jgi.p|Nanoce1779_2|602396, mRNA_8070 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|602396
Unique NamemRNA_8070
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1310
Alignment locationscaffold_25:82075..83384 +

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Properties
Property NameValue
TranscriptId602482
TrackFilteredModels2
ProteinId602396
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_25supercontigscaffold_25:82075..83384 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|602396gene_8070Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|602396mRNA_8070-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8070CDS_8070Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8070 ID=mRNA_8070|Name=jgi.p|Nanoce1779_2|602396|organism=Nannochloropsis oceanica|type=mRNA|length=1310bp
AGACACACTAAAGTATAGGAACTATAGGAAGGACATGATCACCCTAGGAC
GGATGGCATCACGGCCATGGCAGCAGCAACATGTTATCACCACCGGCAGC
AGAAGTTGGGGCCGGAGCCCCAGCACCAGGAGCTGTGGCAGCCGCCCCGT
CCCACCGACATGCGTCTGTCGGAGACCTCTCCAGACGGCCTTCGGCCCCC
CCAAATCAAACCCTTCTACGGTGAAAAGCTTACTCCTTCAGCAAACCCAC
AAGCGCAGCTTCAGTCATAGTACGTAGATAAGTGGTCAAACCTATACACC
GCTATGTTTTGCGTATCCCTAGAATCAGACAGCAAGGGACTGGAAGGCGG
CTATGACATGCCTTGCAGCACTAACAGTATAATCCTAGCAATTCAGATGT
TATTGGCAGATTTGATCCGTACTCACTTTTCGTTTACGATTAACCCGTCC
ACTAATGCTTCAAATTTCAATTATTATCCCGCGTCCACCGTAATTTATGC
CCTCCATTCTTCCTCAACCAACACACAAAACAGACGCTGCTCGCGCCGTC
CAAGCACGCGACCTCTCCGAGAAGAACAAACGCCTTGGCCTGTACGCTAT
CTCCATCGTCATTGCTGTCACAGGCATCAGCTATGCCTCTGTCCCTCTCT
ACAAAGTTTTCTGTCAAGCCACCGGCTTCGGGGGCACGACCAAGCGAGTC
GATTCCCTCGAGTCTGTTGTCGGGACAGCACCAGCAGATAAAGTCAGACC
CATCAAAATTTTGTTTAATGCTGACGTGTCTGATACTACCCCTTGGAAAT
TTTATCCAACCCAACCTGACATTTTGGTGGTGCCTGGCGAGACTGCCCTA
GCGTTTTTCACCGTCAAGAACAAAACTGACAAGGCAGTGATTGGTGTGGC
TACTTATAACGTTTTTCCGCCCAAGGCTGGCCTGTACTTCAATAAGATTC
AGTGTTTTTGCTTCGATGAGCAGAGACTTAAGCCGAAAGAAGAGGTGGAC
ATGCCGGTGTTTTTTTTTGTGGACCCGGAGATGTTGAATGACCCGAGCAT
GGAGAACGTGCACGAGATTACCTTGAGCTACACCTTTTTCAAGACGGACG
AGGACAATGAGGAGGAAGTGCAGGAATTGCTGAGGAAGAATGTGAATTAT
CCCGGTGCAGTGGGGGGAGGGCATGGGAAGGTGGGAGGACCACCCCCTCC
TCCTGCTGCAGCTGCTGCTGCTTCGGCTACTGCAGTGTCGGTGTGAGGGA
AAATAGAGAACATGTAAAATGCGGGCGGTAAAAGAAATCACAATACAAAA
ATTGTCAATG
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protein sequence of jgi.p|Nanoce1779_2|602396

>mRNA_8070-protein ID=mRNA_8070-protein|Name=jgi.p|Nanoce1779_2|602396|organism=Nannochloropsis oceanica|type=polypeptide|length=250bp
MPSILPQPTHKTDAARAVQARDLSEKNKRLGLYAISIVIAVTGISYASVP
LYKVFCQATGFGGTTKRVDSLESVVGTAPADKVRPIKILFNADVSDTTPW
KFYPTQPDILVVPGETALAFFTVKNKTDKAVIGVATYNVFPPKAGLYFNK
IQCFCFDEQRLKPKEEVDMPVFFFVDPEMLNDPSMENVHEITLSYTFFKT
DEDNEEEVQELLRKNVNYPGAVGGGHGKVGGPPPPPAAAAAASATAVSV*
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mRNA from alignment at scaffold_25:82075..83384+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8070 ID=mRNA_8070|Name=jgi.p|Nanoce1779_2|602396|organism=Nannochloropsis oceanica|type=mRNA|length=1310bp|location=Sequence derived from alignment at scaffold_25:82075..83384+ (Nannochloropsis oceanica)
AGACACACTAAAGTATAGGAACTATAGGAAGGACATGATCACCCTAGGAC
GGATGGCATCACGGCCATGGCAGCAGCAACATGTTATCACCACCGGCAGC
AGAAGTTGGGGCCGGAGCCCCAGCACCAGGAGCTGTGGCAGCCGCCCCGT
CCCACCGACATGCGTCTGTCGGAGACCTCTCCAGACGGCCTTCGGCCCCC
CCAAATCAAACCCTTCTACGGTGAAAAGCTTACTCCTTCAGCAAACCCAC
AAGCGCAGCTTCAGTCATAGTACGTAGATAAGTGGTCAAACCTATACACC
GCTATGTTTTGCGTATCCCTAGAATCAGACAGCAAGGGACTGGAAGGCGG
CTATGACATGCCTTGCAGCACTAACAGTATAATCCTAGCAATTCAGATGT
TATTGGCAGATTTGATCCGTACTCACTTTTCGTTTACGATTAACCCGTCC
ACTAATGCTTCAAATTTCAATTATTATCCCGCGTCCACCGTAATTTATGC
CCTCCATTCTTCCTCAACCAACACACAAAACAGACGCTGCTCGCGCCGTC
CAAGCACGCGACCTCTCCGAGAAGAACAAACGCCTTGGCCTGTACGCTAT
CTCCATCGTCATTGCTGTCACAGGCATCAGCTATGCCTCTGTCCCTCTCT
ACAAAGTTTTCTGTCAAGCCACCGGCTTCGGGGGCACGACCAAGCGAGTC
GATTCCCTCGAGTCTGTTGTCGGGACAGCACCAGCAGATAAAGTCAGACC
CATCAAAATTTTGTTTAATGCTGACGTGTCTGATACTACCCCTTGGAAAT
TTTATCCAACCCAACCTGACATTTTGGTGGTGCCTGGCGAGACTGCCCTA
GCGTTTTTCACCGTCAAGAACAAAACTGACAAGGCAGTGATTGGTGTGGC
TACTTATAACGTTTTTCCGCCCAAGGCTGGCCTGTACTTCAATAAGATTC
AGTGTTTTTGCTTCGATGAGCAGAGACTTAAGCCGAAAGAAGAGGTGGAC
ATGCCGGTGTTTTTTTTTGTGGACCCGGAGATGTTGAATGACCCGAGCAT
GGAGAACGTGCACGAGATTACCTTGAGCTACACCTTTTTCAAGACGGACG
AGGACAATGAGGAGGAAGTGCAGGAATTGCTGAGGAAGAATGTGAATTAT
CCCGGTGCAGTGGGGGGAGGGCATGGGAAGGTGGGAGGACCACCCCCTCC
TCCTGCTGCAGCTGCTGCTGCTTCGGCTACTGCAGTGTCGGTGTGAGGGA
AAATAGAGAACATGTAAAATGCGGGCGGTAAAAGAAATCACAATACAAAA
ATTGTCAATG
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Coding sequence (CDS) from alignment at scaffold_25:82075..83384+

>mRNA_8070 ID=mRNA_8070|Name=jgi.p|Nanoce1779_2|602396|organism=Nannochloropsis oceanica|type=CDS|length=750bp|location=Sequence derived from alignment at scaffold_25:82075..83384+ (Nannochloropsis oceanica)
ATGCCCTCCATTCTTCCTCAACCAACACACAAAACAGACGCTGCTCGCGC
CGTCCAAGCACGCGACCTCTCCGAGAAGAACAAACGCCTTGGCCTGTACG
CTATCTCCATCGTCATTGCTGTCACAGGCATCAGCTATGCCTCTGTCCCT
CTCTACAAAGTTTTCTGTCAAGCCACCGGCTTCGGGGGCACGACCAAGCG
AGTCGATTCCCTCGAGTCTGTTGTCGGGACAGCACCAGCAGATAAAGTCA
GACCCATCAAAATTTTGTTTAATGCTGACGTGTCTGATACTACCCCTTGG
AAATTTTATCCAACCCAACCTGACATTTTGGTGGTGCCTGGCGAGACTGC
CCTAGCGTTTTTCACCGTCAAGAACAAAACTGACAAGGCAGTGATTGGTG
TGGCTACTTATAACGTTTTTCCGCCCAAGGCTGGCCTGTACTTCAATAAG
ATTCAGTGTTTTTGCTTCGATGAGCAGAGACTTAAGCCGAAAGAAGAGGT
GGACATGCCGGTGTTTTTTTTTGTGGACCCGGAGATGTTGAATGACCCGA
GCATGGAGAACGTGCACGAGATTACCTTGAGCTACACCTTTTTCAAGACG
GACGAGGACAATGAGGAGGAAGTGCAGGAATTGCTGAGGAAGAATGTGAA
TTATCCCGGTGCAGTGGGGGGAGGGCATGGGAAGGTGGGAGGACCACCCC
CTCCTCCTGCTGCAGCTGCTGCTGCTTCGGCTACTGCAGTGTCGGTGTGA
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Synonyms
Publications