jgi.p|Nanoce1779_2|602390, mRNA_8068 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|602390
Unique NamemRNA_8068
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1124
Alignment locationscaffold_25:79635..80758 +

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Properties
Property NameValue
TranscriptId602476
TrackFilteredModels2
ProteinId602390
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_25supercontigscaffold_25:79635..80758 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|602390gene_8068Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|602390mRNA_8068-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8068CDS_8068Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8068 ID=mRNA_8068|Name=jgi.p|Nanoce1779_2|602390|organism=Nannochloropsis oceanica|type=mRNA|length=1124bp
ATCCACCCACTTTCCCAAAGCTGAGGGCACTATCACTACAACCTGGGGAA
GGAGATATGAGCCCCTTTACTCAGCAATAACCTCCCGTCCTTTGCCTGTC
CCTCCTACAGGCCATGGCGACAAAACCGTCACCACAACCCTTGCTACAGC
TATTCACTGTGCAAATTGAGGCTTTTGTGAGTCGGCATCAAGCAGCGACC
GATGAGCTCGAAGATATCCATATGAACGCGTGTATAGACGAAGCGCAAGC
GTGTGCCGAACGAAGAACCCTCTCTCCTTTTTTGCCCACCACAGCCACAG
ATTTGGCCACCATTTTCGAGGCTTTGCAAATAGGTCCTCGGCATATAATA
GTCGACTTGGGCTGTGGGGATGGACGGCCGCTGATTGCGGCGGCATTGCT
GCGTGGATGCCGTGGCTTGGGCGTGGACATATCCCAGGAGTGTATTGACC
TGGCCAGAACCATTGCTACGGAGGAAGGCTTGAGAGATAAGGTGAAATTC
TTTAGATTAGACCTGTTAGATGATCAAGATAAGGCGTTGCGGTTTTTAAT
AGCAGCGGTGGAGGCTCAAATGAGTGAGACGGGAGGAGGTGAGAAAGTCG
TAATTTTCCTATACATTTATCCCTCTTTACTTGAGCGGCTCGTGGAACTG
GTGAGGCGCTTGGCCTGTGCATGTCAAGGGGAAGGGAGGCAGAAAATGGT
ACAAGTTGTTACGCTGGCGTATCATTTTCGGGGCCCTCTCACCGAGACTG
TAGACTTGAATCAGGCGGGTGAGGGGAGAATTCATGTGCATAGGTTGAAC
AGGTGAAGTGAAGAGCAAAAGAATGAAAGCATTCATTATGTATATTTAAA
TTGTAGGGAGAAACACACCAGAGCTATTCGCTGACTTGACTTGCAGTCTT
TCAGCCGTAGCGGAGAAGGTGAAATAGAGGAACGCGTGCGAGGAGAGGGA
TCAATAATATGTGCACATTTTGTTATGGGACAATGAGATGAACGAAAATG
AAAAGTCAGGGGACTCTTAAACGGGGGGAAGGATCAAGAGCTAGTAGAAG
CAAGGGCATAGCATCTGTATGTACACATTTGGACTTTCTATTTTTCAAAC
AATTTCTCTCTTTTCCCCCTTCCT
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protein sequence of jgi.p|Nanoce1779_2|602390

>mRNA_8068-protein ID=mRNA_8068-protein|Name=jgi.p|Nanoce1779_2|602390|organism=Nannochloropsis oceanica|type=polypeptide|length=231bp
MATKPSPQPLLQLFTVQIEAFVSRHQAATDELEDIHMNACIDEAQACAER
RTLSPFLPTTATDLATIFEALQIGPRHIIVDLGCGDGRPLIAAALLRGCR
GLGVDISQECIDLARTIATEEGLRDKVKFFRLDLLDDQDKALRFLIAAVE
AQMSETGGGEKVVIFLYIYPSLLERLVELVRRLACACQGEGRQKMVQVVT
LAYHFRGPLTETVDLNQAGEGRIHVHRLNR*
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mRNA from alignment at scaffold_25:79635..80758+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8068 ID=mRNA_8068|Name=jgi.p|Nanoce1779_2|602390|organism=Nannochloropsis oceanica|type=mRNA|length=1124bp|location=Sequence derived from alignment at scaffold_25:79635..80758+ (Nannochloropsis oceanica)
ATCCACCCACTTTCCCAAAGCTGAGGGCACTATCACTACAACCTGGGGAA
GGAGATATGAGCCCCTTTACTCAGCAATAACCTCCCGTCCTTTGCCTGTC
CCTCCTACAGGCCATGGCGACAAAACCGTCACCACAACCCTTGCTACAGC
TATTCACTGTGCAAATTGAGGCTTTTGTGAGTCGGCATCAAGCAGCGACC
GATGAGCTCGAAGATATCCATATGAACGCGTGTATAGACGAAGCGCAAGC
GTGTGCCGAACGAAGAACCCTCTCTCCTTTTTTGCCCACCACAGCCACAG
ATTTGGCCACCATTTTCGAGGCTTTGCAAATAGGTCCTCGGCATATAATA
GTCGACTTGGGCTGTGGGGATGGACGGCCGCTGATTGCGGCGGCATTGCT
GCGTGGATGCCGTGGCTTGGGCGTGGACATATCCCAGGAGTGTATTGACC
TGGCCAGAACCATTGCTACGGAGGAAGGCTTGAGAGATAAGGTGAAATTC
TTTAGATTAGACCTGTTAGATGATCAAGATAAGGCGTTGCGGTTTTTAAT
AGCAGCGGTGGAGGCTCAAATGAGTGAGACGGGAGGAGGTGAGAAAGTCG
TAATTTTCCTATACATTTATCCCTCTTTACTTGAGCGGCTCGTGGAACTG
GTGAGGCGCTTGGCCTGTGCATGTCAAGGGGAAGGGAGGCAGAAAATGGT
ACAAGTTGTTACGCTGGCGTATCATTTTCGGGGCCCTCTCACCGAGACTG
TAGACTTGAATCAGGCGGGTGAGGGGAGAATTCATGTGCATAGGTTGAAC
AGGTGAAGTGAAGAGCAAAAGAATGAAAGCATTCATTATGTATATTTAAA
TTGTAGGGAGAAACACACCAGAGCTATTCGCTGACTTGACTTGCAGTCTT
TCAGCCGTAGCGGAGAAGGTGAAATAGAGGAACGCGTGCGAGGAGAGGGA
TCAATAATATGTGCACATTTTGTTATGGGACAATGAGATGAACGAAAATG
AAAAGTCAGGGGACTCTTAAACGGGGGGAAGGATCAAGAGCTAGTAGAAG
CAAGGGCATAGCATCTGTATGTACACATTTGGACTTTCTATTTTTCAAAC
AATTTCTCTCTTTTCCCCCTTCCT
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Coding sequence (CDS) from alignment at scaffold_25:79635..80758+

>mRNA_8068 ID=mRNA_8068|Name=jgi.p|Nanoce1779_2|602390|organism=Nannochloropsis oceanica|type=CDS|length=693bp|location=Sequence derived from alignment at scaffold_25:79635..80758+ (Nannochloropsis oceanica)
ATGGCGACAAAACCGTCACCACAACCCTTGCTACAGCTATTCACTGTGCA
AATTGAGGCTTTTGTGAGTCGGCATCAAGCAGCGACCGATGAGCTCGAAG
ATATCCATATGAACGCGTGTATAGACGAAGCGCAAGCGTGTGCCGAACGA
AGAACCCTCTCTCCTTTTTTGCCCACCACAGCCACAGATTTGGCCACCAT
TTTCGAGGCTTTGCAAATAGGTCCTCGGCATATAATAGTCGACTTGGGCT
GTGGGGATGGACGGCCGCTGATTGCGGCGGCATTGCTGCGTGGATGCCGT
GGCTTGGGCGTGGACATATCCCAGGAGTGTATTGACCTGGCCAGAACCAT
TGCTACGGAGGAAGGCTTGAGAGATAAGGTGAAATTCTTTAGATTAGACC
TGTTAGATGATCAAGATAAGGCGTTGCGGTTTTTAATAGCAGCGGTGGAG
GCTCAAATGAGTGAGACGGGAGGAGGTGAGAAAGTCGTAATTTTCCTATA
CATTTATCCCTCTTTACTTGAGCGGCTCGTGGAACTGGTGAGGCGCTTGG
CCTGTGCATGTCAAGGGGAAGGGAGGCAGAAAATGGTACAAGTTGTTACG
CTGGCGTATCATTTTCGGGGCCCTCTCACCGAGACTGTAGACTTGAATCA
GGCGGGTGAGGGGAGAATTCATGTGCATAGGTTGAACAGGTGA
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Synonyms
Publications