jgi.p|Nanoce1779_2|602371, mRNA_8063 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|602371
Unique Name	mRNA_8063
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2790
Alignment location	scaffold_25:65118..67907 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	602457
Track	FilteredModels2
ProteinId	602371

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_25	supercontig	scaffold_25:65118..67907 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|602371	gene_8063	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|602371	mRNA_8063-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8063	CDS_8063	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_25:65118..67907-
coding sequence from alignment at scaffold_25:65118..67907-

mRNA sequence

>mRNA_8063 ID=mRNA_8063|Name=jgi.p|Nanoce1779_2|602371|organism=Nannochloropsis oceanica|type=mRNA|length=2790bp
CGGGAGGGAGAACGAGGAGGGGGATGTGGAAGCGGGGGCTCCTCGACTCG
TGTTACGAGAGCTGAATGTGAGAATTGCGGTTTCAAGTTCTTATGCGCCT
GGAGCAAGGGAGGATCAGCTTATTGCTCGTTGGACTGTCGGACCACGCAT
AATCTCCATGGGGTGGAAGACGCCTTCAACCACCTTCCTACCGGTGGGTC
TATCGAGGCCGCCGAGCACTGCTATTCCCTGACGCCTCAGAAGCAACAGT
ATCTGCAGCAGCAGCAGACGGTTGAAGTGTCGCCGGTGGTGCATGTTGAG
GTCCCGGACCAGCCTCAGCTTCAGGGGCATGTTGGGCCGGAAGCAGTGGT
GCCAGTGCCAGCGCCAGCAACAGGAGGCGCAGAGGTAATAGCAGCGGCGA
CGATGGCAAATGTTAATACGGATCCCGCCATCACCGTTGTCGACACCGCT
AGTGGCATCATTAGCAGTTGCAGCAGCAGTATCACCACCACCGACGCCAC
TTTCCTTCCTCGTGAGCCCGGGGTCATCCCCTCGAGTGCTTCCCCCCTTC
CTTTGCAAGCACAACAGCGGCAGCAGGAGCCTGGAAGGCAGCAGGAGGAA
AACACCGCGCCCCCTCCAATTTTATCCCTCCTAGATCCAAATGCGGTTGT
CGCCCTTGGTCCTCGACCTCACGCTTGCCCCACGCCGTCGATGATGGTAA
TGCCCTGCGTCAGCTCCTTCAGCACTAGCAACAACAGCAGCCACAGCGAC
AGTGGCGGCATCGAAGGCCAGGCGGCCAGGCCACCTTCCCTGCTTCCTTC
CCTTGCTCAACCCCTCCCTGAAAGCAGCAGTGCTACTTGTGGGAGGGGAA
GTGGGCCGTCCCCTTCACTTTTTGACTCGGCGCAAATTGCCTCCCTGGAA
CGACGGAGGCATGCAGCCCTCCATCTCCAACCTCCTTCCCTGCAGGAGGA
AGAGCAGCAGCAGCAGCCACTGCAGGACGACGAAGTGCAATGGCCACAGC
AACAGCAACAGCAGGAGGAGACGGTGTTGGTGCGTCCACAAGCGCGTTTA
CCGGCCTCGCGGGCAGTTCTGACAGCGACAACATCTGCTGGTGCCCTAGA
CCCCACCGTTCATGCTCAGCAGTCGTTCAAGTCCTTAACTCTGCCTTGTC
TGCCTCGTCACAGCAGCGATAGGGACATGACAGGTGCGTGCCGTCAGCAG
CATCGCCACGAGCAACAGCACCAGCTCCAGCAGCAACAAGAACGGAAGCA
GCATAAGGGGTACCAGCAGCACCAGCAGCGGGAGTCCGCAATAGGCTCCC
CGTTTGAGCGGCTGGCAGCGGCGATTCGGAACGTATAATAAAACGGACAA
GGTGAGGGACGGAGGTGTCGGAGGAGATCGACCCGTACATACAACGGGGA
GATGGTAGATGAATAGATATAATTTTAAATAATTGGACAGCAACAAGAGC
ATGAGCGCGACTAGTAACTTGCCATAAATATGCGTTTGTAAGTAAATAAG
AGAGAGATTAAGAGAAAATGCGGGTCGTTGTGTGAGAAAGGATGATAGAA
GCTTACAGTTTGAGTTGAGGCGTACTGATTTGACTCGATTTCTATTTTGT
ATTTTTTGTCTTGTGTGTGTCTGATACTTTTTGAGGGATTTATTGTTTGA
TATTGATTGCTCAAATATACATACACATATTATCACCACTTATCCTTCAC
AAACTTCTTTTTTGGCGATGTACATGCCTGTTTTGACAACCGCGGTGAGA
AAATACACAGAGAGAGGTAGTATTAGAGAGAGAGTCGTAGATTTTCAATT
TTTGAATGTATTCGCCTCAATAGACTGGTCGGAGGGTATTTGTGTCACTC
TGTGTGTATAAGATTGAGTTATGTTTTTTGCCTTTTGCTCGTACATCGAC
CTGCGAGAGAGAGAGAGAGAGAGATTGGTGCGTGTGTAGTTCTGTGAGTT
GAATGTGCGTGCTCATTCCGGCGTCGCCCAAAATGTAGGTCTGTCTTCTT
TTTCAATCATGCACCCGACTTATTATTTTTTAATGAGCAGTTCTCCTCAA
CGTTGATGGCAGCAGCGAATCAAGCGCTGATTAAAAAAAAACTTCGACCG
ACACCTATGTATGACGTCAAGGTCTGTGTATGGATACCACGGAGAGGGAA
TTAAAAACGGGTGTCTGTGGTTACATCACATTATTTTCTTTCCCCTTCGA
CTGAAACTTATATATGACGTGAAGGCCATGCATAAACATAACAGAGGTTG
AATTTTATAGATTTTTTTTCCATTGATTTTTTTTTGCCACGCAACCTCCC
CCCCCAAAAAATCAAAGTGTGCTGCTTGCGTAAGAGCCTGCCAACGCGCG
ATTGGAAAATTATGACATCCTTCTATAGAATAAGCGGACTTTGGAAAAGT
TTCGAGGGAGGGAGAGAGTGATGGAAGAGAAGAGATATGAAAAATTACCA
TAATTTGTTTGACAATTGACCATAAATTTACAGATATGAAACAAAGGGAG
AAATATGGGATAGCTCGGCAAGGACCTACACTATTAAATCATAATATGGT
GATAATCTCGATGTTTCCCTGAAGCAAAATAGGGTGACGAAGGAAGAACA
TCCAACCATACGAGTGTGGGCACATCACCCCGAGCGCGGATGAAGCCAAA
AACAGGTAAAGAAGCAACATAGGCAAGCGAACCCTCTCCTCAGGCCGTAC
ATTGTAGCGGTGTTAATCACTTGGTGGGGGGACGGTCATCAATAATGAAG
GACGAGAAACGTATGAAAAGAAGGAAACTAGATACTAGAA

protein sequence of jgi.p|Nanoce1779_2|602371

>mRNA_8063-protein ID=mRNA_8063-protein|Name=jgi.p|Nanoce1779_2|602371|organism=Nannochloropsis oceanica|type=polypeptide|length=312bp
MANVNTDPAITVVDTASGIISSCSSSITTTDATFLPREPGVIPSSASPLP
LQAQQRQQEPGRQQEENTAPPPILSLLDPNAVVALGPRPHACPTPSMMVM
PCVSSFSTSNNSSHSDSGGIEGQAARPPSLLPSLAQPLPESSSATCGRGS
GPSPSLFDSAQIASLERRRHAALHLQPPSLQEEEQQQQPLQDDEVQWPQQ
QQQQEETVLVRPQARLPASRAVLTATTSAGALDPTVHAQQSFKSLTLPCL
PRHSSDRDMTGACRQQHRHEQQHQLQQQQERKQHKGYQQHQQRESAIGSP
FERLAAAIRNV*

mRNA from alignment at scaffold_25:65118..67907-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8063 ID=mRNA_8063|Name=jgi.p|Nanoce1779_2|602371|organism=Nannochloropsis oceanica|type=mRNA|length=2790bp|location=Sequence derived from alignment at scaffold_25:65118..67907- (Nannochloropsis oceanica)
CGGGAGGGAGAACGAGGAGGGGGATGTGGAAGCGGGGGCTCCTCGACTCG
TGTTACGAGAGCTGAATGTGAGAATTGCGGTTTCAAGTTCTTATGCGCCT
GGAGCAAGGGAGGATCAGCTTATTGCTCGTTGGACTGTCGGACCACGCAT
AATCTCCATGGGGTGGAAGACGCCTTCAACCACCTTCCTACCGGTGGGTC
TATCGAGGCCGCCGAGCACTGCTATTCCCTGACGCCTCAGAAGCAACAGT
ATCTGCAGCAGCAGCAGACGGTTGAAGTGTCGCCGGTGGTGCATGTTGAG
GTCCCGGACCAGCCTCAGCTTCAGGGGCATGTTGGGCCGGAAGCAGTGGT
GCCAGTGCCAGCGCCAGCAACAGGAGGCGCAGAGGTAATAGCAGCGGCGA
CGATGGCAAATGTTAATACGGATCCCGCCATCACCGTTGTCGACACCGCT
AGTGGCATCATTAGCAGTTGCAGCAGCAGTATCACCACCACCGACGCCAC
TTTCCTTCCTCGTGAGCCCGGGGTCATCCCCTCGAGTGCTTCCCCCCTTC
CTTTGCAAGCACAACAGCGGCAGCAGGAGCCTGGAAGGCAGCAGGAGGAA
AACACCGCGCCCCCTCCAATTTTATCCCTCCTAGATCCAAATGCGGTTGT
CGCCCTTGGTCCTCGACCTCACGCTTGCCCCACGCCGTCGATGATGGTAA
TGCCCTGCGTCAGCTCCTTCAGCACTAGCAACAACAGCAGCCACAGCGAC
AGTGGCGGCATCGAAGGCCAGGCGGCCAGGCCACCTTCCCTGCTTCCTTC
CCTTGCTCAACCCCTCCCTGAAAGCAGCAGTGCTACTTGTGGGAGGGGAA
GTGGGCCGTCCCCTTCACTTTTTGACTCGGCGCAAATTGCCTCCCTGGAA
CGACGGAGGCATGCAGCCCTCCATCTCCAACCTCCTTCCCTGCAGGAGGA
AGAGCAGCAGCAGCAGCCACTGCAGGACGACGAAGTGCAATGGCCACAGC
AACAGCAACAGCAGGAGGAGACGGTGTTGGTGCGTCCACAAGCGCGTTTA
CCGGCCTCGCGGGCAGTTCTGACAGCGACAACATCTGCTGGTGCCCTAGA
CCCCACCGTTCATGCTCAGCAGTCGTTCAAGTCCTTAACTCTGCCTTGTC
TGCCTCGTCACAGCAGCGATAGGGACATGACAGGTGCGTGCCGTCAGCAG
CATCGCCACGAGCAACAGCACCAGCTCCAGCAGCAACAAGAACGGAAGCA
GCATAAGGGGTACCAGCAGCACCAGCAGCGGGAGTCCGCAATAGGCTCCC
CGTTTGAGCGGCTGGCAGCGGCGATTCGGAACGTATAATAAAACGGACAA
GGTGAGGGACGGAGGTGTCGGAGGAGATCGACCCGTACATACAACGGGGA
GATGGTAGATGAATAGATATAATTTTAAATAATTGGACAGCAACAAGAGC
ATGAGCGCGACTAGTAACTTGCCATAAATATGCGTTTGTAAGTAAATAAG
AGAGAGATTAAGAGAAAATGCGGGTCGTTGTGTGAGAAAGGATGATAGAA
GCTTACAGTTTGAGTTGAGGCGTACTGATTTGACTCGATTTCTATTTTGT
ATTTTTTGTCTTGTGTGTGTCTGATACTTTTTGAGGGATTTATTGTTTGA
TATTGATTGCTCAAATATACATACACATATTATCACCACTTATCCTTCAC
AAACTTCTTTTTTGGCGATGTACATGCCTGTTTTGACAACCGCGGTGAGA
AAATACACAGAGAGAGGTAGTATTAGAGAGAGAGTCGTAGATTTTCAATT
TTTGAATGTATTCGCCTCAATAGACTGGTCGGAGGGTATTTGTGTCACTC
TGTGTGTATAAGATTGAGTTATGTTTTTTGCCTTTTGCTCGTACATCGAC
CTGCGAGAGAGAGAGAGAGAGAGATTGGTGCGTGTGTAGTTCTGTGAGTT
GAATGTGCGTGCTCATTCCGGCGTCGCCCAAAATGTAGGTCTGTCTTCTT
TTTCAATCATGCACCCGACTTATTATTTTTTAATGAGCAGTTCTCCTCAA
CGTTGATGGCAGCAGCGAATCAAGCGCTGATTAAAAAAAAACTTCGACCG
ACACCTATGTATGACGTCAAGGTCTGTGTATGGATACCACGGAGAGGGAA
TTAAAAACGGGTGTCTGTGGTTACATCACATTATTTTCTTTCCCCTTCGA
CTGAAACTTATATATGACGTGAAGGCCATGCATAAACATAACAGAGGTTG
AATTTTATAGATTTTTTTTCCATTGATTTTTTTTTGCCACGCAACCTCCC
CCCCCAAAAAATCAAAGTGTGCTGCTTGCGTAAGAGCCTGCCAACGCGCG
ATTGGAAAATTATGACATCCTTCTATAGAATAAGCGGACTTTGGAAAAGT
TTCGAGGGAGGGAGAGAGTGATGGAAGAGAAGAGATATGAAAAATTACCA
TAATTTGTTTGACAATTGACCATAAATTTACAGATATGAAACAAAGGGAG
AAATATGGGATAGCTCGGCAAGGACCTACACTATTAAATCATAATATGGT
GATAATCTCGATGTTTCCCTGAAGCAAAATAGGGTGACGAAGGAAGAACA
TCCAACCATACGAGTGTGGGCACATCACCCCGAGCGCGGATGAAGCCAAA
AACAGGTAAAGAAGCAACATAGGCAAGCGAACCCTCTCCTCAGGCCGTAC
ATTGTAGCGGTGTTAATCACTTGGTGGGGGGACGGTCATCAATAATGAAG
GACGAGAAACGTATGAAAAGAAGGAAACTAGATACTAGAA

Coding sequence (CDS) from alignment at scaffold_25:65118..67907-

>mRNA_8063 ID=mRNA_8063|Name=jgi.p|Nanoce1779_2|602371|organism=Nannochloropsis oceanica|type=CDS|length=936bp|location=Sequence derived from alignment at scaffold_25:65118..67907- (Nannochloropsis oceanica)
ATGGCAAATGTTAATACGGATCCCGCCATCACCGTTGTCGACACCGCTAG
TGGCATCATTAGCAGTTGCAGCAGCAGTATCACCACCACCGACGCCACTT
TCCTTCCTCGTGAGCCCGGGGTCATCCCCTCGAGTGCTTCCCCCCTTCCT
TTGCAAGCACAACAGCGGCAGCAGGAGCCTGGAAGGCAGCAGGAGGAAAA
CACCGCGCCCCCTCCAATTTTATCCCTCCTAGATCCAAATGCGGTTGTCG
CCCTTGGTCCTCGACCTCACGCTTGCCCCACGCCGTCGATGATGGTAATG
CCCTGCGTCAGCTCCTTCAGCACTAGCAACAACAGCAGCCACAGCGACAG
TGGCGGCATCGAAGGCCAGGCGGCCAGGCCACCTTCCCTGCTTCCTTCCC
TTGCTCAACCCCTCCCTGAAAGCAGCAGTGCTACTTGTGGGAGGGGAAGT
GGGCCGTCCCCTTCACTTTTTGACTCGGCGCAAATTGCCTCCCTGGAACG
ACGGAGGCATGCAGCCCTCCATCTCCAACCTCCTTCCCTGCAGGAGGAAG
AGCAGCAGCAGCAGCCACTGCAGGACGACGAAGTGCAATGGCCACAGCAA
CAGCAACAGCAGGAGGAGACGGTGTTGGTGCGTCCACAAGCGCGTTTACC
GGCCTCGCGGGCAGTTCTGACAGCGACAACATCTGCTGGTGCCCTAGACC
CCACCGTTCATGCTCAGCAGTCGTTCAAGTCCTTAACTCTGCCTTGTCTG
CCTCGTCACAGCAGCGATAGGGACATGACAGGTGCGTGCCGTCAGCAGCA
TCGCCACGAGCAACAGCACCAGCTCCAGCAGCAACAAGAACGGAAGCAGC
ATAAGGGGTACCAGCAGCACCAGCAGCGGGAGTCCGCAATAGGCTCCCCG
TTTGAGCGGCTGGCAGCGGCGATTCGGAACGTATAA

Synonyms

Publications