jgi.p|Nanoce1779_2|602392, mRNA_8069 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|602392
Unique NamemRNA_8069
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length835
Alignment locationscaffold_25:80734..81762 -

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Properties
Property NameValue
TranscriptId602478
TrackFilteredModels2
ProteinId602392
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_25supercontigscaffold_25:80734..81762 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|602392gene_8069Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|602392mRNA_8069-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8069CDS_8069Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8069 ID=mRNA_8069|Name=jgi.p|Nanoce1779_2|602392|organism=Nannochloropsis oceanica|type=mRNA|length=835bp
AGGGCATCCTTTCCCAATCAAGCAGCAGTGTCATCATGCGTCGCGGGGTG
GGCGTCAAGTATATCAAGAGGAAGGAGATCGTAACGGAGGCATTCACCAC
CCTCGGCAAGGAGCTGCAAGAGGAAAACATCCAGCACGTCGCCAGCCTCA
TGGCCACCTTCAAGGATTCCTTGGAAGATTTTGCTCGAAAATATAAGAAA
GATATCAATGCCAATCCGGTCCTGCGCGCGGAGTTCCACAAAATGTGCAC
CAGTATTGGCGTCGACCCCCTCGCCTCCAACAAGGGCCTCTGGACTCAAC
TTTTGGGAGTTGGGGACTTCTACTATGAACTCGCCGTCCAAGTTATCGAA
ATATGCCTCATTACCCGACCATTGAACGGAGGTCTCATTTCCCTTCCGGA
CCTGACCCAGCGCGTGCGAGTCCGGCGGAAACTCGACCAGATCTCCCAGG
ACGACATCAAAACTGCCATACGCAAGGTTCACCTATTGGGGGCAGGATTT
TCCGTTCTTAAATCTGGAAGGACAATCTTGGTCGTTTCCGTTCCGTTGGA
ACTCTCCTCGGATCATTCGACCATTCTTGAGGTAGCACAAGGCAAAGCTT
CGCATGTGTCTATGTCCCAAATTATCACTCAATTAAAGTGGGAGGAACAA
CGAGTTAAGATCGCCCTGGATCTGATGATGCAGGGAGGGATGGTTTGGGT
CGACGAACAGGGAGGGAAGGAAAGAGGGACGGAGGGGGAGCCGGTGTATT
GGTTTCCATCGTTGTGGCAGCAGGAGCGGATGGAGGAGGCGGAAGGGGAA
GGGGAGTAGAAGGAAGGGGGAAAAGAGAGAAATTG
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protein sequence of jgi.p|Nanoce1779_2|602392

>mRNA_8069-protein ID=mRNA_8069-protein|Name=jgi.p|Nanoce1779_2|602392|organism=Nannochloropsis oceanica|type=polypeptide|length=258bp
MRRGVGVKYIKRKEIVTEAFTTLGKELQEENIQHVASLMATFKDSLEDFA
RKYKKDINANPVLRAEFHKMCTSIGVDPLASNKGLWTQLLGVGDFYYELA
VQVIEICLITRPLNGGLISLPDLTQRVRVRRKLDQISQDDIKTAIRKVHL
LGAGFSVLKSGRTILVVSVPLELSSDHSTILEVAQGKASHVSMSQIITQL
KWEEQRVKIALDLMMQGGMVWVDEQGGKERGTEGEPVYWFPSLWQQERME
EAEGEGE*
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mRNA from alignment at scaffold_25:80734..81762-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8069 ID=mRNA_8069|Name=jgi.p|Nanoce1779_2|602392|organism=Nannochloropsis oceanica|type=mRNA|length=1029bp|location=Sequence derived from alignment at scaffold_25:80734..81762- (Nannochloropsis oceanica)
AGGGCATCCTTTCCCAATCAAGCAGCAGTGTCATCATGCGTCGCGGGGTG
GGCGTCAAGTATATCAAGAGGAAGGAGATCGTAACGGAGGCATTCACCAC
CCTCGGCAAGGAGCTGCAAGAGGAAAACATCCAGCACGTCGCCAGCCTCA
TGGCCACCTTCAAGGATTCCTTGGAAGATTTTGCTCGAAAATATAAGAAA
GATATCAATGCCAATCCGGTCCTGCGCGCGGAGGTACGAGGGAGTGTGCT
GGGGTAAAAAAGGGAAGGAGGAGAGGGGAGGCCGACGCCCGTATGTTTGC
ACATCTTTAAGGCACACTTTCACCTGGTGCTTTTCAACAAAACTGCACAC
CTAAACCTTGGCATCCTCTTAGTATCATTGCTTATCTTTTTATACCTTTT
TCTCTCCCTCGCTACCTCCATTCCTAGTTCCACAAAATGTGCACCAGTAT
TGGCGTCGACCCCCTCGCCTCCAACAAGGGCCTCTGGACTCAACTTTTGG
GAGTTGGGGACTTCTACTATGAACTCGCCGTCCAAGTTATCGAAATATGC
CTCATTACCCGACCATTGAACGGAGGTCTCATTTCCCTTCCGGACCTGAC
CCAGCGCGTGCGAGTCCGGCGGAAACTCGACCAGATCTCCCAGGACGACA
TCAAAACTGCCATACGCAAGGTTCACCTATTGGGGGCAGGATTTTCCGTT
CTTAAATCTGGAAGGACAATCTTGGTCGTTTCCGTTCCGTTGGAACTCTC
CTCGGATCATTCGACCATTCTTGAGGTAGCACAAGGCAAAGCTTCGCATG
TGTCTATGTCCCAAATTATCACTCAATTAAAGTGGGAGGAACAACGAGTT
AAGATCGCCCTGGATCTGATGATGCAGGGAGGGATGGTTTGGGTCGACGA
ACAGGGAGGGAAGGAAAGAGGGACGGAGGGGGAGCCGGTGTATTGGTTTC
CATCGTTGTGGCAGCAGGAGCGGATGGAGGAGGCGGAAGGGGAAGGGGAG
TAGAAGGAAGGGGGAAAAGAGAGAAATTG
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Coding sequence (CDS) from alignment at scaffold_25:80734..81762-

>mRNA_8069 ID=mRNA_8069|Name=jgi.p|Nanoce1779_2|602392|organism=Nannochloropsis oceanica|type=CDS|length=1548bp|location=Sequence derived from alignment at scaffold_25:80734..81762- (Nannochloropsis oceanica)
TTCCACAAAATGTGCACCAGTATTGGCGTCGACCCCCTCGCCTCCAACAA
GGGCCTCTGGACTCAACTTTTGGGAGTTGGGGACTTCTACTATGAACTCG
CCGTCCAAGTTATCGAAATATGCCTCATTACCCGACCATTGAACGGAGGT
CTCATTTCCCTTCCGGACCTGACCCAGCGCGTGCGAGTCCGGCGGAAACT
CGACCAGATCTCCCAGGACGACATCAAAACTGCCATACGCAAGGTTCACC
TATTGGGGGCAGGATTTTCCGTTCTTAAATCTGGAAGGACAATCTTGGTC
GTTTCCGTTCCGTTGGAACTCTCCTCGGATCATTCGACCATTCTTGAGGT
AGCACAAGGCAAAGCTTCGCATGTGTCTATGTCCCAAATTATCACTCAAT
TAAAGTGGGAGGAACAACGAGTTAAGATCGCCCTGGATCTGATGATGCAG
GGAGGGATGGTTTGGGTCGACGAACAGGGAGGGAAGGAAAGAGGGACGGA
GGGGGAGCCGGTGTATTGGTTTCCATCGTTGTGGCAGCAGGAGCGGATGG
AGGAGGCGGAAGGGGAAGGGGAGTAGATGCGTCGCGGGGTGGGCGTCAAG
TATATCAAGAGGAAGGAGATCGTAACGGAGGCATTCACCACCCTCGGCAA
GGAGCTGCAAGAGGAAAACATCCAGCACGTCGCCAGCCTCATGGCCACCT
TCAAGGATTCCTTGGAAGATTTTGCTCGAAAATATAAGAAAGATATCAAT
GCCAATCCGGTCCTGCGCGCGGAGTTCCACAAAATGTGCACCAGTATTGG
CGTCGACCCCCTCGCCTCCAACAAGGGCCTCTGGACTCAACTTTTGGGAG
TTGGGGACTTCTACTATGAACTCGCCGTCCAAGTTATCGAAATATGCCTC
ATTACCCGACCATTGAACGGAGGTCTCATTTCCCTTCCGGACCTGACCCA
GCGCGTGCGAGTCCGGCGGAAACTCGACCAGATCTCCCAGGACGACATCA
AAACTGCCATACGCAAGGTTCACCTATTGGGGGCAGGATTTTCCGTTCTT
AAATCTGGAAGGACAATCTTGGTCGTTTCCGTTCCGTTGGAACTCTCCTC
GGATCATTCGACCATTCTTGAGGTAGCACAAGGCAAAGCTTCGCATGTGT
CTATGTCCCAAATTATCACTCAATTAAAGTGGGAGGAACAACGAGTTAAG
ATCGCCCTGGATCTGATGATGCAGGGAGGGATGGTTTGGGTCGACGAACA
GGGAGGGAAGGAAAGAGGGACGGAGGGGGAGCCGGTGTATTGGTTTCCAT
CGTTGTGGCAGCAGGAGCGGATGGAGGAGGCGGAAGGGGAAGGGGAGTAG
ATGCGTCGCGGGGTGGGCGTCAAGTATATCAAGAGGAAGGAGATCGTAAC
GGAGGCATTCACCACCCTCGGCAAGGAGCTGCAAGAGGAAAACATCCAGC
ACGTCGCCAGCCTCATGGCCACCTTCAAGGATTCCTTGGAAGATTTTGCT
CGAAAATATAAGAAAGATATCAATGCCAATCCGGTCCTGCGCGCGGAG
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Synonyms
Publications