jgi.p|Nanoce1779_2|142437, mRNA_807 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|142437
Unique NamemRNA_807
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length991
Alignment locationscaffold_2:475214..476549 -

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Properties
Property NameValue
TranscriptId142523
TrackFilteredModels2
ProteinId142437
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:475214..476549 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|142437gene_807Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|142437mRNA_807-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_807CDS_807Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_807 ID=mRNA_807|Name=jgi.p|Nanoce1779_2|142437|organism=Nannochloropsis oceanica|type=mRNA|length=991bp
TGCTCAGTGCAAGGCTATCAACGAGGATGGTAATGATGAGTCGCTCAAAT
TCAAATAGTACACGCCCCGTGAAACCGTGTAGTAGGAGTTGTTACGGCGC
TCCGTGGCAGAGGTGAGGCGCGTTTCAAAATTTGAGGAGTTGGGATTTGA
GATCAAGGGCGAGGACGTGAAGGAGCGCGTGGGGAAGCACTCAATCAAAA
GCACCATCCAACCGGATGAAGCATCCTTTTTGCTTTACTACGTGATAACT
CCAGTAAATTAATGCATGGCTCCCAAAAACGTGCCTTGGCGGCATCAGTG
CCATGAGTCGGCTCGCTGCGAAGACACGGAGGAAAGCTACCATTACGTTT
GCCCATCGGGGTTTGAAGGAGAGCAAGGGACAGGTCAAGGCCGCTGCACC
GGAGCCATTTCCACGCAGTCCTGCTGTGGTATCGTGGGTAGAGATGCCTG
TAAACATAGCTTTATATGCACCCATTCAACACCGATTGGGAAGAACGACA
ATTGCAAAGGCCAGTGTGTGGAGAACACCAACTGTACCCTTATCTCCCAG
GAGCTTGATTTGTATGGCTACGTTTGCCCAGACGGGTACTTCGGGACTGC
GCGGCATTGTCCCCGGGGTCGTGAGCCTCCGCCTACTTTCTTTGACGAGG
CTGGAAATTTGTTGGGGAAGATGCAGGCGGATGAATATTGTGGGTGTCAA
CCCAAGGTCACGGATTGGTGCATGGGCAAAGATTGTGGGGAACACGCCGT
GTGTCAAAATGCAGCCAACTCCCACCGCTGCGTGTGCGATGCAGGCTACG
TAGAAGAACAGGGTTGATGTGTGGATAAGGCGGGTGTGCCGTTGTTGTTG
GAAGGCCCGGAGGTAGTGACGGTGGTGCAGGGGGACGCTTACGAAGATCG
CTTAGTCCGCATCATGGACACTAATGAGATGTTAGCCGAGCCAAGGTACA
TCTCTATCTCCTACGACTCCCCCAGCTTGAATGCCGATACC
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protein sequence of jgi.p|Nanoce1779_2|142437

>mRNA_807-protein ID=mRNA_807-protein|Name=jgi.p|Nanoce1779_2|142437|organism=Nannochloropsis oceanica|type=polypeptide|length=184bp
MAPKNVPWRHQCHESARCEDTEESYHYVCPSGFEGEQGTGQGRCTGAIST
QSCCGIVGRDACKHSFICTHSTPIGKNDNCKGQCVENTNCTLISQELDLY
GYVCPDGYFGTARHCPRGREPPPTFFDEAGNLLGKMQADEYCGCQPKVTD
WCMGKDCGEHAVCQNAANSHRCVCDAGYVEEQG*
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mRNA from alignment at scaffold_2:475214..476549-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_807 ID=mRNA_807|Name=jgi.p|Nanoce1779_2|142437|organism=Nannochloropsis oceanica|type=mRNA|length=1336bp|location=Sequence derived from alignment at scaffold_2:475214..476549- (Nannochloropsis oceanica)
TGCTCAGTGCAAGGCTATCAACGAGGATGGTAATGATGAGTCGCTCAAAT
TCAAATAGTACACGCCCCGTGAAACCGTGTAGTAGGAGTTGTTACGGCGC
TCCGTGGCAGAGGTGAGGCGCGTTTCAAAATTTGAGGAGTTGGGATTTGA
GATCAAGGGCGAGGACGTGAAGGAGCGCGTGGGGAAGCACTCAATCAAAA
GCACCATCCAACCGGATGAAGCATCCTTTTTGCTTTACTACGTGATAACT
CCAGTAAATTAATGCATGGCTCCCAAAAACGTGCCTTGGCGGCATCAGTG
CCATGAGTCGGCTCGCTGCGAAGACACGGAGGAAAGCTACCATTACGTTT
GCCCATCGGGGTTTGAAGGAGAGCAAGGGACAGGTCAAGGCCGCTGCACC
GGAGCCATTTCCACGCAGTCCTGCTGTGGTATCGTGGGTAGAGATGCCTG
TAAACATAGCTTTATATGCACCCATTCAACACCGATTGGGAAGAACGACA
ATTGCAAAGGCCAGTGTGTGGAGAACACCAACTGTACCCTTATCTCCCAG
GAGCTTGATTTGTATGGCTACGTTTGCCCAGACGGGTACTTCGGGACTGC
GCGGCATTGTCCCCGGGGTCGTGAGCCTCCGCCTACTTTCTTTGACGAGG
CTGGAAATTTGTTGGGGAAGATGCAGGCGGATGAATATTGTGGGTGTCAA
CCCAAGGTAAGCAGAAGAGGAGGGAGGATGTCACTGCCCTGCTTGCTTGA
TTCAATCCTGTAATTTTTTCATGTAAGGCAGTTTTCTTGTATTATGACGC
GTCGTCTCCTTGAATTTCACGACACTTACTGCATTCCTCCCTCCCTCCCC
TTTACTTCCTCCCTTGCCCTCCTGACAGGTCACGGATTGGTGCATGGGCA
AAGATTGTGGGGAACACGCCGTGTGTCAAAATGCAGCCAACTCCCACCGC
TGCGTGTGCGATGCAGGCTACGTAGAAGAACAGGGTTGATGTGTGGATAA
GGCGGGTGTGCCGTTGTTGTTGGAAGGCCCGGAGGTAGTGACGGTGGTGC
AGGGGGACGCTTACGAAGATCGCTTAGTCCGCATCATGGACACTAATGAG
ATGTTAGCCGAGCCAAGGTACGTGAGGTGTAAAAAAAAGGCGAAAGAATT
GTTAATGCTTGGAAATCCCATTCCTTGCAGTAGACCCAGTAGCTGCAGCA
GTTGCAGCGGCAAGAACATCATTATCACCTTTCACCCCCCTCCCTCCCAC
CCTCCCTCCCTCCCTCCCTCCTCCCTCCTCCTGCCGTTAGGTACATCTCT
ATCTCCTACGACTCCCCCAGCTTGAATGCCGATACC
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Coding sequence (CDS) from alignment at scaffold_2:475214..476549-

>mRNA_807 ID=mRNA_807|Name=jgi.p|Nanoce1779_2|142437|organism=Nannochloropsis oceanica|type=CDS|length=1104bp|location=Sequence derived from alignment at scaffold_2:475214..476549- (Nannochloropsis oceanica)
GTCACGGATTGGTGCATGGGCAAAGATTGTGGGGAACACGCCGTGTGTCA
AAATGCAGCCAACTCCCACCGCTGCGTGTGCGATGCAGGCTACGTAGAAG
AACAGGGTTGAATGGCTCCCAAAAACGTGCCTTGGCGGCATCAGTGCCAT
GAGTCGGCTCGCTGCGAAGACACGGAGGAAAGCTACCATTACGTTTGCCC
ATCGGGGTTTGAAGGAGAGCAAGGGACAGGTCAAGGCCGCTGCACCGGAG
CCATTTCCACGCAGTCCTGCTGTGGTATCGTGGGTAGAGATGCCTGTAAA
CATAGCTTTATATGCACCCATTCAACACCGATTGGGAAGAACGACAATTG
CAAAGGCCAGTGTGTGGAGAACACCAACTGTACCCTTATCTCCCAGGAGC
TTGATTTGTATGGCTACGTTTGCCCAGACGGGTACTTCGGGACTGCGCGG
CATTGTCCCCGGGGTCGTGAGCCTCCGCCTACTTTCTTTGACGAGGCTGG
AAATTTGTTGGGGAAGATGCAGGCGGATGAATATTGTGGGTGTCAACCCA
AGGTCACGGATTGGTGCATGGGCAAAGATTGTGGGGAACACGCCGTGTGT
CAAAATGCAGCCAACTCCCACCGCTGCGTGTGCGATGCAGGCTACGTAGA
AGAACAGGGTTGAATGGCTCCCAAAAACGTGCCTTGGCGGCATCAGTGCC
ATGAGTCGGCTCGCTGCGAAGACACGGAGGAAAGCTACCATTACGTTTGC
CCATCGGGGTTTGAAGGAGAGCAAGGGACAGGTCAAGGCCGCTGCACCGG
AGCCATTTCCACGCAGTCCTGCTGTGGTATCGTGGGTAGAGATGCCTGTA
AACATAGCTTTATATGCACCCATTCAACACCGATTGGGAAGAACGACAAT
TGCAAAGGCCAGTGTGTGGAGAACACCAACTGTACCCTTATCTCCCAGGA
GCTTGATTTGTATGGCTACGTTTGCCCAGACGGGTACTTCGGGACTGCGC
GGCATTGTCCCCGGGGTCGTGAGCCTCCGCCTACTTTCTTTGACGAGGCT
GGAAATTTGTTGGGGAAGATGCAGGCGGATGAATATTGTGGGTGTCAACC
CAAG
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Synonyms
Publications