jgi.p|Nanoce1779_2|602389, mRNA_8067 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|602389
Unique NamemRNA_8067
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1038
Alignment locationscaffold_25:78383..79513 -

Link to JBrowse

Properties
Property NameValue
TranscriptId602475
TrackFilteredModels2
ProteinId602389
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_25supercontigscaffold_25:78383..79513 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|602389gene_8067Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|602389mRNA_8067-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8067CDS_8067Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8067 ID=mRNA_8067|Name=jgi.p|Nanoce1779_2|602389|organism=Nannochloropsis oceanica|type=mRNA|length=1038bp
AGGAAAATCAGTCGCCGCTGGAAGCATGAATGAAAAAGGCTGCTCTGGTG
ACGAGGCAATGGGCCTAAGAAAGCTGTCAGCAGAAGCACTTCAAAAGCGT
GAAGCAAGGGCAAGGAAGCGAGAGCAGGAGGTAGGCAGCGGCAGCAGCAG
CAGCAGCGCTGGGCAAGGCAACCAACGCTGCCCCCAGGACAAGACAAGCA
AGGAAGTCGGAGTGGAAGAAGACATGTGGACGAACTTTTACGACTTTTCG
TCCTTCTCCCTCAAAGTTCGAGAGGAATTTGGGGGCGAGGCGTGCGTTGG
CGGTACGCAGTGGCCAGGTGGTGCACGCGTGGCGCGATACCTCGACAACC
CCATCGTCTTTCCTGCAGGCGCTTTGAAGGGCAAAACCTTGCTGGACCTT
GGTTCAGGTTGTGGTTTGGTCGCAGCAGTAGCTGCTAAGCACGGTGCCTG
TGTACTAGCAGCAGAAAAGGATATTGTGATCCCTTTGCTTAAGGAAAACT
TGGCAAGCAATAATGTCTTGCTGGAGGAGGAGATGGAGCACAGCAACAAT
TTGTCGTCGTCCTTATCAGTACCCAGCACCACAACCTTCCAAGAGGGCAA
GGTGGCCGTGCAGGAATTTTACTGGGGGGCTGACGCGCACCACCCTCAGG
CACCGTTCGATATTGTGGTCGCCGCGGCTTGCTTGTACATGCCTAAGACG
GTGTTACTGCTCCTGCATACGCTTTGGAACGTTTCGGACGACAATAGTTT
AGTCATTTTGTGCTCTATTTTAGGGGCTAACACGCTGGAGGCATTTGTGA
GGGAAGTGGGGTCCTTCTTTGAAATAACTGCGTTGAACGACACGGATGGC
TGCGTAATTGGGACGAGCGAGGAAGGAAACTTGGCGTCAATTGACGTGGC
CACACGGGTTTTGGTGTTGCGGCGCAAGGCCCAACGTGGGGTGGGCTTGG
GATTAGACCTTGGGGGCTCGGATCGCCGTGAGTCTAGAAAAGTACCACTG
TAACACTTTTAAAATAAAGGAGCAATGAATGGACGAGG
back to top

protein sequence of jgi.p|Nanoce1779_2|602389

>mRNA_8067-protein ID=mRNA_8067-protein|Name=jgi.p|Nanoce1779_2|602389|organism=Nannochloropsis oceanica|type=polypeptide|length=326bp
MNEKGCSGDEAMGLRKLSAEALQKREARARKREQEVGSGSSSSSAGQGNQ
RCPQDKTSKEVGVEEDMWTNFYDFSSFSLKVREEFGGEACVGGTQWPGGA
RVARYLDNPIVFPAGALKGKTLLDLGSGCGLVAAVAAKHGACVLAAEKDI
VIPLLKENLASNNVLLEEEMEHSNNLSSSLSVPSTTTFQEGKVAVQEFYW
GADAHHPQAPFDIVVAAACLYMPKTVLLLLHTLWNVSDDNSLVILCSILG
ANTLEAFVREVGSFFEITALNDTDGCVIGTSEEGNLASIDVATRVLVLRR
KAQRGVGLGLDLGGSDRRESRKVPL*
back to top

mRNA from alignment at scaffold_25:78383..79513-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8067 ID=mRNA_8067|Name=jgi.p|Nanoce1779_2|602389|organism=Nannochloropsis oceanica|type=mRNA|length=1131bp|location=Sequence derived from alignment at scaffold_25:78383..79513- (Nannochloropsis oceanica)
AGGAAAATCAGTCGCCGCTGGAAGCATGAATGAAAAAGGCTGCTCTGGTG
ACGAGGCAATGGGCCTAAGAAAGCTGTCAGCAGAAGCACTTCAAAAGCGT
GAAGCAAGGGCAAGGAAGCGAGAGCAGGAGGTAGGCAGCGGCAGCAGCAG
CAGCAGCGCTGGGCAAGGCAACCAACGCTGCCCCCAGGACAAGACAAGCA
AGGAAGTCGGAGTGGAAGAAGACATGTGGACGAACTTTTACGACTTTTCG
TCCTTCTCCCTCAAAGTTCGAGAGGAATTTGGGGGCGAGGCGTGCGTTGG
CGGTACGCAGTGGCCAGGTAAGTCTGTCAGTCTGTGAAGAGCTAGAGTGC
ATCCTTGTGCAAAAGTCTTTACACTTTCTCTCTCCCTCCCACGTTCCAAT
GCTCTTACAGGTGGTGCACGCGTGGCGCGATACCTCGACAACCCCATCGT
CTTTCCTGCAGGCGCTTTGAAGGGCAAAACCTTGCTGGACCTTGGTTCAG
GTTGTGGTTTGGTCGCAGCAGTAGCTGCTAAGCACGGTGCCTGTGTACTA
GCAGCAGAAAAGGATATTGTGATCCCTTTGCTTAAGGAAAACTTGGCAAG
CAATAATGTCTTGCTGGAGGAGGAGATGGAGCACAGCAACAATTTGTCGT
CGTCCTTATCAGTACCCAGCACCACAACCTTCCAAGAGGGCAAGGTGGCC
GTGCAGGAATTTTACTGGGGGGCTGACGCGCACCACCCTCAGGCACCGTT
CGATATTGTGGTCGCCGCGGCTTGCTTGTACATGCCTAAGACGGTGTTAC
TGCTCCTGCATACGCTTTGGAACGTTTCGGACGACAATAGTTTAGTCATT
TTGTGCTCTATTTTAGGGGCTAACACGCTGGAGGCATTTGTGAGGGAAGT
GGGGTCCTTCTTTGAAATAACTGCGTTGAACGACACGGATGGCTGCGTAA
TTGGGACGAGCGAGGAAGGAAACTTGGCGTCAATTGACGTGGCCACACGG
GTTTTGGTGTTGCGGCGCAAGGCCCAACGTGGGGTGGGCTTGGGATTAGA
CCTTGGGGGCTCGGATCGCCGTGAGTCTAGAAAAGTACCACTGTAACACT
TTTAAAATAAAGGAGCAATGAATGGACGAGG
back to top

Coding sequence (CDS) from alignment at scaffold_25:78383..79513-

>mRNA_8067 ID=mRNA_8067|Name=jgi.p|Nanoce1779_2|602389|organism=Nannochloropsis oceanica|type=CDS|length=1956bp|location=Sequence derived from alignment at scaffold_25:78383..79513- (Nannochloropsis oceanica)
GTGGTGCACGCGTGGCGCGATACCTCGACAACCCCATCGTCTTTCCTGCA
GGCGCTTTGAAGGGCAAAACCTTGCTGGACCTTGGTTCAGGTTGTGGTTT
GGTCGCAGCAGTAGCTGCTAAGCACGGTGCCTGTGTACTAGCAGCAGAAA
AGGATATTGTGATCCCTTTGCTTAAGGAAAACTTGGCAAGCAATAATGTC
TTGCTGGAGGAGGAGATGGAGCACAGCAACAATTTGTCGTCGTCCTTATC
AGTACCCAGCACCACAACCTTCCAAGAGGGCAAGGTGGCCGTGCAGGAAT
TTTACTGGGGGGCTGACGCGCACCACCCTCAGGCACCGTTCGATATTGTG
GTCGCCGCGGCTTGCTTGTACATGCCTAAGACGGTGTTACTGCTCCTGCA
TACGCTTTGGAACGTTTCGGACGACAATAGTTTAGTCATTTTGTGCTCTA
TTTTAGGGGCTAACACGCTGGAGGCATTTGTGAGGGAAGTGGGGTCCTTC
TTTGAAATAACTGCGTTGAACGACACGGATGGCTGCGTAATTGGGACGAG
CGAGGAAGGAAACTTGGCGTCAATTGACGTGGCCACACGGGTTTTGGTGT
TGCGGCGCAAGGCCCAACGTGGGGTGGGCTTGGGATTAGACCTTGGGGGC
TCGGATCGCCGTGAGTCTAGAAAAGTACCACTGTAAATGAATGAAAAAGG
CTGCTCTGGTGACGAGGCAATGGGCCTAAGAAAGCTGTCAGCAGAAGCAC
TTCAAAAGCGTGAAGCAAGGGCAAGGAAGCGAGAGCAGGAGGTAGGCAGC
GGCAGCAGCAGCAGCAGCGCTGGGCAAGGCAACCAACGCTGCCCCCAGGA
CAAGACAAGCAAGGAAGTCGGAGTGGAAGAAGACATGTGGACGAACTTTT
ACGACTTTTCGTCCTTCTCCCTCAAAGTTCGAGAGGAATTTGGGGGCGAG
GCGTGCGTTGGCGGTACGCAGTGGCCAGGTGGTGCACGCGTGGCGCGATA
CCTCGACAACCCCATCGTCTTTCCTGCAGGCGCTTTGAAGGGCAAAACCT
TGCTGGACCTTGGTTCAGGTTGTGGTTTGGTCGCAGCAGTAGCTGCTAAG
CACGGTGCCTGTGTACTAGCAGCAGAAAAGGATATTGTGATCCCTTTGCT
TAAGGAAAACTTGGCAAGCAATAATGTCTTGCTGGAGGAGGAGATGGAGC
ACAGCAACAATTTGTCGTCGTCCTTATCAGTACCCAGCACCACAACCTTC
CAAGAGGGCAAGGTGGCCGTGCAGGAATTTTACTGGGGGGCTGACGCGCA
CCACCCTCAGGCACCGTTCGATATTGTGGTCGCCGCGGCTTGCTTGTACA
TGCCTAAGACGGTGTTACTGCTCCTGCATACGCTTTGGAACGTTTCGGAC
GACAATAGTTTAGTCATTTTGTGCTCTATTTTAGGGGCTAACACGCTGGA
GGCATTTGTGAGGGAAGTGGGGTCCTTCTTTGAAATAACTGCGTTGAACG
ACACGGATGGCTGCGTAATTGGGACGAGCGAGGAAGGAAACTTGGCGTCA
ATTGACGTGGCCACACGGGTTTTGGTGTTGCGGCGCAAGGCCCAACGTGG
GGTGGGCTTGGGATTAGACCTTGGGGGCTCGGATCGCCGTGAGTCTAGAA
AAGTACCACTGTAAATGAATGAAAAAGGCTGCTCTGGTGACGAGGCAATG
GGCCTAAGAAAGCTGTCAGCAGAAGCACTTCAAAAGCGTGAAGCAAGGGC
AAGGAAGCGAGAGCAGGAGGTAGGCAGCGGCAGCAGCAGCAGCAGCGCTG
GGCAAGGCAACCAACGCTGCCCCCAGGACAAGACAAGCAAGGAAGTCGGA
GTGGAAGAAGACATGTGGACGAACTTTTACGACTTTTCGTCCTTCTCCCT
CAAAGTTCGAGAGGAATTTGGGGGCGAGGCGTGCGTTGGCGGTACGCAGT
GGCCAG
back to top
Synonyms
Publications