jgi.p|Nanoce1779_2|602369, mRNA_8062 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|602369
Unique NamemRNA_8062
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1582
Alignment locationscaffold_25:63518..65099 +

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Properties
Property NameValue
TranscriptId602455
TrackFilteredModels2
ProteinId602369
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_25supercontigscaffold_25:63518..65099 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|602369gene_8062Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|602369mRNA_8062-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8062CDS_8062Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8062 ID=mRNA_8062|Name=jgi.p|Nanoce1779_2|602369|organism=Nannochloropsis oceanica|type=mRNA|length=1582bp
TCCAGGCGGTAATAAGCACTCGATTTTATCCATCTACCTTTGATGAGGGA
GACTCGTGTAACTTCGACAATCTCCAGGCGGTAGTAAGCACTCGATTTTA
TCCATTTACCTTAGATGAGGGAGACTCGTGTAACTTCGACAATCTCCCCC
TCCTTGTCGTCCTTGCCTCAGATGCCTTTTGAATAGTGTGCCGCACCGAC
ACTCATCATTAACTCATATTTACACGATATCCTTACTCCACACCGTACAG
GGCACCAGACAAGTATTCCTGCGGCTTTAAAGACCTGAAGGAAAATGCAG
CGGCAAGACGGATACGACCCTTACGTAGCCTCGCTTTTCAGCCGAGCAGG
CCGTCACTCTTGCTAGGCATGGTATTCCCTGTACCCGCTTTTCTATCCCA
ACCGAAACAACATCGCTCCCTCTAAATGGGACGCCCCGACACGTCCGATC
TCAGCTTCGGAGCCGTCTACGGCCTCTCATGCCTTTCAGCATGCGTTGCC
GAAACGGTCACCTTCCCTTTAGACCTCTTCAAAACGCGCATCCAAGCCGA
ACGAATAAGCAAGCAAGACCACGCATCCTATCGGTCCTACCAAGCACGCA
TCTTGGACATCTTTCGGGAAGCCATCGCAAAAGAAAATGGCGGATACATG
AATCTATGGCGTGGCCTCACCCCTGCCTGCCTCCGTCACCTAGTCTACTC
CGGCTCCCGTCTCGCTCTGTATGAGTACATTCGGGAAGACATTTTGGGTC
GTGACGCCGATGGGAGCTTCCCTCTTCAAAAGGCAGTGGCCACGGGGATG
TTCTCTGGAGCAATGGGACAATTTCTCTCCTCTCCCGCCGACATGGTGAA
AGTTCGTATGCAAACAGCATTGGGCCGACGACGTACATCAGGAGCGGTTA
CAAATGGGACATGCGCAAGCGCAGGTCTCTCCTCCTCCTCTTCTTTGTCG
AGTGGTCGTCAGTCGACTTATCAAGCATTCAGAGATATCTTCCACGAGGG
GGGAATAAGAGGGTTATGGCGTGGATGGGTGCCGAATTGCCAAAGAGCTG
CCTTGGTGCAGCTAGGGGATTTGACGACGTATGACTGTGTTAAGCAGATG
TTGTTGAGAGAAAGCGGAGAGGAGCGATGGGGATGGGAATGGGAGGATAA
TGCAAGGACGCACGCTTGTGCGTCATTGGCTGCTGGATTGGTGGCGGCCT
TTTTAGGGACGCCAGCTGATGTGGTTAAGACGAGATGCATGAACCAAAAA
TGCGATCCTGTCACTGGGAGAGGGTTGGCGTATCGATCATCGTTTCACTG
CTTGAGTGCGGTGGTGAGGGAGGAAGGGGTGAAGGCATTGTGGCGGGGCT
GTTTATTGAATTGGTTGCGCATGGCACCTTGGTCATTGACTTTTTATATG
TCGTTTGAGCATTTCAGGAAGATGGCGGGATTGAATTCTTTCTGATGAAA
GCGGCGAAATATGAGGAAGGGGCAGACAGTGGTGTCAATAAAGATGACGG
TTCAATTTGTATAGGTCCCTTGCTCACAAAAAGCAAAATAAAGCAAGTAA
CCAGAAAATCGAAGAGGGAAAAAAAGGAAGGC
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protein sequence of jgi.p|Nanoce1779_2|602369

>mRNA_8062-protein ID=mRNA_8062-protein|Name=jgi.p|Nanoce1779_2|602369|organism=Nannochloropsis oceanica|type=polypeptide|length=340bp
MGRPDTSDLSFGAVYGLSCLSACVAETVTFPLDLFKTRIQAERISKQDHA
SYRSYQARILDIFREAIAKENGGYMNLWRGLTPACLRHLVYSGSRLALYE
YIREDILGRDADGSFPLQKAVATGMFSGAMGQFLSSPADMVKVRMQTALG
RRRTSGAVTNGTCASAGLSSSSSLSSGRQSTYQAFRDIFHEGGIRGLWRG
WVPNCQRAALVQLGDLTTYDCVKQMLLRESGEERWGWEWEDNARTHACAS
LAAGLVAAFLGTPADVVKTRCMNQKCDPVTGRGLAYRSSFHCLSAVVREE
GVKALWRGCLLNWLRMAPWSLTFYMSFEHFRKMAGLNSF*
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mRNA from alignment at scaffold_25:63518..65099+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8062 ID=mRNA_8062|Name=jgi.p|Nanoce1779_2|602369|organism=Nannochloropsis oceanica|type=mRNA|length=1582bp|location=Sequence derived from alignment at scaffold_25:63518..65099+ (Nannochloropsis oceanica)
TCCAGGCGGTAATAAGCACTCGATTTTATCCATCTACCTTTGATGAGGGA
GACTCGTGTAACTTCGACAATCTCCAGGCGGTAGTAAGCACTCGATTTTA
TCCATTTACCTTAGATGAGGGAGACTCGTGTAACTTCGACAATCTCCCCC
TCCTTGTCGTCCTTGCCTCAGATGCCTTTTGAATAGTGTGCCGCACCGAC
ACTCATCATTAACTCATATTTACACGATATCCTTACTCCACACCGTACAG
GGCACCAGACAAGTATTCCTGCGGCTTTAAAGACCTGAAGGAAAATGCAG
CGGCAAGACGGATACGACCCTTACGTAGCCTCGCTTTTCAGCCGAGCAGG
CCGTCACTCTTGCTAGGCATGGTATTCCCTGTACCCGCTTTTCTATCCCA
ACCGAAACAACATCGCTCCCTCTAAATGGGACGCCCCGACACGTCCGATC
TCAGCTTCGGAGCCGTCTACGGCCTCTCATGCCTTTCAGCATGCGTTGCC
GAAACGGTCACCTTCCCTTTAGACCTCTTCAAAACGCGCATCCAAGCCGA
ACGAATAAGCAAGCAAGACCACGCATCCTATCGGTCCTACCAAGCACGCA
TCTTGGACATCTTTCGGGAAGCCATCGCAAAAGAAAATGGCGGATACATG
AATCTATGGCGTGGCCTCACCCCTGCCTGCCTCCGTCACCTAGTCTACTC
CGGCTCCCGTCTCGCTCTGTATGAGTACATTCGGGAAGACATTTTGGGTC
GTGACGCCGATGGGAGCTTCCCTCTTCAAAAGGCAGTGGCCACGGGGATG
TTCTCTGGAGCAATGGGACAATTTCTCTCCTCTCCCGCCGACATGGTGAA
AGTTCGTATGCAAACAGCATTGGGCCGACGACGTACATCAGGAGCGGTTA
CAAATGGGACATGCGCAAGCGCAGGTCTCTCCTCCTCCTCTTCTTTGTCG
AGTGGTCGTCAGTCGACTTATCAAGCATTCAGAGATATCTTCCACGAGGG
GGGAATAAGAGGGTTATGGCGTGGATGGGTGCCGAATTGCCAAAGAGCTG
CCTTGGTGCAGCTAGGGGATTTGACGACGTATGACTGTGTTAAGCAGATG
TTGTTGAGAGAAAGCGGAGAGGAGCGATGGGGATGGGAATGGGAGGATAA
TGCAAGGACGCACGCTTGTGCGTCATTGGCTGCTGGATTGGTGGCGGCCT
TTTTAGGGACGCCAGCTGATGTGGTTAAGACGAGATGCATGAACCAAAAA
TGCGATCCTGTCACTGGGAGAGGGTTGGCGTATCGATCATCGTTTCACTG
CTTGAGTGCGGTGGTGAGGGAGGAAGGGGTGAAGGCATTGTGGCGGGGCT
GTTTATTGAATTGGTTGCGCATGGCACCTTGGTCATTGACTTTTTATATG
TCGTTTGAGCATTTCAGGAAGATGGCGGGATTGAATTCTTTCTGATGAAA
GCGGCGAAATATGAGGAAGGGGCAGACAGTGGTGTCAATAAAGATGACGG
TTCAATTTGTATAGGTCCCTTGCTCACAAAAAGCAAAATAAAGCAAGTAA
CCAGAAAATCGAAGAGGGAAAAAAAGGAAGGC
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Coding sequence (CDS) from alignment at scaffold_25:63518..65099+

>mRNA_8062 ID=mRNA_8062|Name=jgi.p|Nanoce1779_2|602369|organism=Nannochloropsis oceanica|type=CDS|length=1020bp|location=Sequence derived from alignment at scaffold_25:63518..65099+ (Nannochloropsis oceanica)
ATGGGACGCCCCGACACGTCCGATCTCAGCTTCGGAGCCGTCTACGGCCT
CTCATGCCTTTCAGCATGCGTTGCCGAAACGGTCACCTTCCCTTTAGACC
TCTTCAAAACGCGCATCCAAGCCGAACGAATAAGCAAGCAAGACCACGCA
TCCTATCGGTCCTACCAAGCACGCATCTTGGACATCTTTCGGGAAGCCAT
CGCAAAAGAAAATGGCGGATACATGAATCTATGGCGTGGCCTCACCCCTG
CCTGCCTCCGTCACCTAGTCTACTCCGGCTCCCGTCTCGCTCTGTATGAG
TACATTCGGGAAGACATTTTGGGTCGTGACGCCGATGGGAGCTTCCCTCT
TCAAAAGGCAGTGGCCACGGGGATGTTCTCTGGAGCAATGGGACAATTTC
TCTCCTCTCCCGCCGACATGGTGAAAGTTCGTATGCAAACAGCATTGGGC
CGACGACGTACATCAGGAGCGGTTACAAATGGGACATGCGCAAGCGCAGG
TCTCTCCTCCTCCTCTTCTTTGTCGAGTGGTCGTCAGTCGACTTATCAAG
CATTCAGAGATATCTTCCACGAGGGGGGAATAAGAGGGTTATGGCGTGGA
TGGGTGCCGAATTGCCAAAGAGCTGCCTTGGTGCAGCTAGGGGATTTGAC
GACGTATGACTGTGTTAAGCAGATGTTGTTGAGAGAAAGCGGAGAGGAGC
GATGGGGATGGGAATGGGAGGATAATGCAAGGACGCACGCTTGTGCGTCA
TTGGCTGCTGGATTGGTGGCGGCCTTTTTAGGGACGCCAGCTGATGTGGT
TAAGACGAGATGCATGAACCAAAAATGCGATCCTGTCACTGGGAGAGGGT
TGGCGTATCGATCATCGTTTCACTGCTTGAGTGCGGTGGTGAGGGAGGAA
GGGGTGAAGGCATTGTGGCGGGGCTGTTTATTGAATTGGTTGCGCATGGC
ACCTTGGTCATTGACTTTTTATATGTCGTTTGAGCATTTCAGGAAGATGG
CGGGATTGAATTCTTTCTGA
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Synonyms
Publications