGTGCCCTT
CTCCTTCTTATTGTTGTTATCATTTTTCTTCTTATTCTTATTTTTATTGT
TGGTGGTTGTAGACTTTGAAGTCAAAGAGGGAGGGGCGGTCAGAGGACCG
GACATGTTCCCATTCCCAACAGGGTGA
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Synonyms
Publications