jgi.p|Nanoce1779_2|602380, mRNA_8065 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|602380
Unique NamemRNA_8065
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length669
Alignment locationscaffold_25:73605..74727 +

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Properties
Property NameValue
TranscriptId602466
TrackFilteredModels2
ProteinId602380
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_25supercontigscaffold_25:73605..74727 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|602380gene_8065Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|602380mRNA_8065-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8065CDS_8065Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8065 ID=mRNA_8065|Name=jgi.p|Nanoce1779_2|602380|organism=Nannochloropsis oceanica|type=mRNA|length=669bp
ACAGGTTACGCCAATTGGTTGCACTTCGCCTCGAAGGGACAGCAGCGGCC
ATGGGAATCATCAAGCCCGGCAAGGTAGTGGTAGTGCTTGCCGGTCGCTA
TGCCGGTAAGAAGGCGGTGGTCGTCAAGGCCTTGGACGAAGGGTCAGCGG
ACAAGAAGTTCCCCCACGCCATCGTGTGTGGAATAGACGTCGCCCCCCGT
AAGGTCACGCGCACGATGAACAAGAAGACCATCAAGCGCAAGACGAAGGT
GAAACCTTTCATCAAGTCCTTGAACTACACCCATATCATGCCCACGCGGT
ATGCAGTGGATATAGACTTAAAGAAGGCGGAGGAGCAGACGGATGACAAG
AAAACCCTGAAGCGCGCGATTCGCAAGACCTTGGAAGAGCGCTACTTGAA
CCAAGCGGCCGTTGCAGCCAAGTCGGAGAGGAAGTCTCAGGGAACAAGCT
ACTTTTACAAGAAGCTGCGATTCTAAAGATTGGGAGGAAGGGAGGGTGGT
AAGCGGAGGAGGGAGAATGTTGTCTACTTCTTGTCTTCTTTTCGCCTCCA
GGGTAGGGAAGGTGGTTAGGTGTGCGTTTGAATCAGAGACCGGTAGAGCG
CGGCCTGAACGACTGAAGGGTGGGGAGGAGTACGACCAAAGGAAGAAATA
AAAGGTGGAAGCAACGAAA
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protein sequence of jgi.p|Nanoce1779_2|602380

>mRNA_8065-protein ID=mRNA_8065-protein|Name=jgi.p|Nanoce1779_2|602380|organism=Nannochloropsis oceanica|type=polypeptide|length=142bp
MGIIKPGKVVVVLAGRYAGKKAVVVKALDEGSADKKFPHAIVCGIDVAPR
KVTRTMNKKTIKRKTKVKPFIKSLNYTHIMPTRYAVDIDLKKAEEQTDDK
KTLKRAIRKTLEERYLNQAAVAAKSERKSQGTSYFYKKLRF*
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mRNA from alignment at scaffold_25:73605..74727+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8065 ID=mRNA_8065|Name=jgi.p|Nanoce1779_2|602380|organism=Nannochloropsis oceanica|type=mRNA|length=1123bp|location=Sequence derived from alignment at scaffold_25:73605..74727+ (Nannochloropsis oceanica)
ACAGGTTACGCCAATTGGTTGCACTTCGCCTCGAAGGGACAGCAGCGGCC
ATGGGAATGTACGTGTGAGGGGGTTGGAAGAAAGAAGGGGAGGAGATGGG
TGTGATCATGATGCGGACAGTGCTTGTGGACGACCACTCTGCATCAGCAG
GCATAGGCCCTGGCACATTTAATGCCACATGTGGCCCTATATGGGCGGCG
GGGCGGGTTTGGATGGAGGCGAGGGATGGCTGGGATTGCTAGGTTTTCCT
TGGTCGATGACGGAGGAGGAGGAGGAGGAGGAGTGGAGGACTAGTTGATG
TTGTCGGGTGGCTGGGATGGGTGCGCTGGGGTGGCTGCGCTTATGCAGTG
ACTGAACAGGGGTAGCATTTAAGCTCCCACAGTAGTTGTGCTTGCATTAT
TCCTGTGCTGTCTAGGTGCCTGTGGCTCTAGTGCCTTCTTTCAATGCCCT
TATATCTACTAATGACTCACCCTTTCTCTTTACAACCCTCCCCCCTAATT
CTAAAACAACAGCATCAAGCCCGGCAAGGTAGTGGTAGTGCTTGCCGGTC
GCTATGCCGGTAAGAAGGCGGTGGTCGTCAAGGCCTTGGACGAAGGGTCA
GCGGACAAGAAGTTCCCCCACGCCATCGTGTGTGGAATAGACGTCGCCCC
CCGTAAGGTCACGCGCACGATGAACAAGAAGACCATCAAGCGCAAGACGA
AGGTGAAACCTTTCATCAAGTCCTTGAACTACACCCATATCATGCCCACG
CGGTATGCAGTGGATATAGACTTAAAGAAGGCGGAGGAGCAGACGGATGA
CAAGAAAACCCTGAAGCGCGCGATTCGCAAGACCTTGGAAGAGCGCTACT
TGAACCAAGCGGCCGTTGCAGCCAAGTCGGAGAGGAAGTCTCAGGGAACA
AGCTACTTTTACAAGAAGCTGCGATTCTAAAGATTGGGAGGAAGGGAGGG
TGGTAAGCGGAGGAGGGAGAATGTTGTCTACTTCTTGTCTTCTTTTCGCC
TCCAGGGTAGGGAAGGTGGTTAGGTGTGCGTTTGAATCAGAGACCGGTAG
AGCGCGGCCTGAACGACTGAAGGGTGGGGAGGAGTACGACCAAAGGAAGA
AATAAAAGGTGGAAGCAACGAAA
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Coding sequence (CDS) from alignment at scaffold_25:73605..74727+

>mRNA_8065 ID=mRNA_8065|Name=jgi.p|Nanoce1779_2|602380|organism=Nannochloropsis oceanica|type=CDS|length=852bp|location=Sequence derived from alignment at scaffold_25:73605..74727+ (Nannochloropsis oceanica)
ATGGGAATCATCAAGCCCGGCAAGGTAGTGGTAGTGCTTGCCGGTCGCTA
TGCCGGTAAGAAGGCGGTGGTCGTCAAGGCCTTGGACGAAGGGTCAGCGG
ACAAGAAGTTCCCCCACGCCATCGTGTGTGGAATAGACGTCGCCCCCCGT
AAGGTCACGCGCACGATGAACAAGAAGACCATCAAGCGCAAGACGAAGGT
GAAACCTTTCATCAAGTCCTTGAACTACACCCATATCATGCCCACGCGGT
ATGCAGTGGATATAGACTTAAAGAAGGCGGAGGAGCAGACGGATGACAAG
AAAACCCTGAAGCGCGCGATTCGCAAGACCTTGGAAGAGCGCTACTTGAA
CCAAGCGGCCGTTGCAGCCAAGTCGGAGAGGAAGTCTCAGGGAACAAGCT
ACTTTTACAAGAAGCTGCGATTCTAAATGGGAATCATCAAGCCCGGCAAG
GTAGTGGTAGTGCTTGCCGGTCGCTATGCCGGTAAGAAGGCGGTGGTCGT
CAAGGCCTTGGACGAAGGGTCAGCGGACAAGAAGTTCCCCCACGCCATCG
TGTGTGGAATAGACGTCGCCCCCCGTAAGGTCACGCGCACGATGAACAAG
AAGACCATCAAGCGCAAGACGAAGGTGAAACCTTTCATCAAGTCCTTGAA
CTACACCCATATCATGCCCACGCGGTATGCAGTGGATATAGACTTAAAGA
AGGCGGAGGAGCAGACGGATGACAAGAAAACCCTGAAGCGCGCGATTCGC
AAGACCTTGGAAGAGCGCTACTTGAACCAAGCGGCCGTTGCAGCCAAGTC
GGAGAGGAAGTCTCAGGGAACAAGCTACTTTTACAAGAAGCTGCGATTCT
AA
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Synonyms
Publications